EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000113048 (Gene tree)
Gene ID
23107
Gene Symbol
MRPS27
Alias
KIAA0264
Full Name
mitochondrial ribosomal protein S27
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
101,238 bases
Position
chr5:72,219,409-72,320,646
Accession
14512
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that may be a functional partner of the death associated protein 3 (DAP3). Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Nov 2013]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000261413MRP-S27PF10037.92.7e-15611
ENSP00000426941MRP-S27PF10037.97.3e-15411
ENSP00000428120MRP-S27PF10037.95.4e-13411
ENSP00000426176MRP-S27PF10037.91.2e-11411
ENSP00000427237MRP-S27PF10037.92.2e-9211
ENSP00000430590MRP-S27PF10037.97.3e-3611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000522562MRPS27-214832--- (aa)--
ENST00000457646MRPS27-2022628-ENSP00000428120358 (aa)-G5EA06
ENST00000522404MRPS27-213550--- (aa)--
ENST00000520285MRPS27-210486--- (aa)--
ENST00000513900MRPS27-2051369-ENSP00000426941428 (aa)-Q92552
ENST00000515404MRPS27-2071183-ENSP00000427237197 (aa)-D6RJC7
ENST00000515226MRPS27-2064435--- (aa)--
ENST00000519874MRPS27-209502--- (aa)--
ENST00000261413MRPS27-2012785-ENSP00000261413414 (aa)-Q92552
ENST00000506957MRPS27-203513--- (aa)--
ENST00000508863MRPS27-204956-ENSP00000426176299 (aa)-D6RH20
ENST00000522585MRPS27-215127--- (aa)--
ENST00000522042MRPS27-211578--- (aa)--
ENST00000519143MRPS27-208298--- (aa)--
ENST00000522095MRPS27-212504-ENSP0000043059094 (aa)-E5RJ73
ENST00000523654MRPS27-216429--- (aa)--
Gene Model
Click here to download ENSG00000113048's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000113048E-Selectin8.3068000E-00519729612
ENSG00000113048E-Selectin5.7924000E-00519729612
ENSG00000113048E-Selectin5.7924000E-00519729612
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000113048rs34684973572248713?Pulse pressure28135244[0.088-0.212] unit increase0.15EFO_0005763
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000113048's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000113048MRPS2710060.638ENSAPOG00000013985mrps279654.074Acanthochromis_polyacanthus
ENSG00000113048MRPS279082.900ENSAMEG00000007215MRPS279781.761Ailuropoda_melanoleuca
ENSG00000113048MRPS279169.444ENSACIG00000004470mrps279655.352Amphilophus_citrinellus
ENSG00000113048MRPS279068.539ENSAOCG00000011222mrps279253.218Amphiprion_ocellaris
ENSG00000113048MRPS279069.101ENSAPEG00000006821mrps279753.465Amphiprion_percula
ENSG00000113048MRPS279167.778ENSATEG00000018107mrps279452.956Anabas_testudineus
ENSG00000113048MRPS2710068.227ENSAPLG00000010577MRPS279663.659Anas_platyrhynchos
ENSG00000113048MRPS2710067.000ENSACAG00000009787MRPS279763.119Anolis_carolinensis
ENSG00000113048MRPS2710094.000ENSANAG00000019419MRPS279891.885Aotus_nancymaae
ENSG00000113048MRPS2710059.375ENSACLG00000013665mrps279554.545Astatotilapia_calliptera
ENSG00000113048MRPS2710057.525ENSAMXG00000006286mrps279753.713Astyanax_mexicanus
ENSG00000113048MRPS2710086.333ENSBTAG00000001962MRPS279479.592Bos_taurus
ENSG00000113048MRPS2710095.667ENSCJAG00000016356MRPS279892.346Callithrix_jacchus
ENSG00000113048MRPS2710082.979ENSCAFG00000007967MRPS279881.710Canis_familiaris
ENSG00000113048MRPS2710085.333ENSCAFG00020019151MRPS278282.716Canis_lupus_dingo
ENSG00000113048MRPS2710085.333ENSCHIG00000024940MRPS279883.210Capra_hircus
ENSG00000113048MRPS2710091.000ENSTSYG00000000559MRPS279886.914Carlito_syrichta
ENSG00000113048MRPS279090.323ENSCAPG00000012282-9490.323Cavia_aperea
ENSG00000113048MRPS2710085.000ENSCPOG00000040481MRPS279883.210Cavia_porcellus
ENSG00000113048MRPS2710095.333ENSCCAG00000030550MRPS279892.346Cebus_capucinus
ENSG00000113048MRPS2710095.745ENSCATG00000034419MRPS279894.307Cercocebus_atys
ENSG00000113048MRPS2710081.667ENSCLAG00000000933MRPS279880.247Chinchilla_lanigera
ENSG00000113048MRPS2710094.983ENSCSAG00000015626MRPS279894.059Chlorocebus_sabaeus
ENSG00000113048MRPS2710087.000ENSCHOG00000002565MRPS279786.158Choloepus_hoffmanni
ENSG00000113048MRPS2710068.896ENSCPBG00000000195MRPS279765.185Chrysemys_picta_bellii
ENSG00000113048MRPS276641.538ENSCSAVG00000004679-7835.377Ciona_savignyi
ENSG00000113048MRPS2710096.321ENSCANG00000034545MRPS279895.297Colobus_angolensis_palliatus
ENSG00000113048MRPS2710082.667ENSCGRG00001016241Mrps279880.247Cricetulus_griseus_chok1gshd
ENSG00000113048MRPS2710082.667ENSCGRG00000005290Mrps279880.247Cricetulus_griseus_crigri
ENSG00000113048MRPS2710054.167ENSCSEG00000017845mrps279350.255Cynoglossus_semilaevis
ENSG00000113048MRPS279073.596ENSCVAG00000020594mrps279754.342Cyprinodon_variegatus
ENSG00000113048MRPS279169.832ENSDARG00000059234mrps279851.358Danio_rerio
ENSG00000113048MRPS2710085.000ENSDNOG00000008698MRPS279784.241Dasypus_novemcinctus
ENSG00000113048MRPS2710086.000ENSDORG00000028069Mrps279883.005Dipodomys_ordii
ENSG00000113048MRPS2710073.000ENSETEG00000016540MRPS279773.351Echinops_telfairi
ENSG00000113048MRPS279056.742ENSEBUG00000008346mrps278843.750Eptatretus_burgeri
ENSG00000113048MRPS2710080.000ENSEASG00005018033MRPS278876.296Equus_asinus_asinus
ENSG00000113048MRPS2710080.667ENSECAG00000008099MRPS278776.543Equus_caballus
ENSG00000113048MRPS2710076.596ENSEEUG00000014006MRPS279870.123Erinaceus_europaeus
ENSG00000113048MRPS2710060.000ENSELUG00000002400mrps279454.220Esox_lucius
ENSG00000113048MRPS2710087.333ENSFCAG00000005452MRPS279884.691Felis_catus
ENSG00000113048MRPS2710065.886ENSFALG00000010306MRPS279666.053Ficedula_albicollis
ENSG00000113048MRPS2710082.333ENSFDAG00000011101MRPS279680.247Fukomys_damarensis
ENSG00000113048MRPS279759.896ENSFHEG00000019064mrps279859.896Fundulus_heteroclitus
ENSG00000113048MRPS2710058.511ENSGMOG00000007531mrps279346.447Gadus_morhua
ENSG00000113048MRPS2710067.021ENSGALG00000015002MRPS279764.764Gallus_gallus
ENSG00000113048MRPS279070.225ENSGAFG00000010539mrps278456.716Gambusia_affinis
ENSG00000113048MRPS279168.715ENSGACG00000006548mrps279751.980Gasterosteus_aculeatus
ENSG00000113048MRPS278965.938ENSGAGG00000015958MRPS278466.667Gopherus_agassizii
ENSG00000113048MRPS2710098.936ENSGGOG00000010683MRPS2710098.551Gorilla_gorilla
ENSG00000113048MRPS2710059.375ENSHBUG00000003318mrps279554.545Haplochromis_burtoni
ENSG00000113048MRPS2710083.000ENSHGLG00000001577MRPS279782.235Heterocephalus_glaber_female
ENSG00000113048MRPS2710083.000ENSHGLG00100006845MRPS279782.235Heterocephalus_glaber_male
ENSG00000113048MRPS276944.355ENSHCOG00000000714mrps279444.118Hippocampus_comes
ENSG00000113048MRPS279172.626ENSIPUG00000025051mrps279857.494Ictalurus_punctatus
ENSG00000113048MRPS2710086.333ENSSTOG00000006565MRPS279684.198Ictidomys_tridecemlineatus
ENSG00000113048MRPS279487.634ENSJJAG00000015087-9387.634Jaculus_jaculus
ENSG00000113048MRPS279168.715ENSKMAG00000000487mrps279752.475Kryptolebias_marmoratus
ENSG00000113048MRPS2710055.853ENSLBEG00000018377mrps279153.218Labrus_bergylta
ENSG00000113048MRPS2710067.893ENSLACG00000014327MRPS279662.562Latimeria_chalumnae
ENSG00000113048MRPS279172.626ENSLOCG00000011134mrps279756.790Lepisosteus_oculatus
ENSG00000113048MRPS279085.130ENSLAFG00000004110MRPS279685.032Loxodonta_africana
ENSG00000113048MRPS2710094.983ENSMFAG00000030039MRPS279894.059Macaca_fascicularis
ENSG00000113048MRPS2710095.745ENSMMUG00000017905MRPS279893.780Macaca_mulatta
ENSG00000113048MRPS2710095.745ENSMNEG00000038426MRPS279894.554Macaca_nemestrina
ENSG00000113048MRPS2710095.745ENSMLEG00000028172MRPS279893.812Mandrillus_leucophaeus
ENSG00000113048MRPS279168.156ENSMAMG00000019547mrps279054.433Mastacembelus_armatus
ENSG00000113048MRPS2710059.375ENSMZEG00005008090mrps279554.545Maylandia_zebra
ENSG00000113048MRPS277260.156ENSMGAG00000004213MRPS279660.000Meleagris_gallopavo
ENSG00000113048MRPS2710075.532ENSMAUG00000005620Mrps279775.962Mesocricetus_auratus
ENSG00000113048MRPS2710086.047ENSMICG00000004527MRPS2710085.484Microcebus_murinus
ENSG00000113048MRPS2710082.724ENSMOCG00000014839Mrps279880.296Microtus_ochrogaster
ENSG00000113048MRPS279070.225ENSMMOG00000013203mrps279648.813Mola_mola
ENSG00000113048MRPS2710079.787ENSMODG00000001687MRPS279769.877Monodelphis_domestica
ENSG00000113048MRPS279467.742ENSMALG00000017925mrps276854.791Monopterus_albus
ENSG00000113048MRPS2710079.667MGP_CAROLIEiJ_G0018830Mrps279877.778Mus_caroli
ENSG00000113048MRPS2710078.000ENSMUSG00000041632Mrps279877.284Mus_musculus
ENSG00000113048MRPS2710078.333MGP_PahariEiJ_G0015905Mrps279976.296Mus_pahari
ENSG00000113048MRPS2710080.000MGP_SPRETEiJ_G0019712Mrps279878.025Mus_spretus
ENSG00000113048MRPS2710085.667ENSMPUG00000014403MRPS279882.963Mustela_putorius_furo
ENSG00000113048MRPS278985.768ENSMLUG00000007355MRPS279783.544Myotis_lucifugus
ENSG00000113048MRPS2710084.667ENSNGAG00000002484Mrps279780.988Nannospalax_galili
ENSG00000113048MRPS276939.560ENSNBRG00000015013mrps279339.474Neolamprologus_brichardi
ENSG00000113048MRPS279159.218ENSNBRG00000011162-9261.326Neolamprologus_brichardi
ENSG00000113048MRPS2710097.872ENSNLEG00000032219-10097.872Nomascus_leucogenys
ENSG00000113048MRPS2710072.340ENSMEUG00000013990MRPS279762.963Notamacropus_eugenii
ENSG00000113048MRPS279480.496ENSOPRG00000007274MRPS279872.099Ochotona_princeps
ENSG00000113048MRPS2710081.667ENSODEG00000016210MRPS279779.656Octodon_degus
ENSG00000113048MRPS279169.444ENSONIG00000015240mrps279654.054Oreochromis_niloticus
ENSG00000113048MRPS279169.343ENSOANG00000004072MRPS279761.818Ornithorhynchus_anatinus
ENSG00000113048MRPS2710082.000ENSOCUG00000007961MRPS279879.259Oryctolagus_cuniculus
ENSG00000113048MRPS278968.750ENSORLG00000003800mrps279368.750Oryzias_latipes
ENSG00000113048MRPS279168.715ENSORLG00020002869mrps279552.605Oryzias_latipes_hni
ENSG00000113048MRPS279168.715ENSORLG00015011723mrps279552.605Oryzias_latipes_hsok
ENSG00000113048MRPS279070.225ENSOMEG00000020582mrps279553.598Oryzias_melastigma
ENSG00000113048MRPS279980.066ENSOGAG00000008385MRPS279779.714Otolemur_garnettii
ENSG00000113048MRPS2710085.333ENSOARG00000005129MRPS279883.210Ovis_aries
ENSG00000113048MRPS27100100.000ENSPPAG00000038112MRPS278799.758Pan_paniscus
ENSG00000113048MRPS279991.327ENSPPRG00000014416MRPS279991.327Panthera_pardus
ENSG00000113048MRPS279991.327ENSPTIG00000020435MRPS279991.327Panthera_tigris_altaica
ENSG00000113048MRPS27100100.000ENSPTRG00000016967MRPS2710099.721Pan_troglodytes
ENSG00000113048MRPS2710094.314ENSPANG00000015368MRPS279293.668Papio_anubis
ENSG00000113048MRPS279168.156ENSPKIG00000018916mrps279250.123Paramormyrops_kingsleyae
ENSG00000113048MRPS279177.654ENSPSIG00000014565MRPS279764.516Pelodiscus_sinensis
ENSG00000113048MRPS2710056.187ENSPMGG00000017275mrps279753.890Periophthalmus_magnuspinnatus
ENSG00000113048MRPS2710081.395ENSPEMG00000023724Mrps279878.818Peromyscus_maniculatus_bairdii
ENSG00000113048MRPS279054.822ENSPMAG00000009772mrps279651.420Petromyzon_marinus
ENSG00000113048MRPS2710075.532ENSPCIG00000029050MRPS279771.111Phascolarctos_cinereus
ENSG00000113048MRPS279070.787ENSPFOG00000007317mrps279654.986Poecilia_formosa
ENSG00000113048MRPS279070.787ENSPLAG00000016221mrps278953.086Poecilia_latipinna
ENSG00000113048MRPS278971.023ENSPLAG00000004766MRPS279071.023Poecilia_latipinna
ENSG00000113048MRPS279070.787ENSPMEG00000016504mrps279653.086Poecilia_mexicana
ENSG00000113048MRPS279765.969ENSPREG00000015143mrps279565.969Poecilia_reticulata
ENSG00000113048MRPS2710098.936ENSPPYG00000015542MRPS279895.297Pongo_abelii
ENSG00000113048MRPS279982.796ENSPCAG00000006737MRPS279874.074Procavia_capensis
ENSG00000113048MRPS2710090.333ENSPCOG00000028430MRPS2710089.848Propithecus_coquereli
ENSG00000113048MRPS2710084.043ENSPVAG00000010933MRPS279875.556Pteropus_vampyrus
ENSG00000113048MRPS279167.778ENSPNYG00000016318mrps279454.847Pundamilia_nyererei
ENSG00000113048MRPS279169.274ENSPNAG00000008002mrps279754.950Pygocentrus_nattereri
ENSG00000113048MRPS2710081.333ENSRNOG00000017272Mrps279878.765Rattus_norvegicus
ENSG00000113048MRPS2710095.318ENSRBIG00000013185MRPS279894.554Rhinopithecus_bieti
ENSG00000113048MRPS2710095.318ENSRROG00000040560MRPS279894.554Rhinopithecus_roxellana
ENSG00000113048MRPS2710095.667ENSSBOG00000030386MRPS279892.099Saimiri_boliviensis_boliviensis
ENSG00000113048MRPS277379.021ENSSHAG00000011388-9066.541Sarcophilus_harrisii
ENSG00000113048MRPS279169.274ENSSFOG00015023271mrps279252.551Scleropages_formosus
ENSG00000113048MRPS279168.715ENSSMAG00000003423mrps279752.970Scophthalmus_maximus
ENSG00000113048MRPS2710061.458ENSSDUG00000001883mrps279756.020Seriola_dumerili
ENSG00000113048MRPS279767.539ENSSLDG00000019470mrps279567.539Seriola_lalandi_dorsalis
ENSG00000113048MRPS279977.419ENSSARG00000004944MRPS279859.113Sorex_araneus
ENSG00000113048MRPS2710065.789ENSSPUG00000000182MRPS279663.536Sphenodon_punctatus
ENSG00000113048MRPS279067.978ENSSPAG00000009682mrps279153.165Stegastes_partitus
ENSG00000113048MRPS278871.591ENSSSCG00000011161-9359.945Sus_scrofa
ENSG00000113048MRPS2710085.667ENSSSCG00000023818-9682.895Sus_scrofa
ENSG00000113048MRPS2710066.221ENSTGUG00000005691MRPS279766.580Taeniopygia_guttata
ENSG00000113048MRPS279071.348ENSTRUG00000015643mrps279753.846Takifugu_rubripes
ENSG00000113048MRPS279169.832ENSTNIG00000016683mrps279753.960Tetraodon_nigroviridis
ENSG00000113048MRPS2710065.217ENSTBEG00000016472MRPS279865.099Tupaia_belangeri
ENSG00000113048MRPS2710085.714ENSTTRG00000011837MRPS279783.416Tursiops_truncatus
ENSG00000113048MRPS2710085.333ENSUAMG00000007585MRPS279784.241Ursus_americanus
ENSG00000113048MRPS2710085.333ENSUMAG00000007672MRPS279882.963Ursus_maritimus
ENSG00000113048MRPS2710086.170ENSVPAG00000009593MRPS279875.556Vicugna_pacos
ENSG00000113048MRPS2710085.000ENSVVUG00000007276MRPS278982.308Vulpes_vulpes
ENSG00000113048MRPS2710061.342ENSXETG00000034180MRPS279860.660Xenopus_tropicalis
ENSG00000113048MRPS278971.591ENSXCOG00000007727mrps278671.591Xiphophorus_couchianus
ENSG00000113048MRPS279071.348ENSXMAG00000016098mrps279654.680Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding22841715.IDAFunction
GO:0005515protein binding19103604.22003127.IPIFunction
GO:0005737cytoplasm28714366.IDAComponent
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion22841715.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005763mitochondrial small ribosomal subunit22841715.IDAComponent
GO:0008283cell proliferation28714366.IMPProcess
GO:0019843rRNA binding22841715.IDAFunction
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess
GO:0070131positive regulation of mitochondrial translation22841715.IMPProcess
GO:0097177mitochondrial ribosome binding22841715.IDAFunction

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