EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000110696 (Gene tree)
Gene ID: 10944
Gene Symbol: C11orf58
Alias: SMAP
Full Name: chromosome 11 open reading frame 58
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 145,223 bases
Position: chr11:16,613,132-16,758,354
Accession: 16990
RBP type: non-canonical RBP
Summary: (Chromosome 11 Open Reading Frame 58) is a Protein Coding gene.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000524461	C11orf58-203	2040	-	-	- (aa)	-	-
ENST00000524439	C11orf58-202	405	-	ENSP00000432207	90 (aa)	-	E9PRZ9
ENST00000525256	C11orf58-206	762	-	-	- (aa)	-	-
ENST00000525684	C11orf58-207	575	-	ENSP00000432534	86 (aa)	-	E9PQA1
ENST00000531658	C11orf58-210	4258	-	-	- (aa)	-	-
ENST00000524508	C11orf58-204	406	-	-	- (aa)	-	-
ENST00000228136	C11orf58-201	2049	XM_017017143	ENSP00000228136	183 (aa)	XP_016872632	O00193
ENST00000525106	C11orf58-205	549	-	-	- (aa)	-	-
ENST00000527893	C11orf58-208	813	-	-	- (aa)	-	-
ENST00000528634	C11orf58-209	776	-	ENSP00000431237	157 (aa)	-	E9PM92

Gene Model

Click here to download ENSG00000110696's gene model file

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000110696	rs11024028	11	16735326	C	Femoral neck bone mineral density	29499414	[0.04-0.075] unit decrease	0.0574	EFO_0007785
ENSG00000110696	rs11024028	11	16735326	C	Lumbar spine bone mineral density	29499414	[0.044-0.085] unit decrease	0.0648	EFO_0007701
ENSG00000110696	rs376898975	11	16737518	TA	High light scatter reticulocyte percentage of red cells	27863252	[0.022-0.036] unit increase	0.02887673	EFO_0007986
ENSG00000110696	rs376898975	11	16737518	TA	Reticulocyte count	27863252	[0.026-0.04] unit increase	0.0331029	EFO_0007986
ENSG00000110696	rs7482541	11	16642576	C	Mean corpuscular hemoglobin	27863252	[0.025-0.039] unit increase	0.03195267	EFO_0004527
ENSG00000110696	rs7482541	11	16642576	C	Mean corpuscular volume	27863252	[0.024-0.038] unit increase	0.03119197	EFO_0004526
ENSG00000110696	rs56928337	11	16650802	GA	Heel bone mineral density	28869591	[0.018-0.04] unit increase	0.0290222	EFO_0009270
ENSG00000110696	rs56928337	11	16650802	GA	Heel bone mineral density	28869591	[0.025-0.04] unit increase	0.0322809	EFO_0009270
ENSG00000110696	rs56928337	11	16650802	GA	Heel bone mineral density	28869591	[0.022-0.042] unit increase	0.0320403	EFO_0009270
ENSG00000110696	rs3809095	11	16736699	A	Total body bone mineral density	29304378	unit decrease	0.0451	EFO_0003923
ENSG00000110696	rs3809095	11	16736699	A	Total body bone mineral density	29304378	unit decrease	0.0434	EFO_0003923
ENSG00000110696	rs11024028	11	16735326	G	Femoral neck bone mineral density	26367794	[0.034-0.066] unit increase	0.05	EFO_0007785
ENSG00000110696	rs11024028	11	16735326	G	Lumbar spine bone mineral density	26367794	[0.032-0.068] unit increase	0.05	EFO_0007701
ENSG00000110696	rs376898975	11	16737518	TA	High light scatter reticulocyte count	27863252	[0.019-0.033] unit increase	0.02604947	EFO_0007986
ENSG00000110696	rs56928337	11	16650802	?	Heel bone mineral density	30048462	[0.026-0.036] unit increase	0.0308468	EFO_0009270
ENSG00000110696	rs34591978	11	16730030	?	Heel bone mineral density	30048462	[0.026-0.036] unit decrease	0.0311261	EFO_0009270
ENSG00000110696	rs7117140	11	16676094	C	Heel bone mineral density	30598549	[0.014-0.024] unit decrease	0.0189827	EFO_0009270
ENSG00000110696	rs55941903	11	16623133	?	Mean corpuscular hemoglobin	30595370			EFO_0004527
ENSG00000110696	rs4756856	11	16620171	?	Red blood cell count	30595370			EFO_0004305

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000110696's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000110696	C11orf58	100	95.082	ENSMUSG00000030663	1110004F10Rik	100	100.000	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process