EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • PRI
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000119953 (Gene tree)
Gene ID
10285
Gene Symbol
SMNDC1
Alias
SPF30|SMNR|TDRD16C
Full Name
survival motor neuron domain containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
14,222 bases
Position
chr10:110,290,730-110,304,951
Accession
16900
RBP type
canonical RBP
Summary
This gene is a paralog of SMN1 gene, which encodes the survival motor neuron protein, mutations in which are cause of autosomal recessive proximal spinal muscular atrophy. The protein encoded by this gene is a nuclear protein that has been identified as a constituent of the spliceosome complex. This gene is differentially expressed, with abundant levels in skeletal muscle, and may share similar cellular function as the SMN1 gene. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000358605SMNPF06003.121e-1511
ENSP00000358616SMNPF06003.121e-1511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites
Click here to download all RNA binding sites
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000471297SMNDC1-204823--- (aa)--
ENST00000369603SMNDC1-2024341XM_005269382ENSP00000358616238 (aa)XP_005269439O75940
ENST00000477763SMNDC1-205778--- (aa)--
ENST00000460483SMNDC1-203753--- (aa)--
ENST00000369592SMNDC1-2011110-ENSP00000358605238 (aa)-O75940
Gene Model
Click here to download ENSG00000119953's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000119953Crohn Disease5E-1128067908
ENSG00000119953Crohn Disease2E-1023850713
ENSG00000119953Inflammatory Bowel Diseases3E-928067908
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000119953's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000119953SMNDC110075.210ENSAPOG00000021772smndc110075.210Acanthochromis_polyacanthus
ENSG00000119953SMNDC110099.580ENSAMEG00000005251SMNDC110099.580Ailuropoda_melanoleuca
ENSG00000119953SMNDC110077.406ENSACIG00000004819smndc110077.406Amphilophus_citrinellus
ENSG00000119953SMNDC110075.210ENSAOCG00000017869smndc110075.210Amphiprion_ocellaris
ENSG00000119953SMNDC110075.210ENSAPEG00000007752smndc110075.210Amphiprion_percula
ENSG00000119953SMNDC110076.471ENSATEG00000006830smndc110076.471Anabas_testudineus
ENSG00000119953SMNDC18395.960ENSAPLG00000004322SMNDC110095.960Anas_platyrhynchos
ENSG00000119953SMNDC110094.958ENSACAG00000005983SMNDC110094.958Anolis_carolinensis
ENSG00000119953SMNDC110099.580ENSANAG00000032875SMNDC110099.580Aotus_nancymaae
ENSG00000119953SMNDC110076.471ENSACLG00000016360smndc110076.471Astatotilapia_calliptera
ENSG00000119953SMNDC110076.471ENSAMXG00000020310smndc110076.471Astyanax_mexicanus
ENSG00000119953SMNDC110099.160ENSBTAG00000000551SMNDC110099.160Bos_taurus
ENSG00000119953SMNDC110099.580ENSCJAG00000018624SMNDC110099.580Callithrix_jacchus
ENSG00000119953SMNDC110099.580ENSCAFG00000010720SMNDC110099.580Canis_familiaris
ENSG00000119953SMNDC110099.580ENSCAFG00020011913SMNDC110099.580Canis_lupus_dingo
ENSG00000119953SMNDC110099.160ENSCHIG00000010604SMNDC110099.160Capra_hircus
ENSG00000119953SMNDC110099.160ENSTSYG00000026454SMNDC110099.160Carlito_syrichta
ENSG00000119953SMNDC110083.750ENSCAPG00000009132SMNDC110098.507Cavia_aperea
ENSG00000119953SMNDC110098.739ENSCPOG00000031666SMNDC110098.739Cavia_porcellus
ENSG00000119953SMNDC110099.580ENSCCAG00000021793SMNDC110099.580Cebus_capucinus
ENSG00000119953SMNDC110099.160ENSCATG00000035910SMNDC110099.160Cercocebus_atys
ENSG00000119953SMNDC110098.319ENSCLAG00000002838SMNDC110098.319Chinchilla_lanigera
ENSG00000119953SMNDC110099.580ENSCSAG00000005169SMNDC110099.580Chlorocebus_sabaeus
ENSG00000119953SMNDC18198.964ENSCHOG00000002936SMNDC110098.964Choloepus_hoffmanni
ENSG00000119953SMNDC110097.479ENSCPBG00000012837SMNDC110097.479Chrysemys_picta_bellii
ENSG00000119953SMNDC110078.571ENSCANG00000036994-10078.571Colobus_angolensis_palliatus
ENSG00000119953SMNDC110092.017ENSCANG00000034620-10092.017Colobus_angolensis_palliatus
ENSG00000119953SMNDC110099.580ENSCANG00000031720-10099.580Colobus_angolensis_palliatus
ENSG00000119953SMNDC110098.739ENSCGRG00001012973Smndc110098.739Cricetulus_griseus_chok1gshd
ENSG00000119953SMNDC110098.739ENSCGRG00000012396Smndc110098.739Cricetulus_griseus_crigri
ENSG00000119953SMNDC110076.050ENSCSEG00000015621smndc110076.050Cynoglossus_semilaevis
ENSG00000119953SMNDC110076.891ENSCVAG00000020432smndc110076.891Cyprinodon_variegatus
ENSG00000119953SMNDC110078.992ENSDARG00000056235smndc110078.992Danio_rerio
ENSG00000119953SMNDC110099.580ENSDNOG00000016387SMNDC18399.580Dasypus_novemcinctus
ENSG00000119953SMNDC110099.580ENSDORG00000023715Smndc110099.580Dipodomys_ordii
ENSG00000119953SMNDC19541.767FBgn0039977CG174549842.972Drosophila_melanogaster
ENSG00000119953SMNDC110070.954ENSEBUG00000010929smndc110070.954Eptatretus_burgeri
ENSG00000119953SMNDC110099.580ENSEASG00005014930SMNDC110099.580Equus_asinus_asinus
ENSG00000119953SMNDC110099.580ENSECAG00000029973SMNDC110099.580Equus_caballus
ENSG00000119953SMNDC18369.697ENSEEUG00000013407-10069.697Erinaceus_europaeus
ENSG00000119953SMNDC110078.151ENSELUG00000000227smndc110078.151Esox_lucius
ENSG00000119953SMNDC110099.580ENSFCAG00000027353SMNDC110099.580Felis_catus
ENSG00000119953SMNDC110095.798ENSFALG00000002306SMNDC110095.798Ficedula_albicollis
ENSG00000119953SMNDC110099.160ENSFDAG00000006468SMNDC110099.160Fukomys_damarensis
ENSG00000119953SMNDC110076.471ENSFHEG00000020150smndc110076.471Fundulus_heteroclitus
ENSG00000119953SMNDC110076.891ENSGMOG00000016585smndc110076.891Gadus_morhua
ENSG00000119953SMNDC110095.798ENSGALG00000008561SMNDC110095.798Gallus_gallus
ENSG00000119953SMNDC110075.210ENSGAFG00000011582smndc110075.210Gambusia_affinis
ENSG00000119953SMNDC110076.050ENSGACG00000009468smndc110076.050Gasterosteus_aculeatus
ENSG00000119953SMNDC110097.479ENSGAGG00000024547SMNDC110097.479Gopherus_agassizii
ENSG00000119953SMNDC110099.580ENSGGOG00000010071SMNDC110099.580Gorilla_gorilla
ENSG00000119953SMNDC110076.471ENSHBUG00000017596smndc110076.471Haplochromis_burtoni
ENSG00000119953SMNDC110068.443ENSHGLG00000001157-10065.306Heterocephalus_glaber_female
ENSG00000119953SMNDC110099.160ENSHGLG00000013390-10099.160Heterocephalus_glaber_female
ENSG00000119953SMNDC110076.639ENSHGLG00100004278-10076.230Heterocephalus_glaber_male
ENSG00000119953SMNDC110099.160ENSHGLG00100004814-10099.160Heterocephalus_glaber_male
ENSG00000119953SMNDC110075.314ENSHCOG00000000783smndc110075.314Hippocampus_comes
ENSG00000119953SMNDC110077.731ENSIPUG00000004217smndc110077.731Ictalurus_punctatus
ENSG00000119953SMNDC110099.160ENSSTOG00000006088SMNDC110099.160Ictidomys_tridecemlineatus
ENSG00000119953SMNDC110098.739ENSJJAG00000019974Smndc110098.739Jaculus_jaculus
ENSG00000119953SMNDC110075.210ENSKMAG00000020134smndc110075.210Kryptolebias_marmoratus
ENSG00000119953SMNDC110074.790ENSLBEG00000004598smndc110074.790Labrus_bergylta
ENSG00000119953SMNDC110084.454ENSLACG00000007784SMNDC110084.454Latimeria_chalumnae
ENSG00000119953SMNDC110084.454ENSLOCG00000012355smndc110084.454Lepisosteus_oculatus
ENSG00000119953SMNDC110099.160ENSLAFG00000014353SMNDC110099.160Loxodonta_africana
ENSG00000119953SMNDC110099.580ENSMFAG00000002433-10099.580Macaca_fascicularis
ENSG00000119953SMNDC110081.513ENSMFAG00000038381-10081.513Macaca_fascicularis
ENSG00000119953SMNDC110081.513ENSMMUG00000045875-10081.513Macaca_mulatta
ENSG00000119953SMNDC110099.580ENSMMUG00000007775SMNDC110099.580Macaca_mulatta
ENSG00000119953SMNDC110099.580ENSMNEG00000042963-10099.580Macaca_nemestrina
ENSG00000119953SMNDC110088.235ENSMNEG00000033853-10088.235Macaca_nemestrina
ENSG00000119953SMNDC110093.305ENSMLEG00000040236SMNDC110092.887Mandrillus_leucophaeus
ENSG00000119953SMNDC18973.709ENSMAMG00000018233smndc18773.709Mastacembelus_armatus
ENSG00000119953SMNDC110076.471ENSMZEG00005027510smndc110076.471Maylandia_zebra
ENSG00000119953SMNDC18495.500ENSMGAG00000010777SMNDC18495.500Meleagris_gallopavo
ENSG00000119953SMNDC110099.580ENSMAUG00000012243-10099.580Mesocricetus_auratus
ENSG00000119953SMNDC19980.169ENSMAUG00000005459-9380.169Mesocricetus_auratus
ENSG00000119953SMNDC110085.714ENSMICG00000031640-10085.714Microcebus_murinus
ENSG00000119953SMNDC110098.739ENSMICG00000027336-10098.739Microcebus_murinus
ENSG00000119953SMNDC110099.160ENSMOCG00000002458Smndc110099.160Microtus_ochrogaster
ENSG00000119953SMNDC110076.471ENSMMOG00000008856smndc110076.471Mola_mola
ENSG00000119953SMNDC110099.580ENSMODG00000010542SMNDC110099.580Monodelphis_domestica
ENSG00000119953SMNDC110076.471ENSMALG00000017598smndc110076.471Monopterus_albus
ENSG00000119953SMNDC110099.160MGP_CAROLIEiJ_G0023072Smndc110099.160Mus_caroli
ENSG00000119953SMNDC110099.580ENSMUSG00000025024Smndc110099.580Mus_musculus
ENSG00000119953SMNDC110099.160MGP_PahariEiJ_G0014560Smndc110099.160Mus_pahari
ENSG00000119953SMNDC110099.580MGP_SPRETEiJ_G0023993Smndc110099.580Mus_spretus
ENSG00000119953SMNDC110099.580ENSMPUG00000002089SMNDC110099.580Mustela_putorius_furo
ENSG00000119953SMNDC110098.319ENSMLUG00000016007SMNDC110098.319Myotis_lucifugus
ENSG00000119953SMNDC110098.739ENSNGAG00000006833Smndc110098.739Nannospalax_galili
ENSG00000119953SMNDC110076.050ENSNBRG00000017089smndc110076.050Neolamprologus_brichardi
ENSG00000119953SMNDC110099.580ENSNLEG00000015471SMNDC110099.580Nomascus_leucogenys
ENSG00000119953SMNDC18258.500ENSMEUG00000010120-9959.000Notamacropus_eugenii
ENSG00000119953SMNDC110098.739ENSOPRG00000015348SMNDC110098.739Ochotona_princeps
ENSG00000119953SMNDC110069.748ENSODEG00000007594-10066.807Octodon_degus
ENSG00000119953SMNDC110076.050ENSONIG00000000434smndc110076.050Oreochromis_niloticus
ENSG00000119953SMNDC110098.319ENSOANG00000001598SMNDC110098.319Ornithorhynchus_anatinus
ENSG00000119953SMNDC110075.210ENSOCUG00000012274-10076.891Oryctolagus_cuniculus
ENSG00000119953SMNDC110098.739ENSOCUG00000008145-10098.739Oryctolagus_cuniculus
ENSG00000119953SMNDC110076.050ENSORLG00000005934smndc19576.050Oryzias_latipes
ENSG00000119953SMNDC110076.050ENSORLG00020008796smndc19576.050Oryzias_latipes_hni
ENSG00000119953SMNDC110076.050ENSORLG00015013666smndc110076.050Oryzias_latipes_hsok
ENSG00000119953SMNDC110077.731ENSOMEG00000007590smndc110077.731Oryzias_melastigma
ENSG00000119953SMNDC110099.160ENSOGAG00000000571SMNDC110099.160Otolemur_garnettii
ENSG00000119953SMNDC110099.160ENSOARG00000009500SMNDC110099.160Ovis_aries
ENSG00000119953SMNDC110099.580ENSPPAG00000027815SMNDC110099.580Pan_paniscus
ENSG00000119953SMNDC110099.580ENSPPRG00000013749SMNDC110099.580Panthera_pardus
ENSG00000119953SMNDC110099.580ENSPTIG00000011451SMNDC110099.580Panthera_tigris_altaica
ENSG00000119953SMNDC110099.580ENSPTRG00000002937SMNDC110099.580Pan_troglodytes
ENSG00000119953SMNDC110093.697ENSPANG00000031346-10093.697Papio_anubis
ENSG00000119953SMNDC110099.580ENSPANG00000020805-10099.580Papio_anubis
ENSG00000119953SMNDC110081.092ENSPKIG00000017164smndc110081.092Paramormyrops_kingsleyae
ENSG00000119953SMNDC110097.899ENSPSIG00000012257SMNDC110097.899Pelodiscus_sinensis
ENSG00000119953SMNDC110073.950ENSPMGG00000015651smndc110073.950Periophthalmus_magnuspinnatus
ENSG00000119953SMNDC110099.580ENSPEMG00000022058Smndc110099.580Peromyscus_maniculatus_bairdii
ENSG00000119953SMNDC110067.623ENSPMAG00000007705smndc110068.033Petromyzon_marinus
ENSG00000119953SMNDC19762.609ENSPCIG00000009693-10062.609Phascolarctos_cinereus
ENSG00000119953SMNDC110099.580ENSPCIG00000018419SMNDC110099.580Phascolarctos_cinereus
ENSG00000119953SMNDC110075.630ENSPFOG00000017113smndc110075.630Poecilia_formosa
ENSG00000119953SMNDC110076.050ENSPLAG00000010372smndc110076.050Poecilia_latipinna
ENSG00000119953SMNDC110076.050ENSPMEG00000012288smndc110076.050Poecilia_mexicana
ENSG00000119953SMNDC110075.210ENSPREG00000012279smndc110075.210Poecilia_reticulata
ENSG00000119953SMNDC110099.580ENSPPYG00000002643SMNDC110099.580Pongo_abelii
ENSG00000119953SMNDC18198.964ENSPCAG00000016183SMNDC110098.964Procavia_capensis
ENSG00000119953SMNDC110099.160ENSPCOG00000024343SMNDC110099.160Propithecus_coquereli
ENSG00000119953SMNDC110076.471ENSPVAG00000004368SMNDC110076.471Pteropus_vampyrus
ENSG00000119953SMNDC19270.222ENSPNYG00000024093smndc19870.222Pundamilia_nyererei
ENSG00000119953SMNDC110076.891ENSPNAG00000025285smndc110076.891Pygocentrus_nattereri
ENSG00000119953SMNDC110099.160ENSRNOG00000014833Smndc110099.160Rattus_norvegicus
ENSG00000119953SMNDC110083.193ENSRBIG00000032452-10083.193Rhinopithecus_bieti
ENSG00000119953SMNDC110099.160ENSRBIG00000000224-10099.160Rhinopithecus_bieti
ENSG00000119953SMNDC110083.613ENSRROG00000039125-10083.613Rhinopithecus_roxellana
ENSG00000119953SMNDC110099.580ENSRROG00000044992-10099.580Rhinopithecus_roxellana
ENSG00000119953SMNDC110099.580ENSSBOG00000026789SMNDC110099.580Saimiri_boliviensis_boliviensis
ENSG00000119953SMNDC110099.580ENSSHAG00000015189SMNDC110099.580Sarcophilus_harrisii
ENSG00000119953SMNDC110080.252ENSSFOG00015008311smndc110080.252Scleropages_formosus
ENSG00000119953SMNDC110076.050ENSSMAG00000020118smndc110076.050Scophthalmus_maximus
ENSG00000119953SMNDC110076.891ENSSDUG00000015330smndc110076.891Seriola_dumerili
ENSG00000119953SMNDC110076.891ENSSLDG00000017325smndc110076.891Seriola_lalandi_dorsalis
ENSG00000119953SMNDC110098.319ENSSARG00000006063SMNDC110098.319Sorex_araneus
ENSG00000119953SMNDC110096.218ENSSPUG00000004574SMNDC110096.218Sphenodon_punctatus
ENSG00000119953SMNDC110074.790ENSSPAG00000000338smndc110074.790Stegastes_partitus
ENSG00000119953SMNDC110099.160ENSSSCG00000030507SMNDC110099.160Sus_scrofa
ENSG00000119953SMNDC110095.798ENSTGUG00000010599SMNDC110095.798Taeniopygia_guttata
ENSG00000119953SMNDC110074.370ENSTRUG00000023281smndc110074.370Takifugu_rubripes
ENSG00000119953SMNDC110075.210ENSTNIG00000013331smndc110075.210Tetraodon_nigroviridis
ENSG00000119953SMNDC110099.160ENSTBEG00000014337SMNDC110099.160Tupaia_belangeri
ENSG00000119953SMNDC110099.580ENSUAMG00000008142SMNDC110099.580Ursus_americanus
ENSG00000119953SMNDC110099.580ENSUMAG00000023722SMNDC110099.580Ursus_maritimus
ENSG00000119953SMNDC18398.990ENSVPAG00000003402SMNDC110098.990Vicugna_pacos
ENSG00000119953SMNDC110099.580ENSVVUG00000007820SMNDC110099.580Vulpes_vulpes
ENSG00000119953SMNDC16082.394ENSXETG00000015415SMNDC110082.394Xenopus_tropicalis
ENSG00000119953SMNDC110075.210ENSXCOG00000009159smndc110075.210Xiphophorus_couchianus
ENSG00000119953SMNDC110074.790ENSXMAG00000012755smndc110074.790Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000375RNA splicing, via transesterification reactions9731529.TASProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22658674.HDAFunction
GO:0005515protein binding15494309.22365833.IPIFunction
GO:0005634nucleus9817934.TASComponent
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005737cytoplasm-IEAComponent
GO:0006915apoptotic process-IEAProcess
GO:0015030Cajal body-IEAComponent
GO:0016607nuclear speck-IEAComponent

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