EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000115128 (Gene tree)
Gene ID
51639
Gene Symbol
SF3B6
Alias
P14|SF3B14a|Ht006|CGI-110|SAP14a|SF3B14
Full Name
splicing factor 3b subunit 6
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
8,861 bases
Position
chr2:24,067,584-24,076,444
Accession
30096
RBP type
canonical RBP
Summary
This gene encodes a 14 kDa protein subunit of the splicing factor 3b complex. Splicing factor 3b associates with both the U2 and U11/U12 small nuclear ribonucleoprotein complexes (U2 snRNP) of spliceosomes. This 14 kDa protein interacts directly with subunit 1 of the splicing factor 3b complex. This 14 kDa protein also interacts directly with the adenosine that carries out the first transesterification step of splicing at the pre-mRNA branch site. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000233468RRM_1PF00076.229.1e-1611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
16495236Biochemical and NMR analyses of an SF3b155-p14-U2AF-RNA interaction network involved in branch point definition during pre-mRNA splicing.RNA2006 MarSpadaccini R-
27720643Molecular Architecture of SF3b and Structural Consequences of Its Cancer-Related Mutations.Mol Cell2016 Oct 20Cretu Cdoi: 10.1016/j.molcel.2016.08.036
18076038Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses.Proteins2008 JunKuwasako K-
21062891Structural model of the p14/SF3b155 branch duplex complex.RNA2011 JanSchellenberg MJdoi: 10.1261/rna.2224411
26784522Interaction between the Spliceosomal Pre-mRNA Branch Site and U2 snRNP Protein p14.Biochemistry2016 Feb 2Perea Wdoi: 10.1021/acs.biochem.5b01036
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000233468SF3B6-201770-ENSP00000233468125 (aa)-Q9Y3B4
ENST00000478050SF3B6-202720--- (aa)--
Gene Model
Click here to download ENSG00000115128's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000115128's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000115128SF3B66633.721ENSG00000188529SRSF105133.721
ENSG00000115128SF3B65430.000ENSG00000242389RBMY1E8630.000
ENSG00000115128SF3B65430.000ENSG00000234414RBMY1A18630.000
ENSG00000115128SF3B66230.488ENSG00000077312SNRPA7735.821
ENSG00000115128SF3B65430.000ENSG00000242875RBMY1B8630.000
ENSG00000115128SF3B65430.000ENSG00000244395RBMY1D8630.000
ENSG00000115128SF3B65531.944ENSG00000099622CIRBP9031.944
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000115128SF3B610098.400ENSAPOG00000023788sf3b610098.400Acanthochromis_polyacanthus
ENSG00000115128SF3B6100100.000ENSAMEG00000002786SF3B6100100.000Ailuropoda_melanoleuca
ENSG00000115128SF3B610098.400ENSACIG00000012608sf3b610098.400Amphilophus_citrinellus
ENSG00000115128SF3B610098.400ENSAOCG00000013394sf3b610098.400Amphiprion_ocellaris
ENSG00000115128SF3B610098.400ENSAPEG00000015311sf3b610098.400Amphiprion_percula
ENSG00000115128SF3B610098.400ENSATEG00000016569sf3b610098.400Anabas_testudineus
ENSG00000115128SF3B6100100.000ENSACAG00000011677SF3B6100100.000Anolis_carolinensis
ENSG00000115128SF3B6100100.000ENSANAG00000027284SF3B695100.000Aotus_nancymaae
ENSG00000115128SF3B610098.400ENSACLG00000007793sf3b610098.400Astatotilapia_calliptera
ENSG00000115128SF3B6100100.000ENSAMXG00000034888sf3b6100100.000Astyanax_mexicanus
ENSG00000115128SF3B610098.400ENSBTAG00000049128-10098.400Bos_taurus
ENSG00000115128SF3B6100100.000ENSBTAG00000003407SF3B6100100.000Bos_taurus
ENSG00000115128SF3B610068.000WBGene00016808C50D2.59168.000Caenorhabditis_elegans
ENSG00000115128SF3B6100100.000ENSCJAG00000007716SF3B6100100.000Callithrix_jacchus
ENSG00000115128SF3B6100100.000ENSCAFG00000003957SF3B6100100.000Canis_familiaris
ENSG00000115128SF3B6100100.000ENSCAFG00020025576SF3B6100100.000Canis_lupus_dingo
ENSG00000115128SF3B6100100.000ENSCHIG00000009902SF3B6100100.000Capra_hircus
ENSG00000115128SF3B6100100.000ENSTSYG00000013978SF3B6100100.000Carlito_syrichta
ENSG00000115128SF3B69796.694ENSCAPG00000016302SF3B69996.694Cavia_aperea
ENSG00000115128SF3B6100100.000ENSCPOG00000008016SF3B6100100.000Cavia_porcellus
ENSG00000115128SF3B69994.355ENSCCAG00000018894-9694.355Cebus_capucinus
ENSG00000115128SF3B6100100.000ENSCCAG00000036653SF3B6100100.000Cebus_capucinus
ENSG00000115128SF3B6100100.000ENSCATG00000030936SF3B6100100.000Cercocebus_atys
ENSG00000115128SF3B6100100.000ENSCLAG00000014512SF3B6100100.000Chinchilla_lanigera
ENSG00000115128SF3B6100100.000ENSCSAG00000008390SF3B6100100.000Chlorocebus_sabaeus
ENSG00000115128SF3B69974.194ENSCHOG00000013886-9974.194Choloepus_hoffmanni
ENSG00000115128SF3B6100100.000ENSCHOG00000000689SF3B6100100.000Choloepus_hoffmanni
ENSG00000115128SF3B6100100.000ENSCPBG00000020042SF3B6100100.000Chrysemys_picta_bellii
ENSG00000115128SF3B69880.488ENSCING00000012689-9780.488Ciona_intestinalis
ENSG00000115128SF3B6100100.000ENSCANG00000030559SF3B6100100.000Colobus_angolensis_palliatus
ENSG00000115128SF3B6100100.000ENSCGRG00001014595Sf3b6100100.000Cricetulus_griseus_chok1gshd
ENSG00000115128SF3B6100100.000ENSCGRG00000005272Sf3b6100100.000Cricetulus_griseus_crigri
ENSG00000115128SF3B610097.600ENSCSEG00000019017sf3b610097.600Cynoglossus_semilaevis
ENSG00000115128SF3B610099.200ENSCVAG00000005055sf3b610099.200Cyprinodon_variegatus
ENSG00000115128SF3B6100100.000ENSDARG00000009753sf3b6100100.000Danio_rerio
ENSG00000115128SF3B6100100.000ENSDNOG00000007148SF3B6100100.000Dasypus_novemcinctus
ENSG00000115128SF3B69982.540ENSDORG00000027390-9882.540Dipodomys_ordii
ENSG00000115128SF3B6100100.000ENSDORG00000009772Sf3b6100100.000Dipodomys_ordii
ENSG00000115128SF3B69982.540ENSDORG00000029761-9882.540Dipodomys_ordii
ENSG00000115128SF3B69277.391FBgn0035692Sf3b69577.391Drosophila_melanogaster
ENSG00000115128SF3B69292.174ENSEBUG00000004424sf3b69192.174Eptatretus_burgeri
ENSG00000115128SF3B6100100.000ENSEASG00005009993SF3B6100100.000Equus_asinus_asinus
ENSG00000115128SF3B610088.800ENSEASG00005008061-10088.800Equus_asinus_asinus
ENSG00000115128SF3B68196.040ENSECAG00000015618SF3B69396.040Equus_caballus
ENSG00000115128SF3B67986.869ENSECAG00000027755-8586.869Equus_caballus
ENSG00000115128SF3B610098.400ENSELUG00000010379sf3b610098.400Esox_lucius
ENSG00000115128SF3B6100100.000ENSFCAG00000031365SF3B6100100.000Felis_catus
ENSG00000115128SF3B6100100.000ENSFALG00000001651SF3B6100100.000Ficedula_albicollis
ENSG00000115128SF3B6100100.000ENSFDAG00000007864SF3B6100100.000Fukomys_damarensis
ENSG00000115128SF3B610099.200ENSFHEG00000000685sf3b610099.200Fundulus_heteroclitus
ENSG00000115128SF3B610097.600ENSGMOG00000005123sf3b610097.600Gadus_morhua
ENSG00000115128SF3B673100.000ENSGALG00000016501SF3B6100100.000Gallus_gallus
ENSG00000115128SF3B610098.400ENSGAFG00000009334sf3b610098.400Gambusia_affinis
ENSG00000115128SF3B610097.600ENSGACG00000004803sf3b610097.600Gasterosteus_aculeatus
ENSG00000115128SF3B6100100.000ENSGAGG00000012240SF3B6100100.000Gopherus_agassizii
ENSG00000115128SF3B6100100.000ENSGGOG00000040806SF3B6100100.000Gorilla_gorilla
ENSG00000115128SF3B610098.400ENSHBUG00000012556sf3b610098.400Haplochromis_burtoni
ENSG00000115128SF3B6100100.000ENSHGLG00000014895SF3B14100100.000Heterocephalus_glaber_female
ENSG00000115128SF3B6100100.000ENSHGLG00100008639SF3B14100100.000Heterocephalus_glaber_male
ENSG00000115128SF3B610099.200ENSHCOG00000019962sf3b610099.200Hippocampus_comes
ENSG00000115128SF3B6100100.000ENSIPUG00000023800sf3b6100100.000Ictalurus_punctatus
ENSG00000115128SF3B6100100.000ENSJJAG00000021819Sf3b6100100.000Jaculus_jaculus
ENSG00000115128SF3B610098.400ENSKMAG00000004000sf3b610098.400Kryptolebias_marmoratus
ENSG00000115128SF3B610098.400ENSLBEG00000022937sf3b610098.400Labrus_bergylta
ENSG00000115128SF3B6100100.000ENSLACG00000014326SF3B6100100.000Latimeria_chalumnae
ENSG00000115128SF3B6100100.000ENSLOCG00000016481sf3b6100100.000Lepisosteus_oculatus
ENSG00000115128SF3B6100100.000ENSLAFG00000029423SF3B6100100.000Loxodonta_africana
ENSG00000115128SF3B6100100.000ENSMFAG00000038178SF3B6100100.000Macaca_fascicularis
ENSG00000115128SF3B6100100.000ENSMMUG00000001282SF3B6100100.000Macaca_mulatta
ENSG00000115128SF3B6100100.000ENSMNEG00000029050SF3B6100100.000Macaca_nemestrina
ENSG00000115128SF3B6100100.000ENSMLEG00000019896SF3B6100100.000Mandrillus_leucophaeus
ENSG00000115128SF3B67896.907ENSMAMG00000007713sf3b68896.907Mastacembelus_armatus
ENSG00000115128SF3B610098.400ENSMZEG00005003557sf3b610098.400Maylandia_zebra
ENSG00000115128SF3B6100100.000ENSMGAG00000014057SF3B6100100.000Meleagris_gallopavo
ENSG00000115128SF3B6100100.000ENSMAUG00000000586-100100.000Mesocricetus_auratus
ENSG00000115128SF3B6100100.000ENSMICG00000032874SF3B6100100.000Microcebus_murinus
ENSG00000115128SF3B6100100.000ENSMOCG00000014338Sf3b6100100.000Microtus_ochrogaster
ENSG00000115128SF3B610099.200ENSMMOG00000015653sf3b610099.200Mola_mola
ENSG00000115128SF3B610092.800ENSMODG00000002144SF3B610092.800Monodelphis_domestica
ENSG00000115128SF3B610099.200ENSMALG00000019642sf3b66799.200Monopterus_albus
ENSG00000115128SF3B6100100.000MGP_CAROLIEiJ_G0017590Sf3b6100100.000Mus_caroli
ENSG00000115128SF3B6100100.000ENSMUSG00000037361Sf3b6100100.000Mus_musculus
ENSG00000115128SF3B6100100.000MGP_PahariEiJ_G0029348Sf3b6100100.000Mus_pahari
ENSG00000115128SF3B6100100.000MGP_SPRETEiJ_G0018434Sf3b6100100.000Mus_spretus
ENSG00000115128SF3B6100100.000ENSMPUG00000013957SF3B6100100.000Mustela_putorius_furo
ENSG00000115128SF3B610098.400ENSMLUG00000002473SF3B610098.400Myotis_lucifugus
ENSG00000115128SF3B6100100.000ENSNGAG00000020256Sf3b6100100.000Nannospalax_galili
ENSG00000115128SF3B610098.400ENSNBRG00000018244sf3b610098.400Neolamprologus_brichardi
ENSG00000115128SF3B6100100.000ENSNLEG00000000815-100100.000Nomascus_leucogenys
ENSG00000115128SF3B687100.000ENSODEG00000009547SF3B692100.000Octodon_degus
ENSG00000115128SF3B610098.400ENSONIG00000001219sf3b610098.400Oreochromis_niloticus
ENSG00000115128SF3B6100100.000ENSOANG00000007627SF3B6100100.000Ornithorhynchus_anatinus
ENSG00000115128SF3B6100100.000ENSOCUG00000022008SF3B6100100.000Oryctolagus_cuniculus
ENSG00000115128SF3B610098.400ENSORLG00000015955sf3b610098.400Oryzias_latipes
ENSG00000115128SF3B610098.400ENSORLG00020005875sf3b610098.400Oryzias_latipes_hni
ENSG00000115128SF3B610098.400ENSORLG00015001347sf3b610098.400Oryzias_latipes_hsok
ENSG00000115128SF3B610098.400ENSOMEG00000014506sf3b610098.400Oryzias_melastigma
ENSG00000115128SF3B6100100.000ENSOGAG00000004468SF3B6100100.000Otolemur_garnettii
ENSG00000115128SF3B6100100.000ENSOARG00000017819SF3B6100100.000Ovis_aries
ENSG00000115128SF3B6100100.000ENSPPAG00000027816SF3B6100100.000Pan_paniscus
ENSG00000115128SF3B6100100.000ENSPPRG00000023257SF3B6100100.000Panthera_pardus
ENSG00000115128SF3B6100100.000ENSPTIG00000013322SF3B6100100.000Panthera_tigris_altaica
ENSG00000115128SF3B6100100.000ENSPTRG00000011709SF3B6100100.000Pan_troglodytes
ENSG00000115128SF3B6100100.000ENSPANG00000021963SF3B6100100.000Papio_anubis
ENSG00000115128SF3B6100100.000ENSPKIG00000012311sf3b6100100.000Paramormyrops_kingsleyae
ENSG00000115128SF3B692100.000ENSPSIG00000017115SF3B6100100.000Pelodiscus_sinensis
ENSG00000115128SF3B67896.907ENSPMGG00000014621sf3b68196.907Periophthalmus_magnuspinnatus
ENSG00000115128SF3B6100100.000ENSPEMG00000010308Sf3b6100100.000Peromyscus_maniculatus_bairdii
ENSG00000115128SF3B69488.136ENSPMAG00000006008sf3b69488.136Petromyzon_marinus
ENSG00000115128SF3B6100100.000ENSPCIG00000022128-100100.000Phascolarctos_cinereus
ENSG00000115128SF3B69977.419ENSPCIG00000015858-9977.419Phascolarctos_cinereus
ENSG00000115128SF3B610098.400ENSPFOG00000012494sf3b610098.400Poecilia_formosa
ENSG00000115128SF3B610098.400ENSPLAG00000020460sf3b610098.400Poecilia_latipinna
ENSG00000115128SF3B610098.400ENSPMEG00000004426sf3b610098.400Poecilia_mexicana
ENSG00000115128SF3B6100100.000ENSPPYG00000012603SF3B6100100.000Pongo_abelii
ENSG00000115128SF3B6100100.000ENSPVAG00000011346SF3B6100100.000Pteropus_vampyrus
ENSG00000115128SF3B610098.400ENSPNYG00000021832sf3b610098.400Pundamilia_nyererei
ENSG00000115128SF3B6100100.000ENSPNAG00000008845sf3b6100100.000Pygocentrus_nattereri
ENSG00000115128SF3B610084.800ENSRNOG00000046172Sf3b610084.800Rattus_norvegicus
ENSG00000115128SF3B6100100.000ENSRBIG00000039598SF3B6100100.000Rhinopithecus_bieti
ENSG00000115128SF3B6100100.000ENSRROG00000011368SF3B6100100.000Rhinopithecus_roxellana
ENSG00000115128SF3B6100100.000ENSSBOG00000002914SF3B6100100.000Saimiri_boliviensis_boliviensis
ENSG00000115128SF3B6100100.000ENSSFOG00015014370sf3b6100100.000Scleropages_formosus
ENSG00000115128SF3B610098.400ENSSMAG00000004566sf3b610098.400Scophthalmus_maximus
ENSG00000115128SF3B610098.400ENSSDUG00000006538sf3b610098.400Seriola_dumerili
ENSG00000115128SF3B610098.400ENSSLDG00000004494sf3b610098.400Seriola_lalandi_dorsalis
ENSG00000115128SF3B6100100.000ENSSARG00000011902-100100.000Sorex_araneus
ENSG00000115128SF3B6100100.000ENSSPUG00000014919SF3B6100100.000Sphenodon_punctatus
ENSG00000115128SF3B610098.400ENSSPAG00000013201sf3b610098.400Stegastes_partitus
ENSG00000115128SF3B6100100.000ENSSSCG00000008587SF3B6100100.000Sus_scrofa
ENSG00000115128SF3B6100100.000ENSTGUG00000013191SF3B6100100.000Taeniopygia_guttata
ENSG00000115128SF3B610098.400ENSTRUG00000025286sf3b610098.400Takifugu_rubripes
ENSG00000115128SF3B610098.400ENSTNIG00000009719sf3b610098.400Tetraodon_nigroviridis
ENSG00000115128SF3B692100.000ENSTBEG00000012532SF3B6100100.000Tupaia_belangeri
ENSG00000115128SF3B692100.000ENSTTRG00000013430SF3B6100100.000Tursiops_truncatus
ENSG00000115128SF3B6100100.000ENSUAMG00000025329SF3B6100100.000Ursus_americanus
ENSG00000115128SF3B610081.746ENSUAMG00000000978-10081.746Ursus_americanus
ENSG00000115128SF3B6100100.000ENSUMAG00000022835SF3B6100100.000Ursus_maritimus
ENSG00000115128SF3B692100.000ENSVPAG00000005546SF3B6100100.000Vicugna_pacos
ENSG00000115128SF3B6100100.000ENSVVUG00000010874SF3B6100100.000Vulpes_vulpes
ENSG00000115128SF3B610099.200ENSXETG00000018204sf3b610099.200Xenopus_tropicalis
ENSG00000115128SF3B68685.841ENSXCOG00000008477sf3b68885.841Xiphophorus_couchianus
ENSG00000115128SF3B610098.400ENSXMAG00000010747sf3b610098.400Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome27720643.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0001825blastocyst formation-IEAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003729mRNA binding16432215.IDAFunction
GO:0005515protein binding16432215.21062891.IPIFunction
GO:0005634nucleus27720643.28541300.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005686U2 snRNP21873635.IBAComponent
GO:0005689U12-type spliceosomal complex21873635.IBAComponent
GO:0005689U12-type spliceosomal complex15146077.IDAComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent

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