EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000116698 (Gene tree)
Gene ID
9887
Gene Symbol
SMG7
Alias
KIAA0250|EST1C|SGA56M|SMG-7|C1orf16
Full Name
SMG7 nonsense mediated mRNA decay factor
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
126,031 bases
Position
chr1:183,472,216-183,598,246
Accession
16792
RBP type
canonical RBP
Summary
This gene encodes a protein that is essential for nonsense-mediated mRNA decay (NMD); a process whereby transcripts with premature termination codons are targeted for rapid degradation by a mRNA decay complex. The mRNA decay complex consists, in part, of this protein along with proteins SMG5 and UPF1. The N-terminal domain of this protein is thought to mediate its association with SMG5 or UPF1 while the C-terminal domain interacts with the mRNA decay complex. This protein may therefore couple changes in UPF1 phosphorylation state to the degradation of NMD-candidate transcripts. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Aug 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000388390EST1PF10374.91.3e-2411
ENSP00000421358EST1PF10374.92.6e-2411
ENSP00000340766EST1PF10374.92.6e-2411
ENSP00000426915EST1PF10374.92.7e-2411
ENSP00000356507EST1PF10374.92.8e-2411
ENSP00000425133EST1PF10374.92.8e-2411
ENSP00000422742EST1PF10374.95e-1311
ENSP00000388390EST1_DNA_bindPF10373.94.8e-5511
ENSP00000421358EST1_DNA_bindPF10373.99.6e-5511
ENSP00000340766EST1_DNA_bindPF10373.91e-5411
ENSP00000426915EST1_DNA_bindPF10373.91e-5411
ENSP00000356507EST1_DNA_bindPF10373.91.1e-5411
ENSP00000425133EST1_DNA_bindPF10373.91.1e-5411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
25184677A post-translational regulatory switch on UPF1 controls targeted mRNA degradation.Genes Dev2014 Sep 1Kurosaki Tdoi: 10.1101/gad.245506.114.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000444547SMG7-206580-ENSP0000040022073 (aa)-E9PBK2
ENST00000367537SMG7-2025970XM_005245649ENSP000003565071170 (aa)XP_005245706E9PD50
ENST00000495321SMG7-209556--- (aa)--
ENST00000638826SMG7-216219-ENSP0000049267073 (aa)-E9PBK2
ENST00000419169SMG7-2042483-ENSP00000388390756 (aa)-B1ALB4
ENST00000493609SMG7-208624--- (aa)--
ENST00000508461SMG7-2143985XM_005245653ENSP000004269151145 (aa)XP_005245710Q92540
ENST00000507469SMG7-2124642-ENSP000004251331178 (aa)-Q92540
ENST00000493045SMG7-207673--- (aa)--
ENST00000367538SMG7-203328--- (aa)--
ENST00000507406SMG7-211582--- (aa)--
ENST00000440812SMG7-2051190-ENSP00000410254184 (aa)-E9PEK3
ENST00000502375SMG7-210566-ENSP0000042205656 (aa)-D6R9J3
ENST00000515829SMG7-2155629XM_006711678ENSP000004213581091 (aa)XP_006711741Q92540
ENST00000347615SMG7-2015788XM_005245652ENSP000003407661137 (aa)XP_005245709Q92540
ENST00000507691SMG7-213760-ENSP00000422742150 (aa)-D6RAD0
Gene Model
Click here to download ENSG00000116698's gene model file
Pathways
Pathway IDPathway NameSource
hsa03015mRNA surveillance pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000116698Platelet Function Tests2.2204460E-016-
ENSG00000116698Child Development Disorders, Pervasive1.4328000E-005-
ENSG00000116698Child Development Disorders, Pervasive3.0323000E-005-
ENSG00000116698Child Development Disorders, Pervasive5.0131000E-005-
ENSG00000116698Child Development Disorders, Pervasive2.5521000E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000116698rs178495021183563445TSystemic lupus erythematosus28714469[1.59-2.38]1.95EFO_0002690
ENSG00000116698rs178495011183573188?Systemic lupus erythematosus27399966[NR]2.24EFO_0002690
ENSG00000116698rs178495011183573188TSystemic lupus erythematosus26502338[NR]2.01EFO_0002690
ENSG00000116698rs133065751183563302ASystemic lupus erythematosus26606652[1.39-1.91]1.62EFO_0002690
ENSG00000116698rs27946191183490535?General cognitive ability29844566z-score increase5.396EFO_0004337
ENSG00000116698rs7891821183557968?Reaction time29844566[0.0053-0.0122] unit increase0.0087639EFO_0008393
ENSG00000116698rs178495021183563445TSystemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)30573655[1.16-1.59]1.36EFO_0000717|EFO_0000685|EFO_0000783|EFO_0002690
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000116698's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000116698SMG78592.994ENSAPOG00000009611smg79574.433Acanthochromis_polyacanthus
ENSG00000116698SMG710096.856ENSAMEG00000002357SMG710096.856Ailuropoda_melanoleuca
ENSG00000116698SMG77094.574ENSACIG00000015152smg710064.884Amphilophus_citrinellus
ENSG00000116698SMG78694.340ENSAOCG00000013538smg79966.838Amphiprion_ocellaris
ENSG00000116698SMG78694.340ENSAPEG00000007851smg79966.695Amphiprion_percula
ENSG00000116698SMG78694.340ENSATEG00000006931smg79966.299Anabas_testudineus
ENSG00000116698SMG710088.976ENSAPLG00000015811SMG710088.801Anas_platyrhynchos
ENSG00000116698SMG710087.532ENSACAG00000014989SMG79688.052Anolis_carolinensis
ENSG00000116698SMG7100100.000ENSANAG00000028114SMG710098.593Aotus_nancymaae
ENSG00000116698SMG78694.340ENSACLG00000022079smg79966.324Astatotilapia_calliptera
ENSG00000116698SMG78693.711ENSAMXG00000020809smg79968.028Astyanax_mexicanus
ENSG00000116698SMG710099.333ENSBTAG00000008003SMG710096.410Bos_taurus
ENSG00000116698SMG799100.000ENSCJAG00000005135SMG710098.370Callithrix_jacchus
ENSG00000116698SMG710098.667ENSCAFG00000013276SMG710097.265Canis_familiaris
ENSG00000116698SMG710098.667ENSCAFG00020015475SMG710097.265Canis_lupus_dingo
ENSG00000116698SMG710096.561ENSCHIG00000018192SMG79996.381Capra_hircus
ENSG00000116698SMG710098.667ENSTSYG00000002667SMG710097.449Carlito_syrichta
ENSG00000116698SMG710097.619ENSCPOG00000008906SMG710097.599Cavia_porcellus
ENSG00000116698SMG710098.690ENSCCAG00000028596SMG710098.690Cebus_capucinus
ENSG00000116698SMG7100100.000ENSCATG00000011063SMG710099.487Cercocebus_atys
ENSG00000116698SMG7100100.000ENSCLAG00000010751SMG710097.265Chinchilla_lanigera
ENSG00000116698SMG7100100.000ENSCSAG00000012654SMG710099.316Chlorocebus_sabaeus
ENSG00000116698SMG79693.827ENSCHOG00000010522SMG79988.541Choloepus_hoffmanni
ENSG00000116698SMG710091.906ENSCPBG00000015724SMG710091.499Chrysemys_picta_bellii
ENSG00000116698SMG78552.147ENSCING00000006953-9453.746Ciona_intestinalis
ENSG00000116698SMG710099.389ENSCANG00000015680SMG710099.389Colobus_angolensis_palliatus
ENSG00000116698SMG710096.429ENSCGRG00001013705Smg710096.141Cricetulus_griseus_chok1gshd
ENSG00000116698SMG710096.429ENSCGRG00000018401Smg710096.084Cricetulus_griseus_crigri
ENSG00000116698SMG78390.789ENSCSEG00000007392-8889.103Cynoglossus_semilaevis
ENSG00000116698SMG77989.189ENSCVAG00000011842smg79969.500Cyprinodon_variegatus
ENSG00000116698SMG78694.969ENSDARG00000060767smg79967.761Danio_rerio
ENSG00000116698SMG710096.958ENSDORG00000007331Smg710096.606Dipodomys_ordii
ENSG00000116698SMG710097.222ENSETEG00000002654SMG710096.286Echinops_telfairi
ENSG00000116698SMG710099.333ENSEASG00005006524SMG710097.778Equus_asinus_asinus
ENSG00000116698SMG710099.333ENSECAG00000004313SMG710097.863Equus_caballus
ENSG00000116698SMG710096.693ENSEEUG00000002024SMG79993.793Erinaceus_europaeus
ENSG00000116698SMG78694.340ENSELUG00000010293smg79966.515Esox_lucius
ENSG00000116698SMG79999.329ENSFCAG00000010900SMG710097.519Felis_catus
ENSG00000116698SMG710086.111ENSFALG00000003047SMG79886.024Ficedula_albicollis
ENSG00000116698SMG710097.354ENSFDAG00000012121SMG79997.148Fukomys_damarensis
ENSG00000116698SMG78890.062ENSFHEG00000011073smg79963.884Fundulus_heteroclitus
ENSG00000116698SMG78890.683ENSGMOG00000004916smg79267.883Gadus_morhua
ENSG00000116698SMG710089.336ENSGALG00000004667SMG710089.161Gallus_gallus
ENSG00000116698SMG79485.876ENSGAFG00000019000smg79964.397Gambusia_affinis
ENSG00000116698SMG78891.925ENSGACG00000001634smg79965.061Gasterosteus_aculeatus
ENSG00000116698SMG79589.655ENSGAGG00000024208-8695.062Gopherus_agassizii
ENSG00000116698SMG710099.603ENSGGOG00000002342SMG710099.563Gorilla_gorilla
ENSG00000116698SMG78694.340ENSHBUG00000003726smg79772.589Haplochromis_burtoni
ENSG00000116698SMG710097.354ENSHGLG00000009353SMG710097.237Heterocephalus_glaber_female
ENSG00000116698SMG710089.947ENSHGLG00100004878-9989.144Heterocephalus_glaber_male
ENSG00000116698SMG710097.274ENSHGLG00100009637-10097.274Heterocephalus_glaber_male
ENSG00000116698SMG79578.977ENSHCOG00000012804-8884.242Hippocampus_comes
ENSG00000116698SMG78693.711ENSIPUG00000016997smg79968.499Ictalurus_punctatus
ENSG00000116698SMG710097.892ENSSTOG00000000401SMG710097.998Ictidomys_tridecemlineatus
ENSG00000116698SMG710096.561ENSJJAG00000012351Smg79995.499Jaculus_jaculus
ENSG00000116698SMG79586.782ENSJJAG00000000309-9886.782Jaculus_jaculus
ENSG00000116698SMG77293.182ENSKMAG00000004900smg79770.500Kryptolebias_marmoratus
ENSG00000116698SMG77364.273ENSLBEG00000005220-7564.273Labrus_bergylta
ENSG00000116698SMG78492.903ENSLBEG00000002983smg79966.350Labrus_bergylta
ENSG00000116698SMG78694.969ENSLACG00000000972SMG79975.760Latimeria_chalumnae
ENSG00000116698SMG78892.683ENSLOCG00000002010smg79967.809Lepisosteus_oculatus
ENSG00000116698SMG710097.619ENSLAFG00000008186SMG710097.389Loxodonta_africana
ENSG00000116698SMG7100100.000ENSMFAG00000031653SMG710099.402Macaca_fascicularis
ENSG00000116698SMG7100100.000ENSMMUG00000018458SMG710099.487Macaca_mulatta
ENSG00000116698SMG710099.476ENSMNEG00000034798SMG710099.476Macaca_nemestrina
ENSG00000116698SMG7100100.000ENSMLEG00000037170SMG710099.487Mandrillus_leucophaeus
ENSG00000116698SMG78892.547ENSMAMG00000018733smg78565.377Mastacembelus_armatus
ENSG00000116698SMG78694.340ENSMZEG00005015247smg79965.897Maylandia_zebra
ENSG00000116698SMG79789.218ENSMGAG00000001561SMG79889.039Meleagris_gallopavo
ENSG00000116698SMG710096.958ENSMAUG00000019484Smg710096.519Mesocricetus_auratus
ENSG00000116698SMG710098.417ENSMICG00000007145SMG710098.417Microcebus_murinus
ENSG00000116698SMG710096.561ENSMOCG00000020748Smg710096.345Microtus_ochrogaster
ENSG00000116698SMG78590.446ENSMMOG00000001524smg79964.416Mola_mola
ENSG00000116698SMG710089.651ENSMODG00000007139SMG79993.169Monodelphis_domestica
ENSG00000116698SMG78793.125ENSMALG00000000061smg79568.657Monopterus_albus
ENSG00000116698SMG710096.032MGP_CAROLIEiJ_G0014704Smg710095.735Mus_caroli
ENSG00000116698SMG710095.899ENSMUSG00000042772Smg710095.997Mus_musculus
ENSG00000116698SMG710096.429MGP_PahariEiJ_G0027940Smg710096.084Mus_pahari
ENSG00000116698SMG710096.032MGP_SPRETEiJ_G0015511Smg710096.084Mus_spretus
ENSG00000116698SMG710097.354ENSMPUG00000011732SMG79797.237Mustela_putorius_furo
ENSG00000116698SMG710097.222ENSMLUG00000015417SMG79996.734Myotis_lucifugus
ENSG00000116698SMG710097.354ENSNGAG00000009836Smg710096.519Nannospalax_galili
ENSG00000116698SMG79861.304ENSNBRG00000024343smg79870.476Neolamprologus_brichardi
ENSG00000116698SMG7100100.000ENSNLEG00000018018SMG710099.658Nomascus_leucogenys
ENSG00000116698SMG78785.687ENSMEUG00000004681SMG78286.750Notamacropus_eugenii
ENSG00000116698SMG79987.268ENSOPRG00000013942SMG79684.475Ochotona_princeps
ENSG00000116698SMG710098.148ENSODEG00000010390SMG710097.302Octodon_degus
ENSG00000116698SMG78694.340ENSONIG00000000277smg79965.925Oreochromis_niloticus
ENSG00000116698SMG710091.041ENSOANG00000000994SMG710090.957Ornithorhynchus_anatinus
ENSG00000116698SMG710095.333ENSOCUG00000005887SMG79589.915Oryctolagus_cuniculus
ENSG00000116698SMG79385.965ENSORLG00000007314smg77785.965Oryzias_latipes
ENSG00000116698SMG78890.683ENSORLG00020015779smg77885.057Oryzias_latipes_hni
ENSG00000116698SMG78890.683ENSORLG00015012289smg79963.629Oryzias_latipes_hsok
ENSG00000116698SMG78890.683ENSOMEG00000002328smg79962.438Oryzias_melastigma
ENSG00000116698SMG710098.016ENSOGAG00000003107SMG710094.732Otolemur_garnettii
ENSG00000116698SMG710099.333ENSOARG00000001352SMG710096.239Ovis_aries
ENSG00000116698SMG710099.825ENSPPAG00000031619SMG710099.825Pan_paniscus
ENSG00000116698SMG79999.329ENSPPRG00000011222SMG710097.801Panthera_pardus
ENSG00000116698SMG710097.884ENSPTIG00000007242SMG710097.729Panthera_tigris_altaica
ENSG00000116698SMG710099.825ENSPTRG00000001764SMG710099.825Pan_troglodytes
ENSG00000116698SMG7100100.000ENSPANG00000004520SMG710099.487Papio_anubis
ENSG00000116698SMG78692.405ENSPKIG00000007242smg79968.500Paramormyrops_kingsleyae
ENSG00000116698SMG710091.667ENSPSIG00000012201SMG79991.557Pelodiscus_sinensis
ENSG00000116698SMG78585.987ENSPMGG00000002179-9381.065Periophthalmus_magnuspinnatus
ENSG00000116698SMG75957.000ENSPMGG00000021833smg77970.796Periophthalmus_magnuspinnatus
ENSG00000116698SMG710095.238ENSPEMG00000011315Smg710095.213Peromyscus_maniculatus_bairdii
ENSG00000116698SMG710093.630ENSPCIG00000003786SMG710093.409Phascolarctos_cinereus
ENSG00000116698SMG78691.824ENSPFOG00000019219smg79962.862Poecilia_formosa
ENSG00000116698SMG78691.824ENSPLAG00000001446smg79964.513Poecilia_latipinna
ENSG00000116698SMG78890.683ENSPMEG00000005218smg79963.790Poecilia_mexicana
ENSG00000116698SMG78890.062ENSPREG00000019039smg79161.759Poecilia_reticulata
ENSG00000116698SMG710099.736ENSPPYG00000000427SMG710099.736Pongo_abelii
ENSG00000116698SMG79884.024ENSPCAG00000008360SMG710084.024Procavia_capensis
ENSG00000116698SMG710098.667ENSPCOG00000011996SMG710098.350Propithecus_coquereli
ENSG00000116698SMG710090.621ENSPVAG00000000851SMG710085.544Pteropus_vampyrus
ENSG00000116698SMG78694.340ENSPNYG00000007643smg79966.179Pundamilia_nyererei
ENSG00000116698SMG78694.340ENSPNAG00000011374smg79869.697Pygocentrus_nattereri
ENSG00000116698SMG710096.296ENSRNOG00000027962Smg710096.296Rattus_norvegicus
ENSG00000116698SMG7100100.000ENSRBIG00000036316SMG710099.402Rhinopithecus_bieti
ENSG00000116698SMG7100100.000ENSRROG00000035719SMG710099.402Rhinopithecus_roxellana
ENSG00000116698SMG710099.457ENSSBOG00000023454SMG710099.457Saimiri_boliviensis_boliviensis
ENSG00000116698SMG710092.976ENSSHAG00000013147SMG710092.713Sarcophilus_harrisii
ENSG00000116698SMG78693.082ENSSFOG00015017252smg79976.842Scleropages_formosus
ENSG00000116698SMG78893.168ENSSMAG00000006067smg79965.978Scophthalmus_maximus
ENSG00000116698SMG78694.340ENSSDUG00000017543smg79965.850Seriola_dumerili
ENSG00000116698SMG78893.210ENSSLDG00000003750-9793.210Seriola_lalandi_dorsalis
ENSG00000116698SMG79990.371ENSSPUG00000002064SMG79990.194Sphenodon_punctatus
ENSG00000116698SMG78985.366ENSSPAG00000008733smg710065.891Stegastes_partitus
ENSG00000116698SMG710098.148ENSSSCG00000015558SMG710097.525Sus_scrofa
ENSG00000116698SMG79989.251ENSTGUG00000003928SMG710089.163Taeniopygia_guttata
ENSG00000116698SMG79283.529ENSTRUG00000003612-9283.529Takifugu_rubripes
ENSG00000116698SMG78689.375ENSTNIG00000002802smg79963.697Tetraodon_nigroviridis
ENSG00000116698SMG77896.610ENSTBEG00000003220SMG78193.562Tupaia_belangeri
ENSG00000116698SMG710097.751ENSTTRG00000014778SMG710095.986Tursiops_truncatus
ENSG00000116698SMG710097.487ENSUAMG00000017473SMG710097.426Ursus_americanus
ENSG00000116698SMG710097.487ENSUMAG00000016389SMG710097.426Ursus_maritimus
ENSG00000116698SMG75597.917ENSVPAG00000005367-6297.917Vicugna_pacos
ENSG00000116698SMG710098.667ENSVVUG00000008976SMG710097.434Vulpes_vulpes
ENSG00000116698SMG78991.463ENSXETG00000012528smg710070.859Xenopus_tropicalis
ENSG00000116698SMG78692.453ENSXMAG00000007123smg79964.464Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay16488880.TASProcess
GO:0005515protein binding14636577.20930030.23348841.IPIFunction
GO:0005634nucleus14636577.IDAComponent
GO:0005697telomerase holoenzyme complex21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm14636577.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0006406mRNA export from nucleus16488880.TASProcess
GO:0007004telomere maintenance via telomerase21873635.IBAProcess
GO:0032210regulation of telomere maintenance via telomerase21873635.IBAProcess
GO:0035303regulation of dephosphorylation15721257.TASProcess
GO:0042162telomeric DNA binding21873635.IBAFunction
GO:0042162telomeric DNA binding17916692.IDAFunction
GO:0045111intermediate filament cytoskeleton-IDAComponent
GO:0051721protein phosphatase 2A binding14636577.IDAFunction
GO:0070034telomerase RNA binding21873635.IBAFunction

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