EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000117360 (Gene tree)
Gene ID
9129
Gene Symbol
PRPF3
Alias
Prp3|hPrp3|SNRNP90|RP18
Full Name
pre-mRNA processing factor 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
31,753 bases
Position
chr1:150,321,476-150,353,228
Accession
17348
RBP type
canonical RBP
Summary
The removal of introns from nuclear pre-mRNAs occurs on complexes called spliceosomes, which are made up of 4 small nuclear ribonucleoprotein (snRNP) particles and an undefined number of transiently associated splicing factors. This gene product is one of several proteins that associate with U4 and U6 snRNPs. Mutations in this gene are associated with retinitis pigmentosa-18. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000315379PRP3PF08572.107.6e-7911
ENSP00000315379PWIPF01480.171.2e-1211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
26161500A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing.Elife2015 Jul 10Liu Sdoi: 10.7554/eLife.07320.
26503251Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET.Nucleic Acids Res2015 Dec 15Hardin JWdoi: 10.1093/nar/gkv1011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000496202PRPF3-2071082--- (aa)--
ENST00000324862PRPF3-2012433XM_011510130ENSP00000315379683 (aa)XP_011508432O43395
ENST00000470824PRPF3-204898--- (aa)--
ENST00000467329PRPF3-2022595--- (aa)--
ENST00000467514PRPF3-2031097--- (aa)--
ENST00000493553PRPF3-206516--- (aa)--
ENST00000476970PRPF3-2051005--- (aa)--
Gene Model
Click here to download ENSG00000117360's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000117360Attention Deficit Disorder with Hyperactivity7E-623453885
ENSG00000117360Bipolar Disorder7E-623453885
ENSG00000117360Child Development Disorders, Pervasive7E-623453885
ENSG00000117360Depressive Disorder7E-623453885
ENSG00000117360Schizophrenia7E-623453885
ENSG00000117360Eye3E-727560520
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000117360rs2019831681150342506TACACEye morphology27560520[0.29-0.69] unit decrease0.4915EFO_0007858
ENSG00000117360rs560470901150343248?Low density lipoprotein cholesterol levels30498476EFO_0004611
ENSG00000117360rs1830916091150336730?Heel bone mineral density30595370EFO_0009270
ENSG00000117360rs27946811150349475TMorning person306968231.0404EFO_0008328
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000117360's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000117360PRPF310071.751ENSAPOG00000015584prpf39972.316Acanthochromis_polyacanthus
ENSG00000117360PRPF310099.854ENSAMEG00000001630PRPF310099.854Ailuropoda_melanoleuca
ENSG00000117360PRPF310071.994ENSACIG00000007876prpf39971.004Amphilophus_citrinellus
ENSG00000117360PRPF310071.045ENSAOCG00000011449prpf39972.262Amphiprion_ocellaris
ENSG00000117360PRPF310071.266ENSATEG00000023583prpf39971.693Anabas_testudineus
ENSG00000117360PRPF310095.029ENSAPLG00000002440PRPF310095.029Anas_platyrhynchos
ENSG00000117360PRPF310092.576ENSACAG00000003176PRPF310092.868Anolis_carolinensis
ENSG00000117360PRPF3100100.000ENSANAG00000026138PRPF3100100.000Aotus_nancymaae
ENSG00000117360PRPF310072.294ENSACLG00000020127prpf39972.006Astatotilapia_calliptera
ENSG00000117360PRPF310073.803ENSAMXG00000007306prpf39973.380Astyanax_mexicanus
ENSG00000117360PRPF3100100.000ENSBTAG00000013946PRPF3100100.000Bos_taurus
ENSG00000117360PRPF38138.790WBGene00010844prp-38238.929Caenorhabditis_elegans
ENSG00000117360PRPF3100100.000ENSCJAG00000009926PRPF3100100.000Callithrix_jacchus
ENSG00000117360PRPF3100100.000ENSCAFG00000011820PRPF3100100.000Canis_familiaris
ENSG00000117360PRPF380100.000ENSCAFG00020019653PRPF3100100.000Canis_lupus_dingo
ENSG00000117360PRPF3100100.000ENSCHIG00000015434PRPF3100100.000Capra_hircus
ENSG00000117360PRPF310099.414ENSTSYG00000001383PRPF310099.414Carlito_syrichta
ENSG00000117360PRPF39382.390ENSCAPG00000017812PRPF39582.862Cavia_aperea
ENSG00000117360PRPF310099.561ENSCPOG00000008068PRPF310099.561Cavia_porcellus
ENSG00000117360PRPF3100100.000ENSCCAG00000026380PRPF3100100.000Cebus_capucinus
ENSG00000117360PRPF310084.593ENSCATG00000041778PRPF310084.593Cercocebus_atys
ENSG00000117360PRPF310099.854ENSCLAG00000015009PRPF310099.854Chinchilla_lanigera
ENSG00000117360PRPF377100.000ENSCHOG00000011645PRPF377100.000Choloepus_hoffmanni
ENSG00000117360PRPF310096.345ENSCPBG00000008216PRPF310096.345Chrysemys_picta_bellii
ENSG00000117360PRPF36159.189ENSCING00000003312-9958.711Ciona_intestinalis
ENSG00000117360PRPF38354.035ENSCSAVG00000008720-9454.792Ciona_savignyi
ENSG00000117360PRPF310099.268ENSCANG00000036769PRPF310099.268Colobus_angolensis_palliatus
ENSG00000117360PRPF3100100.000ENSCGRG00001019100Prpf3100100.000Cricetulus_griseus_chok1gshd
ENSG00000117360PRPF3100100.000ENSCGRG00000007322Prpf3100100.000Cricetulus_griseus_crigri
ENSG00000117360PRPF310072.011ENSCSEG00000002532prpf39970.605Cynoglossus_semilaevis
ENSG00000117360PRPF310072.624ENSCVAG00000009318prpf39972.340Cyprinodon_variegatus
ENSG00000117360PRPF310072.973ENSDARG00000086425prpf39972.688Danio_rerio
ENSG00000117360PRPF310089.458ENSDNOG00000005904PRPF310090.630Dasypus_novemcinctus
ENSG00000117360PRPF39399.685ENSDORG00000008664Prpf310099.685Dipodomys_ordii
ENSG00000117360PRPF38153.086FBgn0036915Prp39953.273Drosophila_melanogaster
ENSG00000117360PRPF310098.536ENSETEG00000019124PRPF310098.536Echinops_telfairi
ENSG00000117360PRPF310063.934ENSEBUG00000011680prpf39963.934Eptatretus_burgeri
ENSG00000117360PRPF310099.854ENSEASG00005001566PRPF310099.854Equus_asinus_asinus
ENSG00000117360PRPF3100100.000ENSECAG00000019840PRPF3100100.000Equus_caballus
ENSG00000117360PRPF38599.291ENSEEUG00000007338PRPF38599.291Erinaceus_europaeus
ENSG00000117360PRPF310065.906ENSELUG00000013624prpf39966.334Esox_lucius
ENSG00000117360PRPF3100100.000ENSFCAG00000013940PRPF3100100.000Felis_catus
ENSG00000117360PRPF310099.414ENSFDAG00000010365PRPF310099.414Fukomys_damarensis
ENSG00000117360PRPF310073.132ENSFHEG00000021746prpf39972.845Fundulus_heteroclitus
ENSG00000117360PRPF310071.287ENSGMOG00000008535prpf39971.146Gadus_morhua
ENSG00000117360PRPF310094.883ENSGALG00000028205PRPF310094.883Gallus_gallus
ENSG00000117360PRPF310072.350ENSGAFG00000012671prpf39972.063Gambusia_affinis
ENSG00000117360PRPF310070.963ENSGACG00000011792prpf39971.246Gasterosteus_aculeatus
ENSG00000117360PRPF310096.053ENSGAGG00000013765PRPF310095.811Gopherus_agassizii
ENSG00000117360PRPF386100.000ENSGGOG00000013174PRPF3100100.000Gorilla_gorilla
ENSG00000117360PRPF310072.727ENSHBUG00000003493prpf39972.439Haplochromis_burtoni
ENSG00000117360PRPF310070.278ENSHGLG00000016033-10070.864Heterocephalus_glaber_female
ENSG00000117360PRPF310099.561ENSHGLG00000016569PRPF310099.561Heterocephalus_glaber_female
ENSG00000117360PRPF310070.864ENSHGLG00100008951-9590.909Heterocephalus_glaber_male
ENSG00000117360PRPF310099.561ENSHGLG00100007590PRPF310099.561Heterocephalus_glaber_male
ENSG00000117360PRPF310068.563ENSHCOG00000014058prpf39968.279Hippocampus_comes
ENSG00000117360PRPF310073.466ENSIPUG00000000902PRPF39973.789Ictalurus_punctatus
ENSG00000117360PRPF3100100.000ENSSTOG00000001889PRPF3100100.000Ictidomys_tridecemlineatus
ENSG00000117360PRPF310070.881ENSKMAG00000001390prpf39970.597Kryptolebias_marmoratus
ENSG00000117360PRPF310070.266ENSLBEG00000026310prpf39971.186Labrus_bergylta
ENSG00000117360PRPF39382.418ENSLACG00000010541PRPF310082.575Latimeria_chalumnae
ENSG00000117360PRPF310099.707ENSLAFG00000004713PRPF310099.707Loxodonta_africana
ENSG00000117360PRPF3100100.000ENSMFAG00000039791PRPF3100100.000Macaca_fascicularis
ENSG00000117360PRPF390100.000ENSMMUG00000016301PRPF398100.000Macaca_mulatta
ENSG00000117360PRPF3100100.000ENSMNEG00000038161PRPF3100100.000Macaca_nemestrina
ENSG00000117360PRPF39967.257ENSMLEG00000041065-9866.667Mandrillus_leucophaeus
ENSG00000117360PRPF386100.000ENSMLEG00000040609PRPF3100100.000Mandrillus_leucophaeus
ENSG00000117360PRPF310071.955ENSMAMG00000014968prpf39971.813Mastacembelus_armatus
ENSG00000117360PRPF310070.687ENSMZEG00005015970prpf39970.365Maylandia_zebra
ENSG00000117360PRPF310094.883ENSMGAG00000000707PRPF310094.883Meleagris_gallopavo
ENSG00000117360PRPF310099.707ENSMAUG00000017112Prpf310099.707Mesocricetus_auratus
ENSG00000117360PRPF310099.707ENSMICG00000015386PRPF310099.707Microcebus_murinus
ENSG00000117360PRPF310099.854ENSMOCG00000000242Prpf310099.854Microtus_ochrogaster
ENSG00000117360PRPF310066.432ENSMMOG00000016131prpf39967.234Mola_mola
ENSG00000117360PRPF310098.389ENSMODG00000018774PRPF310098.389Monodelphis_domestica
ENSG00000117360PRPF310070.429ENSMALG00000007257prpf39970.429Monopterus_albus
ENSG00000117360PRPF310099.561MGP_CAROLIEiJ_G0025354Prpf310099.561Mus_caroli
ENSG00000117360PRPF310099.561ENSMUSG00000015748Prpf310099.561Mus_musculus
ENSG00000117360PRPF310099.414MGP_PahariEiJ_G0026798Prpf310099.414Mus_pahari
ENSG00000117360PRPF310099.561MGP_SPRETEiJ_G0026298Prpf310099.561Mus_spretus
ENSG00000117360PRPF310096.633ENSMPUG00000005080PRPF310096.633Mustela_putorius_furo
ENSG00000117360PRPF310099.269ENSMLUG00000004646-10099.269Myotis_lucifugus
ENSG00000117360PRPF3100100.000ENSNGAG00000000910Prpf3100100.000Nannospalax_galili
ENSG00000117360PRPF310070.531ENSNBRG00000003462prpf39970.251Neolamprologus_brichardi
ENSG00000117360PRPF390100.000ENSNLEG00000009841PRPF3100100.000Nomascus_leucogenys
ENSG00000117360PRPF383100.000ENSMEUG00000008733PRPF389100.000Notamacropus_eugenii
ENSG00000117360PRPF310099.414ENSOPRG00000010139PRPF310099.414Ochotona_princeps
ENSG00000117360PRPF310099.268ENSODEG00000011363-10099.268Octodon_degus
ENSG00000117360PRPF310073.768ENSODEG00000014412-10073.768Octodon_degus
ENSG00000117360PRPF310070.646ENSONIG00000006394prpf39970.506Oreochromis_niloticus
ENSG00000117360PRPF310065.462ENSOANG00000015441PRPF310065.262Ornithorhynchus_anatinus
ENSG00000117360PRPF3100100.000ENSOCUG00000011760PRPF3100100.000Oryctolagus_cuniculus
ENSG00000117360PRPF310072.650ENSORLG00000010330prpf39971.755Oryzias_latipes
ENSG00000117360PRPF310072.650ENSORLG00020009054prpf39971.755Oryzias_latipes_hni
ENSG00000117360PRPF310072.443ENSORLG00015015016prpf39971.550Oryzias_latipes_hsok
ENSG00000117360PRPF310072.063ENSOMEG00000000940prpf39971.777Oryzias_melastigma
ENSG00000117360PRPF310093.860ENSOGAG00000005352PRPF310093.860Otolemur_garnettii
ENSG00000117360PRPF3100100.000ENSOARG00000020798PRPF3100100.000Ovis_aries
ENSG00000117360PRPF310099.854ENSPPAG00000030983PRPF310099.854Pan_paniscus
ENSG00000117360PRPF39976.261ENSPPAG00000043769-9975.816Pan_paniscus
ENSG00000117360PRPF3100100.000ENSPPRG00000000731PRPF3100100.000Panthera_pardus
ENSG00000117360PRPF3100100.000ENSPTIG00000005516PRPF3100100.000Panthera_tigris_altaica
ENSG00000117360PRPF3100100.000ENSPTRG00000001254PRPF3100100.000Pan_troglodytes
ENSG00000117360PRPF39975.371ENSPTRG00000047819-9974.926Pan_troglodytes
ENSG00000117360PRPF310099.854ENSPANG00000000499PRPF310099.854Papio_anubis
ENSG00000117360PRPF310074.322ENSPKIG00000010501prpf39974.465Paramormyrops_kingsleyae
ENSG00000117360PRPF310096.053ENSPSIG00000014877PRPF310095.906Pelodiscus_sinensis
ENSG00000117360PRPF310067.438ENSPMGG00000007776prpf39966.570Periophthalmus_magnuspinnatus
ENSG00000117360PRPF3100100.000ENSPEMG00000011672Prpf3100100.000Peromyscus_maniculatus_bairdii
ENSG00000117360PRPF36372.146ENSPMAG00000005588prpf39969.757Petromyzon_marinus
ENSG00000117360PRPF310098.389ENSPCIG00000008795PRPF310098.389Phascolarctos_cinereus
ENSG00000117360PRPF310072.380ENSPFOG00000013638prpf39971.813Poecilia_formosa
ENSG00000117360PRPF310072.779ENSPLAG00000018103prpf39972.159Poecilia_latipinna
ENSG00000117360PRPF310072.493ENSPMEG00000023546prpf39972.206Poecilia_mexicana
ENSG00000117360PRPF310072.286ENSPREG00000017216prpf39972.000Poecilia_reticulata
ENSG00000117360PRPF393100.000ENSPPYG00000000900PRPF399100.000Pongo_abelii
ENSG00000117360PRPF37587.549ENSPPYG00000018646-10087.549Pongo_abelii
ENSG00000117360PRPF38798.985ENSPCAG00000014908PRPF38798.985Procavia_capensis
ENSG00000117360PRPF310099.854ENSPCOG00000013828PRPF310099.854Propithecus_coquereli
ENSG00000117360PRPF310098.829ENSPVAG00000013472PRPF310098.829Pteropus_vampyrus
ENSG00000117360PRPF310072.727ENSPNYG00000004279prpf39972.439Pundamilia_nyererei
ENSG00000117360PRPF310073.099ENSPNAG00000001799prpf39973.239Pygocentrus_nattereri
ENSG00000117360PRPF310099.414ENSRNOG00000025629Prpf310099.414Rattus_norvegicus
ENSG00000117360PRPF38396.454ENSRBIG00000028854PRPF39896.454Rhinopithecus_bieti
ENSG00000117360PRPF3100100.000ENSRROG00000027464PRPF3100100.000Rhinopithecus_roxellana
ENSG00000117360PRPF310092.972ENSSBOG00000033104PRPF310092.972Saimiri_boliviensis_boliviensis
ENSG00000117360PRPF310098.246ENSSHAG00000009548PRPF310098.246Sarcophilus_harrisii
ENSG00000117360PRPF310073.662ENSSFOG00015022014prpf39973.239Scleropages_formosus
ENSG00000117360PRPF310071.950ENSSMAG00000015739prpf39971.669Scophthalmus_maximus
ENSG00000117360PRPF310068.867ENSSDUG00000006840prpf39968.867Seriola_dumerili
ENSG00000117360PRPF310070.769ENSSLDG00000015423prpf39971.049Seriola_lalandi_dorsalis
ENSG00000117360PRPF310099.414ENSSARG00000011064PRPF310099.414Sorex_araneus
ENSG00000117360PRPF310092.363ENSSPUG00000000809PRPF310092.363Sphenodon_punctatus
ENSG00000117360PRPF310071.067ENSSPAG00000018721prpf39971.994Stegastes_partitus
ENSG00000117360PRPF3100100.000ENSSSCG00000030119PRPF3100100.000Sus_scrofa
ENSG00000117360PRPF310080.994ENSTGUG00000004552PRPF310080.994Taeniopygia_guttata
ENSG00000117360PRPF310071.925ENSTRUG00000014923prpf39971.635Takifugu_rubripes
ENSG00000117360PRPF310072.624ENSTNIG00000008058prpf310071.449Tetraodon_nigroviridis
ENSG00000117360PRPF382100.000ENSTBEG00000014072PRPF388100.000Tupaia_belangeri
ENSG00000117360PRPF310093.704ENSTTRG00000010616PRPF310093.704Tursiops_truncatus
ENSG00000117360PRPF380100.000ENSUAMG00000009345PRPF3100100.000Ursus_americanus
ENSG00000117360PRPF3100100.000ENSUMAG00000003720PRPF3100100.000Ursus_maritimus
ENSG00000117360PRPF389100.000ENSVPAG00000005425PRPF389100.000Vicugna_pacos
ENSG00000117360PRPF3100100.000ENSVVUG00000007933PRPF3100100.000Vulpes_vulpes
ENSG00000117360PRPF310087.808ENSXETG00000018654prpf310087.808Xenopus_tropicalis
ENSG00000117360PRPF310072.493ENSXMAG00000016347prpf39971.875Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000244spliceosomal tri-snRNP complex assembly20595234.IDAProcess
GO:0000375RNA splicing, via transesterification reactions9328476.TASProcess
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome28781166.IDAProcess
GO:0000398mRNA splicing, via spliceosome9328476.NASProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22681889.HDAFunction
GO:0005515protein binding15314151.16189514.20595234.21516116.22365833.25383878.25416956.25910212.IPIFunction
GO:0005634nucleus20595234.26912367.28781166.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex9328476.NASComponent
GO:0005829cytosol-IDAComponent
GO:0006397mRNA processing9328476.TASProcess
GO:0008380RNA splicing9328476.TASProcess
GO:0015030Cajal body15257298.IDAComponent
GO:0016607nuclear speck-IDAComponent
GO:0042802identical protein binding22365833.IPIFunction
GO:0046540U4/U6 x U5 tri-snRNP complex21873635.IBAComponent
GO:0046540U4/U6 x U5 tri-snRNP complex26912367.IDAComponent
GO:0071005U2-type precatalytic spliceosome28781166.IDAComponent

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us