EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000116668 (Gene tree)
Gene ID: 54823
Gene Symbol: SWT1
Alias: FLJ20121|HsSwt1|C1orf26
Full Name: SWT1 RNA endoribonuclease homolog
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 134,759 bases
Position: chr1:185,157,023-185,291,781
Accession: 16785
RBP type: canonical RBP
Summary: (SWT1 RNA Endoribonuclease Homolog) is a Protein Coding gene.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000356470	PIN_4	PF13638.6	3.6e-27	1	1
ENSP00000356471	PIN_4	PF13638.6	3.6e-27	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000367500	SWT1-201	3830	XM_005245273	ENSP00000356470	900 (aa)	XP_005245330	Q5T5J6
ENST00000367501	SWT1-202	3001	XM_005245271	ENSP00000356471	900 (aa)	XP_005245328	Q5T5J6
ENST00000450350	SWT1-203	633	-	ENSP00000401413	159 (aa)	-	Q5TC96

Gene Model

Click here to download ENSG00000116668's gene model file

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000116668	rs144658860	1	185197819	?	Number of common colds	28928442	[0.067-0.172] unit decrease	0.1197	EFO_0008417

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000116668's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000116668	SWT1	60	33.851	ENSAPOG00000014897	-	58	33.851	Acanthochromis_polyacanthus
ENSG00000116668	SWT1	99	79.227	ENSAMEG00000013585	SWT1	99	79.227	Ailuropoda_melanoleuca
ENSG00000116668	SWT1	60	33.333	ENSAOCG00000013932	swt1	58	33.333	Amphiprion_ocellaris
ENSG00000116668	SWT1	60	33.162	ENSAPEG00000009613	-	58	33.162	Amphiprion_percula
ENSG00000116668	SWT1	61	34.184	ENSATEG00000018946	swt1	58	34.014	Anabas_testudineus
ENSG00000116668	SWT1	81	48.652	ENSAPLG00000008607	SWT1	100	48.925	Anas_platyrhynchos
ENSG00000116668	SWT1	62	48.057	ENSACAG00000002276	SWT1	65	48.057	Anolis_carolinensis
ENSG00000116668	SWT1	100	90.566	ENSANAG00000027068	SWT1	100	90.566	Aotus_nancymaae
ENSG00000116668	SWT1	58	32.923	ENSACLG00000009742	swt1	68	32.923	Astatotilapia_calliptera
ENSG00000116668	SWT1	63	38.316	ENSAMXG00000010971	swt1	59	38.316	Astyanax_mexicanus
ENSG00000116668	SWT1	100	56.604	ENSBTAG00000004492	SWT1	100	75.000	Bos_taurus
ENSG00000116668	SWT1	99	89.111	ENSCJAG00000005544	SWT1	99	89.111	Callithrix_jacchus
ENSG00000116668	SWT1	99	79.558	ENSCAFG00000013543	SWT1	99	79.051	Canis_familiaris
ENSG00000116668	SWT1	99	78.070	ENSCAFG00020015648	SWT1	99	80.471	Canis_lupus_dingo
ENSG00000116668	SWT1	91	80.242	ENSCHIG00000023511	SWT1	99	85.983	Capra_hircus
ENSG00000116668	SWT1	99	83.002	ENSTSYG00000010470	SWT1	99	83.554	Carlito_syrichta
ENSG00000116668	SWT1	93	74.763	ENSCPOG00000014251	SWT1	100	74.763	Cavia_porcellus
ENSG00000116668	SWT1	100	90.899	ENSCCAG00000033926	SWT1	100	90.899	Cebus_capucinus
ENSG00000116668	SWT1	100	94.463	ENSCATG00000042210	SWT1	99	96.048	Cercocebus_atys
ENSG00000116668	SWT1	99	75.721	ENSCLAG00000013959	SWT1	99	75.721	Chinchilla_lanigera
ENSG00000116668	SWT1	100	94.352	ENSCSAG00000012895	SWT1	100	94.352	Chlorocebus_sabaeus
ENSG00000116668	SWT1	100	64.780	ENSCHOG00000002211	-	64	83.648	Choloepus_hoffmanni
ENSG00000116668	SWT1	96	46.077	ENSCPBG00000015691	SWT1	95	47.194	Chrysemys_picta_bellii
ENSG00000116668	SWT1	100	94.000	ENSCANG00000032207	SWT1	99	95.509	Colobus_angolensis_palliatus
ENSG00000116668	SWT1	99	73.149	ENSCGRG00001022955	Swt1	98	73.149	Cricetulus_griseus_chok1gshd
ENSG00000116668	SWT1	99	73.149	ENSCGRG00000010224	Swt1	99	73.149	Cricetulus_griseus_crigri
ENSG00000116668	SWT1	60	33.618	ENSCSEG00000017352	swt1	74	33.390	Cynoglossus_semilaevis
ENSG00000116668	SWT1	73	35.328	ENSDARG00000094010	swt1	69	35.193	Danio_rerio
ENSG00000116668	SWT1	100	66.250	ENSDNOG00000005254	SWT1	100	74.334	Dasypus_novemcinctus
ENSG00000116668	SWT1	91	78.271	ENSDORG00000010531	Swt1	98	78.271	Dipodomys_ordii
ENSG00000116668	SWT1	100	70.625	ENSEASG00005005530	SWT1	97	78.093	Equus_asinus_asinus
ENSG00000116668	SWT1	92	77.671	ENSECAG00000012085	SWT1	99	77.671	Equus_caballus
ENSG00000116668	SWT1	85	89.412	ENSEEUG00000003664	SWT1	88	89.412	Erinaceus_europaeus
ENSG00000116668	SWT1	63	36.455	ENSELUG00000020565	swt1	58	36.789	Esox_lucius
ENSG00000116668	SWT1	99	79.360	ENSFCAG00000011286	SWT1	99	79.360	Felis_catus
ENSG00000116668	SWT1	86	41.756	ENSFALG00000003206	SWT1	91	42.619	Ficedula_albicollis
ENSG00000116668	SWT1	99	75.193	ENSFDAG00000007569	SWT1	99	74.862	Fukomys_damarensis
ENSG00000116668	SWT1	85	44.388	ENSGALG00000034230	SWT1	90	44.515	Gallus_gallus
ENSG00000116668	SWT1	75	31.984	ENSGAFG00000007803	-	72	31.984	Gambusia_affinis
ENSG00000116668	SWT1	89	47.226	ENSGAGG00000025050	SWT1	99	57.168	Gopherus_agassizii
ENSG00000116668	SWT1	58	98.095	ENSGGOG00000041167	-	96	98.095	Gorilla_gorilla
ENSG00000116668	SWT1	60	32.823	ENSHBUG00000006188	swt1	67	32.823	Haplochromis_burtoni
ENSG00000116668	SWT1	99	75.362	ENSHGLG00000006542	SWT1	99	75.362	Heterocephalus_glaber_female
ENSG00000116668	SWT1	99	77.171	ENSHGLG00100014408	SWT1	99	76.726	Heterocephalus_glaber_male
ENSG00000116668	SWT1	73	33.869	ENSIPUG00000009113	-	69	33.869	Ictalurus_punctatus
ENSG00000116668	SWT1	99	76.762	ENSSTOG00000010356	SWT1	99	77.313	Ictidomys_tridecemlineatus
ENSG00000116668	SWT1	99	70.530	ENSJJAG00000015927	Swt1	99	69.392	Jaculus_jaculus
ENSG00000116668	SWT1	63	32.459	ENSKMAG00000012533	swt1	61	32.787	Kryptolebias_marmoratus
ENSG00000116668	SWT1	59	35.017	ENSLBEG00000020663	-	57	35.017	Labrus_bergylta
ENSG00000116668	SWT1	75	46.418	ENSLACG00000009194	SWT1	99	46.418	Latimeria_chalumnae
ENSG00000116668	SWT1	58	42.674	ENSLOCG00000001749	swt1	98	41.558	Lepisosteus_oculatus
ENSG00000116668	SWT1	64	85.690	ENSLAFG00000004346	-	99	85.690	Loxodonta_africana
ENSG00000116668	SWT1	100	94.131	ENSMFAG00000031793	SWT1	99	95.862	Macaca_fascicularis
ENSG00000116668	SWT1	100	92.453	ENSMMUG00000013882	SWT1	100	91.548	Macaca_mulatta
ENSG00000116668	SWT1	100	94.241	ENSMNEG00000035502	SWT1	99	95.690	Macaca_nemestrina
ENSG00000116668	SWT1	100	94.778	ENSMLEG00000038692	SWT1	99	96.048	Mandrillus_leucophaeus
ENSG00000116668	SWT1	60	32.993	ENSMZEG00005018489	swt1	67	32.993	Maylandia_zebra
ENSG00000116668	SWT1	62	53.206	ENSMGAG00000000973	SWT1	96	53.206	Meleagris_gallopavo
ENSG00000116668	SWT1	99	66.519	ENSMAUG00000007996	Swt1	97	66.519	Mesocricetus_auratus
ENSG00000116668	SWT1	99	83.646	ENSMICG00000014975	SWT1	99	83.867	Microcebus_murinus
ENSG00000116668	SWT1	99	71.934	ENSMOCG00000009776	Swt1	98	71.934	Microtus_ochrogaster
ENSG00000116668	SWT1	99	59.436	ENSMODG00000007472	SWT1	99	59.436	Monodelphis_domestica
ENSG00000116668	SWT1	61	36.192	ENSMALG00000019308	swt1	58	36.192	Monopterus_albus
ENSG00000116668	SWT1	99	69.282	MGP_CAROLIEiJ_G0014692	Swt1	99	70.276	Mus_caroli
ENSG00000116668	SWT1	99	68.840	ENSMUSG00000052748	Swt1	98	69.834	Mus_musculus
ENSG00000116668	SWT1	99	71.192	MGP_PahariEiJ_G0027928	Swt1	98	72.185	Mus_pahari
ENSG00000116668	SWT1	99	69.503	MGP_SPRETEiJ_G0015499	Swt1	98	70.497	Mus_spretus
ENSG00000116668	SWT1	99	78.453	ENSMPUG00000011913	SWT1	99	78.453	Mustela_putorius_furo
ENSG00000116668	SWT1	99	76.301	ENSMLUG00000001142	SWT1	97	76.301	Myotis_lucifugus
ENSG00000116668	SWT1	99	75.828	ENSNGAG00000021080	Swt1	98	75.938	Nannospalax_galili
ENSG00000116668	SWT1	100	95.444	ENSNLEG00000018031	SWT1	100	95.444	Nomascus_leucogenys
ENSG00000116668	SWT1	99	45.545	ENSMEUG00000000236	-	99	45.985	Notamacropus_eugenii
ENSG00000116668	SWT1	88	69.231	ENSOPRG00000000692	SWT1	88	68.483	Ochotona_princeps
ENSG00000116668	SWT1	59	35.634	ENSONIG00000009994	swt1	99	35.821	Oreochromis_niloticus
ENSG00000116668	SWT1	87	56.234	ENSOANG00000001013	-	99	56.359	Ornithorhynchus_anatinus
ENSG00000116668	SWT1	99	69.868	ENSOCUG00000004901	SWT1	99	69.868	Oryctolagus_cuniculus
ENSG00000116668	SWT1	59	33.621	ENSORLG00000009682	swt1	58	33.621	Oryzias_latipes
ENSG00000116668	SWT1	59	34.079	ENSORLG00020011654	swt1	59	34.079	Oryzias_latipes_hni
ENSG00000116668	SWT1	59	33.621	ENSORLG00015007734	swt1	59	33.621	Oryzias_latipes_hsok
ENSG00000116668	SWT1	72	33.333	ENSOMEG00000006607	swt1	66	33.333	Oryzias_melastigma
ENSG00000116668	SWT1	99	80.663	ENSOGAG00000016195	SWT1	99	80.442	Otolemur_garnettii
ENSG00000116668	SWT1	99	79.249	ENSOARG00000004156	SWT1	98	79.249	Ovis_aries
ENSG00000116668	SWT1	100	99.111	ENSPPAG00000021400	SWT1	100	99.111	Pan_paniscus
ENSG00000116668	SWT1	99	79.801	ENSPPRG00000023754	SWT1	99	79.801	Panthera_pardus
ENSG00000116668	SWT1	99	79.691	ENSPTIG00000021889	SWT1	99	79.691	Panthera_tigris_altaica
ENSG00000116668	SWT1	100	99.000	ENSPTRG00000001777	SWT1	100	99.000	Pan_troglodytes
ENSG00000116668	SWT1	100	94.020	ENSPANG00000005099	SWT1	99	95.704	Papio_anubis
ENSG00000116668	SWT1	61	37.522	ENSPKIG00000005979	swt1	59	37.522	Paramormyrops_kingsleyae
ENSG00000116668	SWT1	95	45.372	ENSPSIG00000008961	SWT1	94	45.968	Pelodiscus_sinensis
ENSG00000116668	SWT1	99	72.517	ENSPEMG00000008208	Swt1	98	72.517	Peromyscus_maniculatus_bairdii
ENSG00000116668	SWT1	99	58.980	ENSPCIG00000002443	SWT1	99	73.077	Phascolarctos_cinereus
ENSG00000116668	SWT1	61	31.736	ENSPFOG00000010988	-	69	32.060	Poecilia_formosa
ENSG00000116668	SWT1	61	31.901	ENSPLAG00000022908	-	60	31.901	Poecilia_latipinna
ENSG00000116668	SWT1	61	31.736	ENSPMEG00000006943	-	60	31.736	Poecilia_mexicana
ENSG00000116668	SWT1	100	96.855	ENSPPYG00000000415	SWT1	100	96.556	Pongo_abelii
ENSG00000116668	SWT1	99	65.342	ENSPCAG00000008337	SWT1	99	65.342	Procavia_capensis
ENSG00000116668	SWT1	70	86.813	ENSPCOG00000018195	-	93	86.813	Propithecus_coquereli
ENSG00000116668	SWT1	87	78.711	ENSPVAG00000005968	SWT1	88	78.838	Pteropus_vampyrus
ENSG00000116668	SWT1	60	32.993	ENSPNYG00000012934	swt1	67	32.993	Pundamilia_nyererei
ENSG00000116668	SWT1	61	37.610	ENSPNAG00000017795	swt1	58	37.610	Pygocentrus_nattereri
ENSG00000116668	SWT1	99	72.167	ENSRNOG00000032258	Swt1	98	72.577	Rattus_norvegicus
ENSG00000116668	SWT1	100	91.333	ENSRBIG00000040630	SWT1	100	92.083	Rhinopithecus_bieti
ENSG00000116668	SWT1	82	89.313	ENSRROG00000028596	SWT1	100	93.800	Rhinopithecus_roxellana
ENSG00000116668	SWT1	100	91.251	ENSSBOG00000028825	SWT1	100	91.251	Saimiri_boliviensis_boliviensis
ENSG00000116668	SWT1	99	59.892	ENSSHAG00000009241	SWT1	99	59.892	Sarcophilus_harrisii
ENSG00000116668	SWT1	62	38.664	ENSSFOG00015004895	swt1	57	38.664	Scleropages_formosus
ENSG00000116668	SWT1	67	32.772	ENSSMAG00000020761	-	51	32.925	Scophthalmus_maximus
ENSG00000116668	SWT1	60	34.589	ENSSDUG00000012345	swt1	58	34.596	Seriola_dumerili
ENSG00000116668	SWT1	60	34.418	ENSSLDG00000003821	swt1	58	34.423	Seriola_lalandi_dorsalis
ENSG00000116668	SWT1	57	49.421	ENSSARG00000011524	-	99	49.421	Sorex_araneus
ENSG00000116668	SWT1	78	48.285	ENSSPUG00000003899	SWT1	81	47.785	Sphenodon_punctatus
ENSG00000116668	SWT1	60	33.276	ENSSPAG00000001030	swt1	58	33.276	Stegastes_partitus
ENSG00000116668	SWT1	99	81.436	ENSSSCG00000015569	SWT1	99	82.009	Sus_scrofa
ENSG00000116668	SWT1	61	52.594	ENSTGUG00000003718	-	100	52.594	Taeniopygia_guttata
ENSG00000116668	SWT1	60	34.912	ENSTRUG00000006420	swt1	61	34.555	Takifugu_rubripes
ENSG00000116668	SWT1	100	63.354	ENSTBEG00000016891	-	54	88.525	Tupaia_belangeri
ENSG00000116668	SWT1	99	77.263	ENSTTRG00000005914	SWT1	99	77.263	Tursiops_truncatus
ENSG00000116668	SWT1	99	78.453	ENSUAMG00000020937	SWT1	99	81.016	Ursus_americanus
ENSG00000116668	SWT1	99	78.895	ENSUMAG00000021918	SWT1	99	78.895	Ursus_maritimus
ENSG00000116668	SWT1	92	85.308	ENSVPAG00000011855	SWT1	92	85.308	Vicugna_pacos
ENSG00000116668	SWT1	99	80.110	ENSVVUG00000009182	SWT1	99	80.110	Vulpes_vulpes
ENSG00000116668	SWT1	61	33.779	ENSXMAG00000023472	-	60	33.779	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	21873635.	IBA	Process