EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000113300 (Gene tree)
Gene ID
57472
Gene Symbol
CNOT6
Alias
CCR4|KIAA1194|Ccr4a
Full Name
CCR4-NOT transcription complex subunit 6
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
84,033 bases
Position
chr5:180,494,373-180,578,405
Accession
14099
RBP type
canonical RBP
Summary
This gene encodes the catalytic component of the CCR4-NOT core transcriptional regulation complex. The encoded protein has a 3'-5' RNase activity and prefers polyadenylated substrates. The CCR4-NOT complex plays a role in many cellular processes, including miRNA-mediated repression, mRNA degradation, and transcriptional regulation. [provided by RefSeq, Dec 2014]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000261951Exo_endo_phosPF03372.231.8e-2111
ENSP00000377024Exo_endo_phosPF03372.231.8e-2111
ENSP00000481893Exo_endo_phosPF03372.231.8e-2111
ENSP00000422087Exo_endo_phosPF03372.233.4e-1111

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
28954224Alterations in mRNA 3' UTR Isoform Abundance Accompany Gene Expression Changes in Human Huntington's Disease Brains.Cell Rep2017 Sep 26Romo Ldoi: 10.1016/j.celrep.2017.09.009.
25100654Deadenylase depletion protects inherited mRNAs in primordial germ cells.Development2014 AugSwartz SZdoi: 10.1242/dev.110395.
21873511RNA-binding protein Khd1 and Ccr4 deadenylase play overlapping roles in the cell wall integrity pathway in Saccharomyces cerevisiae.Eukaryot Cell2011 OctIto Wdoi: 10.1128/EC.05181-11
20953170Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo.Nature2010 Oct 28Rouget Cdoi: 10.1038/nature09465
23563484Pbp1 is involved in Ccr4- and Khd1-mediated regulation of cell growth through association with ribosomal proteins Rpl12a and Rpl12b.Eukaryot Cell2013 JunKimura Ydoi: 10.1128/EC.00370-12
25944446The enzyme activities of Caf1 and Ccr4 are both required for deadenylation by the human Ccr4-Not nuclease module.Biochem J2015 Jul 1Maryati Mdoi: 10.1042/BJ20150304
29158339Genome-Wide Mapping of Decay Factor-mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4.G3 (Bethesda)2018 Jan 4Miller JEdoi: 10.1534/g3.117.300415.
30309886The central region of CNOT1 and CNOT9 stimulates deadenylation by the Ccr4-Not nuclease module.Biochem J2018 Nov 9Pavanello Ldoi: 10.1042/BCJ20180456.
31093672Identification of Arabidopsis CCR4-NOT complexes with Pumilio RNA binding proteins, APUM5 and APUM2.Plant Cell Physiol2019 May 15Arae Tdoi: 10.1093/pcp/pcz089
19716330Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation.Mol Cell2009 Sep 24Fabian MRdoi: 10.1016/j.molcel.2009.08.004
18180299Components of the CCR4-NOT complex function as nuclear hormone receptor coactivators via association with the NRC-interacting Factor NIF-1.J Biol Chem2008 Mar 14Garapaty Sdoi: 10.1074/jbc.M706986200
24142921Identification and characterization of FGF2-dependent mRNA: microRNA networks during lens fiber cell differentiation.G3 (Bethesda)2013 Dec 9Wolf Ldoi: 10.1534/g3.113.008698.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000510148CNOT6-206456--- (aa)--
ENST00000261951CNOT6-2016176XM_005265953ENSP00000261951557 (aa)XP_005266010Q9ULM6
ENST00000507016CNOT6-205382--- (aa)--
ENST00000393356CNOT6-2026303-ENSP00000377024557 (aa)-Q9ULM6
ENST00000502447CNOT6-203552--- (aa)--
ENST00000618123CNOT6-2076250-ENSP00000481893557 (aa)-Q9ULM6
ENST00000504343CNOT6-204706-ENSP00000422087234 (aa)-D6R9H6
Gene Model
Click here to download ENSG00000113300's gene model file
Pathways
Pathway IDPathway NameSource
hsa03018RNA degradationKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000113300Osteoporosis4.42670305775827E-517903296
ENSG00000113300Bone Density2.57640866827558E-517903296
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000113300rs781832955180547479CBlood protein levels30072576[0.15-0.26] unit increase0.204EFO_0007937
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000113300's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000113300CNOT610089.474ENSG00000138767CNOT6L10087.975
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000113300CNOT610094.737ENSAPOG00000009994cnot6b10086.762Acanthochromis_polyacanthus
ENSG00000113300CNOT6100100.000ENSAMEG00000000949CNOT69997.674Ailuropoda_melanoleuca
ENSG00000113300CNOT610094.737ENSACIG00000016566cnot6b10085.689Amphilophus_citrinellus
ENSG00000113300CNOT610094.737ENSAOCG00000006893cnot6b10086.762Amphiprion_ocellaris
ENSG00000113300CNOT610094.737ENSAPEG00000016949cnot6b10086.762Amphiprion_percula
ENSG00000113300CNOT610094.737ENSATEG00000007862cnot6b10084.615Anabas_testudineus
ENSG00000113300CNOT610097.368ENSAPLG00000012715CNOT69995.691Anas_platyrhynchos
ENSG00000113300CNOT610097.368ENSACAG00000016548CNOT610092.998Anolis_carolinensis
ENSG00000113300CNOT6100100.000ENSANAG00000030436CNOT69698.923Aotus_nancymaae
ENSG00000113300CNOT610094.737ENSACLG00000008279cnot6b10085.689Astatotilapia_calliptera
ENSG00000113300CNOT610089.474ENSAMXG00000034694cnot6b10084.946Astyanax_mexicanus
ENSG00000113300CNOT610092.105ENSAMXG00000019140cnot6a10086.380Astyanax_mexicanus
ENSG00000113300CNOT610097.487ENSBTAG00000017362CNOT610097.487Bos_taurus
ENSG00000113300CNOT610098.743ENSCJAG00000009795CNOT610098.743Callithrix_jacchus
ENSG00000113300CNOT610098.025ENSCAFG00000000464CNOT610098.025Canis_familiaris
ENSG00000113300CNOT610098.025ENSCAFG00020002441CNOT610098.025Canis_lupus_dingo
ENSG00000113300CNOT610097.368ENSCHIG00000019100CNOT610096.948Capra_hircus
ENSG00000113300CNOT610096.230ENSTSYG00000003982CNOT610096.230Carlito_syrichta
ENSG00000113300CNOT6100100.000ENSCPOG00000035657CNOT610092.101Cavia_porcellus
ENSG00000113300CNOT610094.255ENSCCAG00000033670CNOT610094.255Cebus_capucinus
ENSG00000113300CNOT610099.641ENSCATG00000042014CNOT610099.641Cercocebus_atys
ENSG00000113300CNOT6100100.000ENSCLAG00000010489CNOT610095.691Chinchilla_lanigera
ENSG00000113300CNOT610099.641ENSCSAG00000008165CNOT610099.641Chlorocebus_sabaeus
ENSG00000113300CNOT610097.222ENSCHOG00000009680CNOT610095.691Choloepus_hoffmanni
ENSG00000113300CNOT610095.153ENSCPBG00000008908CNOT610095.153Chrysemys_picta_bellii
ENSG00000113300CNOT610099.461ENSCANG00000026756CNOT610099.461Colobus_angolensis_palliatus
ENSG00000113300CNOT6100100.000ENSCGRG00001011452Cnot610094.973Cricetulus_griseus_chok1gshd
ENSG00000113300CNOT6100100.000ENSCGRG00000010407Cnot610093.357Cricetulus_griseus_crigri
ENSG00000113300CNOT610094.737ENSCSEG00000010939cnot6b10085.868Cynoglossus_semilaevis
ENSG00000113300CNOT610094.737ENSCVAG00000010538cnot6b10085.484Cyprinodon_variegatus
ENSG00000113300CNOT610092.105ENSDARG00000008255cnot6a10085.842Danio_rerio
ENSG00000113300CNOT610083.513ENSDARG00000101072cnot6b10083.513Danio_rerio
ENSG00000113300CNOT6100100.000ENSDNOG00000041644CNOT610096.768Dasypus_novemcinctus
ENSG00000113300CNOT6100100.000ENSDORG00000001708Cnot610086.535Dipodomys_ordii
ENSG00000113300CNOT6100100.000ENSETEG00000006975CNOT610077.639Echinops_telfairi
ENSG00000113300CNOT6100100.000ENSEASG00005012794-10097.127Equus_asinus_asinus
ENSG00000113300CNOT69091.400ENSEASG00005012957-9991.400Equus_asinus_asinus
ENSG00000113300CNOT6100100.000ENSECAG00000019325CNOT610097.846Equus_caballus
ENSG00000113300CNOT610092.105ENSECAG00000012704-9990.844Equus_caballus
ENSG00000113300CNOT698100.000ENSEEUG00000015382CNOT610096.589Erinaceus_europaeus
ENSG00000113300CNOT610089.744ENSELUG00000015981cnot6b9983.245Esox_lucius
ENSG00000113300CNOT69992.105ENSELUG00000024580cnot6a10081.900Esox_lucius
ENSG00000113300CNOT6100100.000ENSFCAG00000001881CNOT610098.025Felis_catus
ENSG00000113300CNOT610097.368ENSFALG00000007699CNOT610095.691Ficedula_albicollis
ENSG00000113300CNOT6100100.000ENSFDAG00000001999CNOT610095.512Fukomys_damarensis
ENSG00000113300CNOT66588.095ENSFHEG00000013756cnot6b9688.095Fundulus_heteroclitus
ENSG00000113300CNOT610089.474ENSGMOG00000009767cnot6b9984.877Gadus_morhua
ENSG00000113300CNOT610097.368ENSGALG00000034316CNOT610095.691Gallus_gallus
ENSG00000113300CNOT610094.737ENSGAFG00000008525cnot6b10085.663Gambusia_affinis
ENSG00000113300CNOT610080.841ENSGACG00000018046cnot6b9982.987Gasterosteus_aculeatus
ENSG00000113300CNOT610094.737ENSGAGG00000012176CNOT610079.174Gopherus_agassizii
ENSG00000113300CNOT6100100.000ENSGGOG00000003675CNOT6100100.000Gorilla_gorilla
ENSG00000113300CNOT610094.737ENSHBUG00000002819cnot6b10085.868Haplochromis_burtoni
ENSG00000113300CNOT6100100.000ENSHGLG00000017756CNOT610095.871Heterocephalus_glaber_female
ENSG00000113300CNOT6100100.000ENSHGLG00100005747CNOT610095.871Heterocephalus_glaber_male
ENSG00000113300CNOT610094.737ENSHCOG00000016176cnot6b10084.615Hippocampus_comes
ENSG00000113300CNOT610094.737ENSIPUG00000017482cnot6b10084.409Ictalurus_punctatus
ENSG00000113300CNOT610092.105ENSIPUG00000019831cnot6a10085.484Ictalurus_punctatus
ENSG00000113300CNOT610097.127ENSSTOG00000002803CNOT610097.127Ictidomys_tridecemlineatus
ENSG00000113300CNOT610095.512ENSJJAG00000012296Cnot610095.512Jaculus_jaculus
ENSG00000113300CNOT610094.737ENSKMAG00000004640cnot6b10086.559Kryptolebias_marmoratus
ENSG00000113300CNOT610092.105ENSLBEG00000027917cnot6b10084.794Labrus_bergylta
ENSG00000113300CNOT610092.308ENSLOCG00000010102cnot6b9989.964Lepisosteus_oculatus
ENSG00000113300CNOT6100100.000ENSLAFG00000016742CNOT610097.487Loxodonta_africana
ENSG00000113300CNOT610099.641ENSMFAG00000030867CNOT610099.641Macaca_fascicularis
ENSG00000113300CNOT610099.641ENSMMUG00000018690CNOT610099.641Macaca_mulatta
ENSG00000113300CNOT610099.641ENSMNEG00000038565CNOT610099.641Macaca_nemestrina
ENSG00000113300CNOT610099.641ENSMLEG00000010555CNOT610099.641Mandrillus_leucophaeus
ENSG00000113300CNOT610094.737ENSMAMG00000007515cnot6b10086.941Mastacembelus_armatus
ENSG00000113300CNOT610094.737ENSMZEG00005012899cnot6b10085.689Maylandia_zebra
ENSG00000113300CNOT6100100.000ENSMAUG00000019798Cnot610096.050Mesocricetus_auratus
ENSG00000113300CNOT69496.000ENSMICG00000028378-9987.500Microcebus_murinus
ENSG00000113300CNOT6100100.000ENSMICG00000013018-10096.050Microcebus_murinus
ENSG00000113300CNOT6100100.000ENSMOCG00000021662Cnot610096.050Microtus_ochrogaster
ENSG00000113300CNOT610092.105ENSMMOG00000003227cnot6b10084.050Mola_mola
ENSG00000113300CNOT610097.368ENSMODG00000003979CNOT610095.871Monodelphis_domestica
ENSG00000113300CNOT610094.737ENSMALG00000014251cnot6b10086.583Monopterus_albus
ENSG00000113300CNOT6100100.000MGP_CAROLIEiJ_G0016277Cnot610096.230Mus_caroli
ENSG00000113300CNOT6100100.000ENSMUSG00000020362Cnot610096.230Mus_musculus
ENSG00000113300CNOT6100100.000MGP_PahariEiJ_G0017413Cnot610096.230Mus_pahari
ENSG00000113300CNOT6100100.000MGP_SPRETEiJ_G0017122Cnot610095.871Mus_spretus
ENSG00000113300CNOT6100100.000ENSMPUG00000000587CNOT69697.846Mustela_putorius_furo
ENSG00000113300CNOT610095.196ENSMLUG00000010257CNOT610095.196Myotis_lucifugus
ENSG00000113300CNOT6100100.000ENSNGAG00000008269Cnot610094.973Nannospalax_galili
ENSG00000113300CNOT610094.737ENSNBRG00000010798cnot6b10085.868Neolamprologus_brichardi
ENSG00000113300CNOT6100100.000ENSNLEG00000002322CNOT610098.564Nomascus_leucogenys
ENSG00000113300CNOT68196.262ENSMEUG00000000025CNOT68196.262Notamacropus_eugenii
ENSG00000113300CNOT610091.589ENSOPRG00000008244-8895.943Ochotona_princeps
ENSG00000113300CNOT610097.368ENSODEG00000007041CNOT610094.794Octodon_degus
ENSG00000113300CNOT610094.737ENSONIG00000013027cnot6b9985.343Oreochromis_niloticus
ENSG00000113300CNOT610094.973ENSOANG00000010226CNOT610094.973Ornithorhynchus_anatinus
ENSG00000113300CNOT6100100.000ENSOCUG00000011083CNOT610096.243Oryctolagus_cuniculus
ENSG00000113300CNOT610094.737ENSORLG00000005059cnot6b10085.152Oryzias_latipes
ENSG00000113300CNOT610094.737ENSORLG00020012784cnot6b10085.152Oryzias_latipes_hni
ENSG00000113300CNOT610094.737ENSORLG00015022658cnot6b9884.321Oryzias_latipes_hsok
ENSG00000113300CNOT610094.737ENSOMEG00000005295cnot6b10085.331Oryzias_melastigma
ENSG00000113300CNOT69497.328ENSOGAG00000032470CNOT610097.328Otolemur_garnettii
ENSG00000113300CNOT69796.679ENSOARG00000001003CNOT610096.679Ovis_aries
ENSG00000113300CNOT6100100.000ENSPPAG00000032253CNOT6100100.000Pan_paniscus
ENSG00000113300CNOT6100100.000ENSPPRG00000011912CNOT610097.846Panthera_pardus
ENSG00000113300CNOT6100100.000ENSPTIG00000016794CNOT610097.846Panthera_tigris_altaica
ENSG00000113300CNOT6100100.000ENSPTRG00000017636CNOT6100100.000Pan_troglodytes
ENSG00000113300CNOT610099.641ENSPANG00000016191CNOT610099.641Papio_anubis
ENSG00000113300CNOT610094.737ENSPKIG00000021368cnot6b10086.559Paramormyrops_kingsleyae
ENSG00000113300CNOT69895.588ENSPSIG00000017307CNOT610095.588Pelodiscus_sinensis
ENSG00000113300CNOT610094.737ENSPMGG00000011238cnot6b10085.510Periophthalmus_magnuspinnatus
ENSG00000113300CNOT610097.368ENSPEMG00000000627Cnot610095.512Peromyscus_maniculatus_bairdii
ENSG00000113300CNOT610097.368ENSPCIG00000020319CNOT69995.691Phascolarctos_cinereus
ENSG00000113300CNOT610094.737ENSPFOG00000006291cnot6b10085.484Poecilia_formosa
ENSG00000113300CNOT610094.737ENSPLAG00000008266cnot6b10081.900Poecilia_latipinna
ENSG00000113300CNOT610094.737ENSPMEG00000009091cnot6b10085.663Poecilia_mexicana
ENSG00000113300CNOT610094.737ENSPREG00000003713cnot6b10084.409Poecilia_reticulata
ENSG00000113300CNOT6100100.000ENSPPYG00000016137CNOT6100100.000Pongo_abelii
ENSG00000113300CNOT67196.617ENSPCAG00000005599-7196.617Procavia_capensis
ENSG00000113300CNOT610092.101ENSPCOG00000017359CNOT610092.819Propithecus_coquereli
ENSG00000113300CNOT610092.101ENSPVAG00000003069CNOT610092.101Pteropus_vampyrus
ENSG00000113300CNOT610094.737ENSPNYG00000000321cnot6b10085.510Pundamilia_nyererei
ENSG00000113300CNOT610092.105ENSPNAG00000029586cnot6a10086.559Pygocentrus_nattereri
ENSG00000113300CNOT610086.842ENSPNAG00000028816cnot6b10085.305Pygocentrus_nattereri
ENSG00000113300CNOT6100100.000ENSRNOG00000054891Cnot610095.332Rattus_norvegicus
ENSG00000113300CNOT610099.461ENSRBIG00000004309CNOT610099.461Rhinopithecus_bieti
ENSG00000113300CNOT610099.461ENSRROG00000035378CNOT610099.567Rhinopithecus_roxellana
ENSG00000113300CNOT6100100.000ENSSBOG00000030494CNOT610098.743Saimiri_boliviensis_boliviensis
ENSG00000113300CNOT610097.368ENSSHAG00000017436CNOT610095.691Sarcophilus_harrisii
ENSG00000113300CNOT610097.368ENSSFOG00015015133CNOT610087.993Scleropages_formosus
ENSG00000113300CNOT610094.737ENSSFOG00015022383cnot6a9685.663Scleropages_formosus
ENSG00000113300CNOT610092.105ENSSMAG00000003084cnot6b10084.615Scophthalmus_maximus
ENSG00000113300CNOT610094.737ENSSDUG00000004151cnot6b10086.404Seriola_dumerili
ENSG00000113300CNOT610094.737ENSSLDG00000004448cnot6b10086.583Seriola_lalandi_dorsalis
ENSG00000113300CNOT66788.199ENSSARG00000012650-10075.978Sorex_araneus
ENSG00000113300CNOT610097.368ENSSPUG00000007893CNOT610094.434Sphenodon_punctatus
ENSG00000113300CNOT610094.737ENSSPAG00000000149cnot6b10086.583Stegastes_partitus
ENSG00000113300CNOT6100100.000ENSSSCG00000014009CNOT610097.186Sus_scrofa
ENSG00000113300CNOT610097.368ENSTGUG00000001119CNOT610095.332Taeniopygia_guttata
ENSG00000113300CNOT610094.737ENSTRUG00000002818cnot6b10084.022Takifugu_rubripes
ENSG00000113300CNOT610094.737ENSTNIG00000004443cnot6b9984.381Tetraodon_nigroviridis
ENSG00000113300CNOT67793.007ENSTBEG00000017094-10067.351Tupaia_belangeri
ENSG00000113300CNOT610097.368ENSTTRG00000009363CNOT610097.307Tursiops_truncatus
ENSG00000113300CNOT68495.050ENSUAMG00000004579CNOT68897.669Ursus_americanus
ENSG00000113300CNOT6100100.000ENSUMAG00000024577CNOT610093.322Ursus_maritimus
ENSG00000113300CNOT69994.595ENSVPAG00000003593CNOT68396.028Vicugna_pacos
ENSG00000113300CNOT610098.025ENSVVUG00000026940CNOT610098.025Vulpes_vulpes
ENSG00000113300CNOT610094.737ENSXCOG00000003360cnot6b10082.258Xiphophorus_couchianus
ENSG00000113300CNOT610094.737ENSXMAG00000008730cnot6b10085.663Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening20595389.IMPProcess
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening-TASProcess
GO:0003723RNA binding-IEAFunction
GO:0004532exoribonuclease activity11889047.IDAFunction
GO:0004535poly(A)-specific ribonuclease activity11889047.18377426.IDAFunction
GO:0004535poly(A)-specific ribonuclease activity-TASFunction
GO:0005515protein binding11747467.15687258.17452450.18180299.18326031.21981923.22977175.26496610.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005829cytosol-TASComponent
GO:0006417regulation of translation-IEAProcess
GO:0006977DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest-TASProcess
GO:0008284positive regulation of cell proliferation21233283.IMPProcess
GO:0010606positive regulation of cytoplasmic mRNA processing body assembly21233283.IMPProcess
GO:0016020membrane19946888.HDAComponent
GO:0030014CCR4-NOT complex19558367.IDAComponent
GO:0035195gene silencing by miRNA20065043.TASProcess
GO:0043928exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay20065043.IDAProcess
GO:0046872metal ion binding-IEAFunction
GO:0070966nuclear-transcribed mRNA catabolic process, no-go decay15314026.IMPProcess
GO:0090503RNA phosphodiester bond hydrolysis, exonucleolytic-IEAProcess
GO:2000327positive regulation of nuclear receptor transcription coactivator activity18180299.IDAProcess

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