EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000116918 (Gene tree)
Gene ID
7257
Gene Symbol
TSNAX
Alias
TRAX|C3PO
Full Name
translin associated factor X
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
37,872 bases
Position
chr1:231,528,653-231,566,524
Accession
12380
RBP type
canonical RBP
Summary
This gene encodes a protein which specifically interacts with translin, a DNA-binding protein that binds consensus sequences at breakpoint junctions of chromosomal translocations. The encoded protein contains bipartite nuclear targeting sequences that may provide nuclear transport for translin, which lacks any nuclear targeting motifs. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000355599TranslinPF01997.162.5e-6011
ENSP00000397537TranslinPF01997.162.3e-2711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
10471275Protein-protein interactions between the testis brain RNA-binding protein and the transitional endoplasmic reticulum ATPase, a cytoskeletal gamma actin and Trax in male germ cells and the brain.Biochemistry1999 Aug 31Wu XQ-
12944470Mice deficient for testis-brain RNA-binding protein exhibit a coordinate loss of TRAX, reduced fertility, altered gene expression in the brain, and behavioral changes.Mol Cell Biol2003 SepChennathukuzhi V-
15474041Translin associated protein X is essential for cellular proliferation.FEBS Lett2004 Oct 8Yang S-
15138261The relative levels of translin-associated factor X (TRAX) and testis brain RNA-binding protein determine their nucleocytoplasmic distribution in male germ cells.J Biol Chem2004 Jul 23Cho YS-
18424275The Translin/Trax RNA binding complex: clues to function in the nervous system.Biochim Biophys Acta2008 AugLi Zdoi: 10.1016/j.bbagrm.2008.03.008
30172368Translin modulates mesenchymal cell proliferation and differentiation in mice.Biochem Biophys Res Commun2018 Sep 26Ikeuchi Ydoi: 10.1016/j.bbrc.2018.08.141
14741401High affinity binding of the Translin/Trax complex to RNA does not require the presence of Y or H elements.Brain Res Mol Brain Res2004 Jan 5Li Z-
12358744Trax is a component of the Translin-containing RNA binding complex.J Neurochem2002 OctFinkenstadt PM-
11389888Masking of the Translin/Trax complex by endogenous RNA.FEBS Lett2001 Jun 1Finkenstadt PM-
11278549Trax (translin-associated factor X), a primarily cytoplasmic protein, inhibits the binding of TB-RBP (translin) to RNA.J Biol Chem2001 Apr 20Chennathukuzhi VM-
10987859Somatodendritic localization of Translin, a component of the Translin/Trax RNA binding complex.J Neurochem2000 OctFinkenstadt PM-
15947549Proteomic analysis of differentially expressed proteins between metastatic and non-metastatic human colorectal carcinoma cell lines.Eur J Gastroenterol Hepatol2005 JulYing-Tao Z-
27183912Translin and Trax differentially regulate telomere-associated transcript homeostasis.Oncotarget2016 Jun 7Gomez-Escobar Ndoi: 10.18632/oncotarget.9278.
22889834Phospholipase Cβ1 is linked to RNA interference of specific genes through translin-associated factor X.FASEB J2012 DecPhilip Fdoi: 10.1096/fj.12-213934
22427937Identification of nucleic acid binding sites on translin-associated factor X (TRAX) protein.PLoS One2012Gupta GDdoi: 10.1371/journal.pone.0033035
25659154ABCE1 is a highly conserved RNA silencing suppressor.PLoS One2015 Feb 6Karblane Kdoi: 10.1371/journal.pone.0116702
27624933Phospholipase Cβ-TRAX Association Is Required for PC12 Cell Differentiation.J Biol Chem2016 Oct 28Garwain O-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000366639TSNAX-2012650-ENSP00000355599290 (aa)-Q99598
ENST00000475168TSNAX-2035629--- (aa)--
ENST00000602825TSNAX-205585--- (aa)--
ENST00000413309TSNAX-202646-ENSP00000397537163 (aa)-Q5VVQ1
ENST00000476913TSNAX-204581--- (aa)--
Gene Model
Click here to download ENSG00000116918's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000116918's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000116918TSNAX9964.014ENSAPOG00000011188tsnax9964.014Acanthochromis_polyacanthus
ENSG00000116918TSNAX10097.586ENSAMEG00000002637-10097.586Ailuropoda_melanoleuca
ENSG00000116918TSNAX9964.236ENSACIG00000005910tsnax9964.236Amphilophus_citrinellus
ENSG00000116918TSNAX9965.398ENSAOCG00000012857tsnax9965.398Amphiprion_ocellaris
ENSG00000116918TSNAX9965.052ENSAPEG00000024161tsnax9869.231Amphiprion_percula
ENSG00000116918TSNAX9966.090ENSATEG00000014674tsnax9966.090Anabas_testudineus
ENSG00000116918TSNAX9880.769ENSAPLG00000013433-9880.769Anas_platyrhynchos
ENSG00000116918TSNAX10080.412ENSACAG00000002787-10080.756Anolis_carolinensis
ENSG00000116918TSNAX10098.966ENSANAG00000023733-10098.966Aotus_nancymaae
ENSG00000116918TSNAX7267.143ENSACLG00000023252tsnax8667.143Astatotilapia_calliptera
ENSG00000116918TSNAX10061.034ENSAMXG00000024558tsnax10061.034Astyanax_mexicanus
ENSG00000116918TSNAX10097.241ENSBTAG00000047434TSNAX10097.241Bos_taurus
ENSG00000116918TSNAX10098.966ENSCJAG00000039956-10098.966Callithrix_jacchus
ENSG00000116918TSNAX10097.241ENSCAFG00000030982-10097.241Canis_familiaris
ENSG00000116918TSNAX10097.241ENSCAFG00020027186-10097.241Canis_lupus_dingo
ENSG00000116918TSNAX10096.897ENSCHIG00000012051-10096.897Capra_hircus
ENSG00000116918TSNAX10097.931ENSTSYG00000026820-10097.931Carlito_syrichta
ENSG00000116918TSNAX8698.394ENSTSYG00000014070-9998.394Carlito_syrichta
ENSG00000116918TSNAX8596.761ENSCAPG00000007224-9596.761Cavia_aperea
ENSG00000116918TSNAX10096.552ENSCPOG00000036257-10096.552Cavia_porcellus
ENSG00000116918TSNAX10098.966ENSCCAG00000025312-10098.966Cebus_capucinus
ENSG00000116918TSNAX10098.966ENSCATG00000037048TSNAX10098.966Cercocebus_atys
ENSG00000116918TSNAX10096.207ENSCLAG00000004894-10096.207Chinchilla_lanigera
ENSG00000116918TSNAX10098.621ENSCSAG00000010285TSNAX10098.621Chlorocebus_sabaeus
ENSG00000116918TSNAX8695.181ENSCHOG00000009515-10095.181Choloepus_hoffmanni
ENSG00000116918TSNAX10082.131ENSCPBG00000006086-10082.131Chrysemys_picta_bellii
ENSG00000116918TSNAX10098.276ENSCANG00000018814TSNAX10098.276Colobus_angolensis_palliatus
ENSG00000116918TSNAX10092.414ENSCGRG00001011132Tsnax10092.414Cricetulus_griseus_chok1gshd
ENSG00000116918TSNAX10092.414ENSCGRG00000017310Tsnax10092.414Cricetulus_griseus_crigri
ENSG00000116918TSNAX9666.071ENSCSEG00000013110tsnax9966.071Cynoglossus_semilaevis
ENSG00000116918TSNAX9957.439ENSCVAG00000003427tsnax9957.439Cyprinodon_variegatus
ENSG00000116918TSNAX10063.448ENSDARG00000115282tsnax10063.448Danio_rerio
ENSG00000116918TSNAX10096.564ENSDNOG00000049219-10096.564Dasypus_novemcinctus
ENSG00000116918TSNAX9290.262ENSDORG00000013537Tsnax9990.262Dipodomys_ordii
ENSG00000116918TSNAX9236.525FBgn0038327Trax9336.525Drosophila_melanogaster
ENSG00000116918TSNAX7197.500ENSETEG00000005204-7197.500Echinops_telfairi
ENSG00000116918TSNAX8256.379ENSEBUG00000013286tsnax9456.379Eptatretus_burgeri
ENSG00000116918TSNAX10097.586ENSEASG00005012828-10097.586Equus_asinus_asinus
ENSG00000116918TSNAX10075.517ENSEEUG00000001465-10075.517Erinaceus_europaeus
ENSG00000116918TSNAX10065.306ENSELUG00000018955tsnax9965.306Esox_lucius
ENSG00000116918TSNAX8067.939ENSFCAG00000039622-9970.400Felis_catus
ENSG00000116918TSNAX10096.897ENSFCAG00000028088-10096.897Felis_catus
ENSG00000116918TSNAX9880.634ENSFALG00000003260-9980.634Ficedula_albicollis
ENSG00000116918TSNAX9896.127ENSFDAG00000015968-10096.127Fukomys_damarensis
ENSG00000116918TSNAX9964.505ENSFHEG00000005717tsnax9964.684Fundulus_heteroclitus
ENSG00000116918TSNAX9365.809ENSGMOG00000018552tsnax9965.809Gadus_morhua
ENSG00000116918TSNAX10080.756ENSGALG00000037177TSNAX10080.756Gallus_gallus
ENSG00000116918TSNAX9965.068ENSGAFG00000005000tsnax9965.068Gambusia_affinis
ENSG00000116918TSNAX8968.321ENSGACG00000004171tsnax9168.321Gasterosteus_aculeatus
ENSG00000116918TSNAX10081.787ENSGAGG00000012851-10081.787Gopherus_agassizii
ENSG00000116918TSNAX100100.000ENSGGOG00000039786TSNAX100100.000Gorilla_gorilla
ENSG00000116918TSNAX9965.052ENSHBUG00000020612tsnax9965.052Haplochromis_burtoni
ENSG00000116918TSNAX10097.241ENSHGLG00000012839TSNAX10097.241Heterocephalus_glaber_female
ENSG00000116918TSNAX10095.517ENSHGLG00100000780-10095.517Heterocephalus_glaber_male
ENSG00000116918TSNAX9964.460ENSHCOG00000009732tsnax9964.460Hippocampus_comes
ENSG00000116918TSNAX9961.775ENSIPUG00000018757tsnax10061.775Ictalurus_punctatus
ENSG00000116918TSNAX10089.571ENSSTOG00000024989-9893.333Ictidomys_tridecemlineatus
ENSG00000116918TSNAX9573.381ENSJJAG00000012285-10073.381Jaculus_jaculus
ENSG00000116918TSNAX10090.690ENSJJAG00000000228-10090.690Jaculus_jaculus
ENSG00000116918TSNAX10064.828ENSKMAG00000010607tsnax10064.828Kryptolebias_marmoratus
ENSG00000116918TSNAX9968.166ENSLBEG00000023264tsnax9968.166Labrus_bergylta
ENSG00000116918TSNAX9270.896ENSLBEG00000002951-9370.896Labrus_bergylta
ENSG00000116918TSNAX10072.789ENSLACG00000006294tsnax10072.789Latimeria_chalumnae
ENSG00000116918TSNAX10068.475ENSLOCG00000015831tsnax10068.475Lepisosteus_oculatus
ENSG00000116918TSNAX10087.075ENSLAFG00000006692-10087.075Loxodonta_africana
ENSG00000116918TSNAX10098.966ENSMFAG00000038495TSNAX10098.966Macaca_fascicularis
ENSG00000116918TSNAX10095.706ENSMMUG00000016204TSNAX8999.394Macaca_mulatta
ENSG00000116918TSNAX10098.966ENSMNEG00000038898TSNAX10098.966Macaca_nemestrina
ENSG00000116918TSNAX10098.621ENSMLEG00000004157TSNAX10098.621Mandrillus_leucophaeus
ENSG00000116918TSNAX9665.957ENSMAMG00000016932tsnax9965.957Mastacembelus_armatus
ENSG00000116918TSNAX9965.052ENSMZEG00005010018tsnax9965.052Maylandia_zebra
ENSG00000116918TSNAX9880.070ENSMGAG00000011981-10080.070Meleagris_gallopavo
ENSG00000116918TSNAX10089.571ENSMAUG00000019962Tsnax9892.727Mesocricetus_auratus
ENSG00000116918TSNAX10097.241ENSMICG00000043895-10097.241Microcebus_murinus
ENSG00000116918TSNAX10093.448ENSMOCG00000007651Tsnax10093.448Microtus_ochrogaster
ENSG00000116918TSNAX8869.020ENSMMOG00000008821tsnax9169.020Mola_mola
ENSG00000116918TSNAX8885.490ENSMODG00000008812-10085.490Monodelphis_domestica
ENSG00000116918TSNAX9965.052ENSMALG00000005640tsnax9965.052Monopterus_albus
ENSG00000116918TSNAX10090.345MGP_CAROLIEiJ_G0031718Tsnax10090.345Mus_caroli
ENSG00000116918TSNAX10090.690ENSMUSG00000056820Tsnax10090.690Mus_musculus
ENSG00000116918TSNAX10091.034MGP_PahariEiJ_G0023316Tsnax10091.034Mus_pahari
ENSG00000116918TSNAX10090.690MGP_SPRETEiJ_G0032836Tsnax10090.690Mus_spretus
ENSG00000116918TSNAX10097.586ENSMPUG00000005572-10097.586Mustela_putorius_furo
ENSG00000116918TSNAX9891.638ENSMLUG00000015591-9891.638Myotis_lucifugus
ENSG00000116918TSNAX5894.675ENSMLUG00000028551-10094.675Myotis_lucifugus
ENSG00000116918TSNAX10094.483ENSNGAG00000014498Tsnax10094.483Nannospalax_galili
ENSG00000116918TSNAX9265.799ENSNBRG00000020060tsnax9864.085Neolamprologus_brichardi
ENSG00000116918TSNAX10099.310ENSNLEG00000035882TSNAX10099.310Nomascus_leucogenys
ENSG00000116918TSNAX10081.100ENSOPRG00000008613-10081.100Ochotona_princeps
ENSG00000116918TSNAX10093.865ENSODEG00000005475-9897.576Octodon_degus
ENSG00000116918TSNAX9869.366ENSODEG00000000115-10069.366Octodon_degus
ENSG00000116918TSNAX9965.744ENSONIG00000010125tsnax9965.744Oreochromis_niloticus
ENSG00000116918TSNAX9879.720ENSOANG00000013721-10079.720Ornithorhynchus_anatinus
ENSG00000116918TSNAX10097.241ENSOCUG00000029456-10097.241Oryctolagus_cuniculus
ENSG00000116918TSNAX10064.138ENSORLG00000030285tsnax10064.138Oryzias_latipes
ENSG00000116918TSNAX10063.793ENSORLG00020007594tsnax10063.793Oryzias_latipes_hni
ENSG00000116918TSNAX10064.483ENSORLG00015022705tsnax10064.483Oryzias_latipes_hsok
ENSG00000116918TSNAX10062.759ENSOMEG00000019256tsnax10062.759Oryzias_melastigma
ENSG00000116918TSNAX9995.819ENSOGAG00000005575-9995.819Otolemur_garnettii
ENSG00000116918TSNAX10095.517ENSOGAG00000027793-10095.517Otolemur_garnettii
ENSG00000116918TSNAX10096.897ENSOARG00000003276-10096.897Ovis_aries
ENSG00000116918TSNAX100100.000ENSPPAG00000030431TSNAX100100.000Pan_paniscus
ENSG00000116918TSNAX10096.552ENSPPRG00000013142-10096.552Panthera_pardus
ENSG00000116918TSNAX8466.423ENSPPRG00000015159-9969.231Panthera_pardus
ENSG00000116918TSNAX10096.552ENSPTIG00000014357-10096.552Panthera_tigris_altaica
ENSG00000116918TSNAX10099.655ENSPTRG00000002111TSNAX10099.655Pan_troglodytes
ENSG00000116918TSNAX10098.966ENSPANG00000008379TSNAX10098.966Papio_anubis
ENSG00000116918TSNAX9868.421ENSPKIG00000023546tsnax9868.421Paramormyrops_kingsleyae
ENSG00000116918TSNAX6183.708ENSPSIG00000005320-10083.708Pelodiscus_sinensis
ENSG00000116918TSNAX9069.434ENSPMGG00000015045tsnax9369.434Periophthalmus_magnuspinnatus
ENSG00000116918TSNAX9964.384ENSPFOG00000019341tsnax9964.384Poecilia_formosa
ENSG00000116918TSNAX9963.793ENSPLAG00000011565tsnax9963.793Poecilia_latipinna
ENSG00000116918TSNAX8054.135ENSPMEG00000023599tsnax9557.143Poecilia_mexicana
ENSG00000116918TSNAX9964.706ENSPMEG00000023751tsnax9964.706Poecilia_mexicana
ENSG00000116918TSNAX9962.671ENSPREG00000008389tsnax9962.671Poecilia_reticulata
ENSG00000116918TSNAX100100.000ENSPPYG00000000112TSNAX100100.000Pongo_abelii
ENSG00000116918TSNAX8697.590ENSPCAG00000015420-10097.590Procavia_capensis
ENSG00000116918TSNAX10097.241ENSPCOG00000028517-10097.241Propithecus_coquereli
ENSG00000116918TSNAX10094.138ENSPVAG00000008865-10094.138Pteropus_vampyrus
ENSG00000116918TSNAX9964.706ENSPNYG00000013680tsnax9964.706Pundamilia_nyererei
ENSG00000116918TSNAX9864.912ENSPNAG00000014630tsnax9864.912Pygocentrus_nattereri
ENSG00000116918TSNAX10090.345ENSRNOG00000049784Tsnax10090.345Rattus_norvegicus
ENSG00000116918TSNAX10098.621ENSRBIG00000040246TSNAX10098.621Rhinopithecus_bieti
ENSG00000116918TSNAX10098.621ENSRROG00000044480TSNAX10098.621Rhinopithecus_roxellana
ENSG00000116918TSNAX10098.621ENSSBOG00000024783-10098.621Saimiri_boliviensis_boliviensis
ENSG00000116918TSNAX7383.491ENSSHAG00000006139-10083.491Sarcophilus_harrisii
ENSG00000116918TSNAX10067.458ENSSFOG00015008267tsnax10067.458Scleropages_formosus
ENSG00000116918TSNAX9966.552ENSSMAG00000010696tsnax9966.207Scophthalmus_maximus
ENSG00000116918TSNAX9966.090ENSSDUG00000003358tsnax9966.090Seriola_dumerili
ENSG00000116918TSNAX9966.782ENSSLDG00000024597tsnax9966.782Seriola_lalandi_dorsalis
ENSG00000116918TSNAX9993.056ENSSARG00000011348-9993.056Sorex_araneus
ENSG00000116918TSNAX10081.443ENSSPUG00000012541-10081.443Sphenodon_punctatus
ENSG00000116918TSNAX9964.706ENSSPAG00000006951tsnax9964.912Stegastes_partitus
ENSG00000116918TSNAX10096.207ENSSSCG00000010171TSNAX10096.207Sus_scrofa
ENSG00000116918TSNAX9981.379ENSTGUG00000010090-9981.379Taeniopygia_guttata
ENSG00000116918TSNAX8964.615ENSTRUG00000013041tsnax9164.615Takifugu_rubripes
ENSG00000116918TSNAX9064.639ENSTNIG00000002351tsnax9164.639Tetraodon_nigroviridis
ENSG00000116918TSNAX10069.325ENSTBEG00000015973-10067.241Tupaia_belangeri
ENSG00000116918TSNAX8696.386ENSTTRG00000016578-10096.386Tursiops_truncatus
ENSG00000116918TSNAX5097.260ENSUAMG00000002616-10097.260Ursus_americanus
ENSG00000116918TSNAX10093.865ENSUAMG00000013798-9896.970Ursus_americanus
ENSG00000116918TSNAX9894.737ENSUMAG00000005995-9994.737Ursus_maritimus
ENSG00000116918TSNAX10092.638ENSVPAG00000003808-10095.745Vicugna_pacos
ENSG00000116918TSNAX10097.241ENSVVUG00000007083-10097.241Vulpes_vulpes
ENSG00000116918TSNAX9963.758ENSXETG00000026152tsnax10063.758Xenopus_tropicalis
ENSG00000116918TSNAX9964.706ENSXCOG00000006896tsnax9964.706Xiphophorus_couchianus
ENSG00000116918TSNAX9964.014ENSXMAG00000006738tsnax9964.014Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding9013868.TASFunction
GO:0003697single-stranded DNA binding21873635.IBAFunction
GO:0003723RNA binding22681889.HDAFunction
GO:0004521endoribonuclease activity21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005794Golgi apparatus-IEAComponent
GO:0005829cytosol-TASComponent
GO:0007275multicellular organism development-IEAProcess
GO:0007283spermatogenesis-IEAProcess
GO:0008565protein transporter activity9013868.TASFunction
GO:0015031protein transport-IEAProcess
GO:0030154cell differentiation-IEAProcess
GO:0030422production of siRNA involved in RNA interference-TASProcess
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0046872metal ion binding-IEAFunction
GO:0048471perinuclear region of cytoplasm-IEAComponent
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic-IEAProcess

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