EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000110107 (Gene tree)
Gene ID
27339
Gene Symbol
PRPF19
Alias
UBOX4|NMP200|PSO4|hPSO4|SNEV|PRP19
Full Name
pre-mRNA processing factor 19
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
16,043 bases
Position
chr11:60,890,547-60,906,589
Accession
17896
RBP type
canonical RBP
Summary
PSO4 is the human homolog of yeast Pso4, a gene essential for cell survival and DNA repair (Beck et al., 2008 [PubMed 18263876]).[supplied by OMIM, Sep 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000440266Prp19PF08606.116.9e-3311
ENSP00000227524Prp19PF08606.112.1e-3211
ENSP00000446259Prp19PF08606.116.8e-2111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
7680101The yeast PRP19 protein is not tightly associated with small nuclear RNAs, but appears to associate with the spliceosome after binding of U2 to the pre-mRNA and prior to formation of the functional spliceosome.Mol Cell Biol1993 MarTarn WY-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000535326PRPF19-202779-ENSP00000445435119 (aa)-H0YGZ5
ENST00000539180PRPF19-203441--- (aa)--
ENST00000539960PRPF19-204796--- (aa)--
ENST00000541371PRPF19-206943-ENSP00000440266252 (aa)-F5GY56
ENST00000546152PRPF19-207814-ENSP00000446259104 (aa)-F5H2I0
ENST00000227524PRPF19-2012157-ENSP00000227524504 (aa)-Q9UMS4
ENST00000540473PRPF19-205169-ENSP0000044303145 (aa)-H0YGF3
Gene Model
Click here to download ENSG00000110107's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
hsa04120Ubiquitin mediated proteolysisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000110107's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000110107PRPF1910088.571ENSAPOG00000017823prpf1910085.941Acanthochromis_polyacanthus
ENSG00000110107PRPF1910099.396ENSAMEG00000007375PRPF199999.396Ailuropoda_melanoleuca
ENSG00000110107PRPF1910088.462ENSACIG00000015876prpf199984.692Amphilophus_citrinellus
ENSG00000110107PRPF1910088.571ENSAOCG00000020444prpf1910085.941Amphiprion_ocellaris
ENSG00000110107PRPF1910088.571ENSAPEG00000016076prpf1910085.941Amphiprion_percula
ENSG00000110107PRPF1910088.571ENSATEG00000008840prpf1910085.941Anabas_testudineus
ENSG00000110107PRPF1910097.421ENSACAG00000017797PRPF1910097.421Anolis_carolinensis
ENSG00000110107PRPF19100100.000ENSANAG00000021762PRPF1910099.603Aotus_nancymaae
ENSG00000110107PRPF1910088.571ENSACLG00000009416prpf1910084.950Astatotilapia_calliptera
ENSG00000110107PRPF1910089.524ENSAMXG00000011547prpf1910085.743Astyanax_mexicanus
ENSG00000110107PRPF19100100.000ENSBTAG00000014366PRPF1910099.802Bos_taurus
ENSG00000110107PRPF1910051.923WBGene00020423prp-1910051.581Caenorhabditis_elegans
ENSG00000110107PRPF19100100.000ENSCJAG00000016509PRPF1910099.802Callithrix_jacchus
ENSG00000110107PRPF1910099.405ENSCAFG00000016438PRPF199899.405Canis_familiaris
ENSG00000110107PRPF1910099.405ENSCAFG00020012565PRPF1910099.405Canis_lupus_dingo
ENSG00000110107PRPF19100100.000ENSCHIG00000018281PRPF1910099.802Capra_hircus
ENSG00000110107PRPF199999.197ENSTSYG00000006860PRPF199999.197Carlito_syrichta
ENSG00000110107PRPF19100100.000ENSCAPG00000016225PRPF1910098.998Cavia_aperea
ENSG00000110107PRPF19100100.000ENSCPOG00000020688PRPF1910099.405Cavia_porcellus
ENSG00000110107PRPF19100100.000ENSCCAG00000025839PRPF1910099.802Cebus_capucinus
ENSG00000110107PRPF19100100.000ENSCATG00000041921PRPF19100100.000Cercocebus_atys
ENSG00000110107PRPF19100100.000ENSCLAG00000003338PRPF1910099.396Chinchilla_lanigera
ENSG00000110107PRPF19100100.000ENSCSAG00000006254PRPF19100100.000Chlorocebus_sabaeus
ENSG00000110107PRPF19100100.000ENSCHOG00000005840PRPF1910088.103Choloepus_hoffmanni
ENSG00000110107PRPF1910097.619ENSCPBG00000027061PRPF1910097.619Chrysemys_picta_bellii
ENSG00000110107PRPF1910069.231ENSCING00000016625-9968.349Ciona_intestinalis
ENSG00000110107PRPF1910068.452ENSCSAVG00000002027-9968.452Ciona_savignyi
ENSG00000110107PRPF199999.346ENSCANG00000027155PRPF199946.257Colobus_angolensis_palliatus
ENSG00000110107PRPF19100100.000ENSCGRG00001002699Prpf1910099.405Cricetulus_griseus_chok1gshd
ENSG00000110107PRPF19100100.000ENSCGRG00000008964Prpf1910098.413Cricetulus_griseus_crigri
ENSG00000110107PRPF1910088.571ENSCSEG00000010411prpf1910084.950Cynoglossus_semilaevis
ENSG00000110107PRPF1910084.762ENSCVAG00000012011prpf1910084.752Cyprinodon_variegatus
ENSG00000110107PRPF1910088.571ENSDARG00000015239prpf1910085.347Danio_rerio
ENSG00000110107PRPF19100100.000ENSDNOG00000005797PRPF1910099.802Dasypus_novemcinctus
ENSG00000110107PRPF19100100.000ENSDORG00000006906Prpf1910099.405Dipodomys_ordii
ENSG00000110107PRPF1910070.909FBgn0261119Prp199965.882Drosophila_melanogaster
ENSG00000110107PRPF1910099.038ENSETEG00000012295PRPF1910086.905Echinops_telfairi
ENSG00000110107PRPF1910086.538ENSEBUG00000013075prpf1910077.143Eptatretus_burgeri
ENSG00000110107PRPF19100100.000ENSEASG00005008056PRPF199899.160Equus_asinus_asinus
ENSG00000110107PRPF19100100.000ENSECAG00000007322PRPF1910099.603Equus_caballus
ENSG00000110107PRPF1910084.762ENSELUG00000020276-10084.554Esox_lucius
ENSG00000110107PRPF1910086.538ENSELUG00000004578prpf1910078.571Esox_lucius
ENSG00000110107PRPF1910099.405ENSFCAG00000013668PRPF1910099.405Felis_catus
ENSG00000110107PRPF1910097.222ENSFALG00000012084PRPF1910097.222Ficedula_albicollis
ENSG00000110107PRPF19100100.000ENSFDAG00000009420PRPF199699.052Fukomys_damarensis
ENSG00000110107PRPF1910087.619ENSFHEG00000022135prpf1910084.752Fundulus_heteroclitus
ENSG00000110107PRPF1910090.476ENSGMOG00000014756prpf1910086.337Gadus_morhua
ENSG00000110107PRPF1910097.619ENSGALG00000036530PRPF1910097.619Gallus_gallus
ENSG00000110107PRPF1910085.714ENSGAFG00000008931prpf1910084.158Gambusia_affinis
ENSG00000110107PRPF1910087.619ENSGACG00000017976prpf1910084.950Gasterosteus_aculeatus
ENSG00000110107PRPF1910097.817ENSGAGG00000013328PRPF1910097.817Gopherus_agassizii
ENSG00000110107PRPF19100100.000ENSGGOG00000008648PRPF19100100.000Gorilla_gorilla
ENSG00000110107PRPF1910088.571ENSHBUG00000008394prpf1910084.950Haplochromis_burtoni
ENSG00000110107PRPF1910099.038ENSHGLG00000003934PRPF1910099.008Heterocephalus_glaber_female
ENSG00000110107PRPF1910099.038ENSHGLG00100010649PRPF1910080.282Heterocephalus_glaber_male
ENSG00000110107PRPF1910087.619ENSHCOG00000016720prpf1910083.762Hippocampus_comes
ENSG00000110107PRPF1910088.571ENSIPUG00000013084prpf1910085.743Ictalurus_punctatus
ENSG00000110107PRPF1910099.405ENSSTOG00000001598PRPF1910099.405Ictidomys_tridecemlineatus
ENSG00000110107PRPF19100100.000ENSJJAG00000020609Prpf1910099.405Jaculus_jaculus
ENSG00000110107PRPF1910087.619ENSKMAG00000010257prpf1910085.149Kryptolebias_marmoratus
ENSG00000110107PRPF1910087.619ENSLBEG00000027436prpf1910085.347Labrus_bergylta
ENSG00000110107PRPF1910090.385ENSLACG00000003434PRPF1910090.079Latimeria_chalumnae
ENSG00000110107PRPF1910091.346ENSLOCG00000008123prpf1910074.200Lepisosteus_oculatus
ENSG00000110107PRPF1910099.038ENSLAFG00000002644PRPF1910096.353Loxodonta_africana
ENSG00000110107PRPF19100100.000ENSMFAG00000036743PRPF19100100.000Macaca_fascicularis
ENSG00000110107PRPF19100100.000ENSMMUG00000014530PRPF19100100.000Macaca_mulatta
ENSG00000110107PRPF19100100.000ENSMNEG00000044485PRPF19100100.000Macaca_nemestrina
ENSG00000110107PRPF19100100.000ENSMLEG00000043312PRPF19100100.000Mandrillus_leucophaeus
ENSG00000110107PRPF1910088.571ENSMAMG00000006843prpf1910085.347Mastacembelus_armatus
ENSG00000110107PRPF1910088.571ENSMZEG00005013356prpf1910084.950Maylandia_zebra
ENSG00000110107PRPF1910096.154ENSMGAG00000003180PRPF1910090.782Meleagris_gallopavo
ENSG00000110107PRPF19100100.000ENSMAUG00000012585Prpf1910098.611Mesocricetus_auratus
ENSG00000110107PRPF19100100.000ENSMICG00000011236PRPF19100100.000Microcebus_murinus
ENSG00000110107PRPF19100100.000ENSMOCG00000010383Prpf1910099.405Microtus_ochrogaster
ENSG00000110107PRPF1910086.538ENSMMOG00000003138prpf1910084.921Mola_mola
ENSG00000110107PRPF19100100.000ENSMODG00000020338PRPF1910099.603Monodelphis_domestica
ENSG00000110107PRPF1910086.538ENSMALG00000010981prpf199976.803Monopterus_albus
ENSG00000110107PRPF19100100.000MGP_CAROLIEiJ_G0022704Prpf1910099.405Mus_caroli
ENSG00000110107PRPF19100100.000ENSMUSG00000024735Prpf1910099.405Mus_musculus
ENSG00000110107PRPF19100100.000MGP_PahariEiJ_G0014198Prpf1910099.405Mus_pahari
ENSG00000110107PRPF19100100.000MGP_SPRETEiJ_G0023618Prpf1910099.405Mus_spretus
ENSG00000110107PRPF1910099.405ENSMPUG00000014432PRPF1910099.405Mustela_putorius_furo
ENSG00000110107PRPF1910099.038ENSMLUG00000017597PRPF1910094.990Myotis_lucifugus
ENSG00000110107PRPF19100100.000ENSNGAG00000012671Prpf1910098.810Nannospalax_galili
ENSG00000110107PRPF1910088.571ENSNBRG00000000055prpf1910084.950Neolamprologus_brichardi
ENSG00000110107PRPF19100100.000ENSNLEG00000013618PRPF19100100.000Nomascus_leucogenys
ENSG00000110107PRPF19100100.000ENSOPRG00000008630PRPF1910095.775Ochotona_princeps
ENSG00000110107PRPF19100100.000ENSODEG00000004043PRPF1910098.810Octodon_degus
ENSG00000110107PRPF1910088.571ENSONIG00000004880prpf1910084.950Oreochromis_niloticus
ENSG00000110107PRPF19100100.000ENSOCUG00000015689PRPF1910096.000Oryctolagus_cuniculus
ENSG00000110107PRPF1910087.619ENSORLG00000004666prpf1910084.950Oryzias_latipes
ENSG00000110107PRPF1910087.619ENSORLG00020013561prpf1910084.950Oryzias_latipes_hni
ENSG00000110107PRPF1910087.619ENSORLG00015022196prpf1910084.950Oryzias_latipes_hsok
ENSG00000110107PRPF1910086.667ENSOMEG00000004424prpf1910084.158Oryzias_melastigma
ENSG00000110107PRPF19100100.000ENSOGAG00000016756PRPF1910099.802Otolemur_garnettii
ENSG00000110107PRPF19100100.000ENSOARG00000015596PRPF1910099.802Ovis_aries
ENSG00000110107PRPF199997.446ENSPPAG00000030246PRPF1910097.446Pan_paniscus
ENSG00000110107PRPF1910099.405ENSPPRG00000002470PRPF1910099.405Panthera_pardus
ENSG00000110107PRPF1910099.038ENSPTIG00000006541PRPF199999.396Panthera_tigris_altaica
ENSG00000110107PRPF19100100.000ENSPTRG00000003724PRPF19100100.000Pan_troglodytes
ENSG00000110107PRPF19100100.000ENSPANG00000002762PRPF19100100.000Papio_anubis
ENSG00000110107PRPF1910089.524ENSPKIG00000019715prpf1910084.950Paramormyrops_kingsleyae
ENSG00000110107PRPF1910097.115ENSPSIG00000007497PRPF1910097.375Pelodiscus_sinensis
ENSG00000110107PRPF1910087.500ENSPMGG00000017527prpf1910084.921Periophthalmus_magnuspinnatus
ENSG00000110107PRPF19100100.000ENSPEMG00000019270Prpf1910098.214Peromyscus_maniculatus_bairdii
ENSG00000110107PRPF19100100.000ENSPCIG00000003485PRPF197999.143Phascolarctos_cinereus
ENSG00000110107PRPF1910085.714ENSPFOG00000002558prpf1910084.158Poecilia_formosa
ENSG00000110107PRPF1910085.714ENSPLAG00000017942prpf1910084.158Poecilia_latipinna
ENSG00000110107PRPF1910085.714ENSPMEG00000008638prpf1910084.158Poecilia_mexicana
ENSG00000110107PRPF1910086.667ENSPREG00000002489prpf199686.364Poecilia_reticulata
ENSG00000110107PRPF19100100.000ENSPPYG00000003202PRPF199298.351Pongo_abelii
ENSG00000110107PRPF1910099.405ENSPCAG00000001930PRPF1910099.405Procavia_capensis
ENSG00000110107PRPF19100100.000ENSPCOG00000014017PRPF19100100.000Propithecus_coquereli
ENSG00000110107PRPF19100100.000ENSPVAG00000014669PRPF1910099.603Pteropus_vampyrus
ENSG00000110107PRPF1910088.571ENSPNYG00000000859prpf1910084.950Pundamilia_nyererei
ENSG00000110107PRPF1910090.476ENSPNAG00000019245prpf1910086.139Pygocentrus_nattereri
ENSG00000110107PRPF19100100.000ENSRNOG00000020897Prpf1910099.405Rattus_norvegicus
ENSG00000110107PRPF19100100.000ENSRBIG00000036672PRPF19100100.000Rhinopithecus_bieti
ENSG00000110107PRPF19100100.000ENSRROG00000041572PRPF19100100.000Rhinopithecus_roxellana
ENSG00000110107PRPF19100100.000ENSSBOG00000022840PRPF1910099.802Saimiri_boliviensis_boliviensis
ENSG00000110107PRPF19100100.000ENSSHAG00000009462PRPF1910099.603Sarcophilus_harrisii
ENSG00000110107PRPF1910087.500ENSSFOG00015001236prpf1910083.135Scleropages_formosus
ENSG00000110107PRPF1910088.571ENSSMAG00000002273prpf1910085.743Scophthalmus_maximus
ENSG00000110107PRPF1910088.571ENSSDUG00000003299prpf1910085.545Seriola_dumerili
ENSG00000110107PRPF1910088.571ENSSLDG00000003019prpf1910085.545Seriola_lalandi_dorsalis
ENSG00000110107PRPF1910097.024ENSSPUG00000019328PRPF1910097.024Sphenodon_punctatus
ENSG00000110107PRPF1910088.571ENSSPAG00000008546prpf1910085.743Stegastes_partitus
ENSG00000110107PRPF19100100.000ENSSSCG00000013107PRPF1910099.603Sus_scrofa
ENSG00000110107PRPF1910097.619ENSTGUG00000006319PRPF1910097.619Taeniopygia_guttata
ENSG00000110107PRPF1910087.619ENSTRUG00000008502prpf1910084.356Takifugu_rubripes
ENSG00000110107PRPF1910067.921ENSTNIG00000014219prpf1910067.921Tetraodon_nigroviridis
ENSG00000110107PRPF1910099.405ENSTTRG00000012476PRPF1910099.405Tursiops_truncatus
ENSG00000110107PRPF1910099.405ENSUAMG00000011280PRPF1910099.405Ursus_americanus
ENSG00000110107PRPF1910099.038ENSUMAG00000011609PRPF198399.052Ursus_maritimus
ENSG00000110107PRPF1910099.038ENSVPAG00000010516PRPF1910099.119Vicugna_pacos
ENSG00000110107PRPF1910099.405ENSVVUG00000005291PRPF1910099.405Vulpes_vulpes
ENSG00000110107PRPF1910085.421ENSXETG00000011938prpf1910085.421Xenopus_tropicalis
ENSG00000110107PRPF1910086.667ENSXCOG00000003141prpf1910084.158Xiphophorus_couchianus
ENSG00000110107PRPF1910086.667ENSXMAG00000008485prpf1910084.356Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000209protein polyubiquitination11435423.IDAProcess
GO:0000244spliceosomal tri-snRNP complex assembly20595234.IDAProcess
GO:0000245spliceosomal complex assembly16332694.IMPProcess
GO:0000349generation of catalytic spliceosome for first transesterification step21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome20176811.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0000974Prp19 complex21873635.IBAComponent
GO:0000974Prp19 complex20176811.IDAComponent
GO:0001833inner cell mass cell proliferation-IEAProcess
GO:0004842ubiquitin-protein transferase activity21873635.IBAFunction
GO:0005515protein binding19188445.19633697.19641227.20176811.20467437.20595234.21536736.22365833.22569250.22961380.IPIFunction
GO:0005634nucleus11435423.19188445.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005662DNA replication factor A complex24332808.IDAComponent
GO:0005737cytoplasm11435423.IDAComponent
GO:0005811lipid droplet-IEAComponent
GO:0005819spindle-IEAComponent
GO:0006283transcription-coupled nucleotide-excision repair-TASProcess
GO:0006303double-strand break repair via nonhomologous end joining18263876.IMPProcess
GO:0008610lipid biosynthetic process-IEAProcess
GO:0010498proteasomal protein catabolic process17349974.IMPProcess
GO:0016020membrane19946888.HDAComponent
GO:0016607nuclear speck16332694.24332808.IDAComponent
GO:0034450ubiquitin-ubiquitin ligase activity11435423.IDAFunction
GO:0034613cellular protein localization18263876.IMPProcess
GO:0035861site of double-strand break18263876.IDAComponent
GO:0042802identical protein binding16332694.IPIFunction
GO:0045666positive regulation of neuron differentiation-IEAProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome-IEAProcess
GO:0048711positive regulation of astrocyte differentiation-IEAProcess
GO:0061630ubiquitin protein ligase activity11435423.IDAFunction
GO:0061630ubiquitin protein ligase activity20595234.IMPFunction
GO:0070534protein K63-linked ubiquitination20595234.24332808.IMPProcess
GO:0071006U2-type catalytic step 1 spliceosome21873635.IBAComponent
GO:0071007U2-type catalytic step 2 spliceosome28076346.IDAComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome11991638.IDAComponent
GO:0072422signal transduction involved in DNA damage checkpoint24332808.IMPProcess

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