EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000121274 (Gene tree)
Gene ID
64282
Gene Symbol
TENT4B
Alias
TRF4-2|TUT3|PAPD5
Full Name
terminal nucleotidyltransferase 4B
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
82,393 bases
Position
chr16:50,152,918-50,235,310
Accession
30758
RBP type
canonical RBP
Summary
(Terminal Nucleotidyltransferase 4B) is a Protein Coding gene. Among its related pathways are Deadenylation-dependent mRNA decay. An important paralog of this gene is TENT4A.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000455837PAP_assocPF03828.193.8e-1411
ENSP00000396995PAP_assocPF03828.194.8e-1411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
21788334PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif.RNA2011 SepRammelt Cdoi: 10.1261/rna.2787011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000436909TENT4B-2024635XM_005256092ENSP00000396995698 (aa)XP_005256150Q8NDF8
ENST00000562717TENT4B-2041866--- (aa)--
ENST00000357464TENT4B-2017233-ENSP00000350054303 (aa)-E9PC61
ENST00000561678TENT4B-2032916-ENSP00000455837588 (aa)-H3BQM0
Gene Model
Click here to download ENSG00000121274's gene model file
Pathways
Pathway IDPathway NameSource
hsa03018RNA degradationKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000121274Body Weight1.80666280294604E-817903300
ENSG00000121274Body Weight6.39811974874192E-1117903300
ENSG00000121274Body Weight3.09972419109118E-717903300
ENSG00000121274Body Weight1.60845764346954E-617903300
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000121274rs38142841650215169?Adolescent idiopathic scoliosis30019117EFO_0005423
ENSG00000121274rs762191711650155018?Lung function (FVC)30595370EFO_0004312
ENSG00000121274rs762191711650155018ALung function (FVC)30804560[0.025-0.045] unit decrease0.0351EFO_0004312
ENSG00000121274rs762191711650155018AFEV130804560[0.019-0.038] unit decrease0.0283EFO_0004314
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000121274's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000121274TENT4B9473.944ENSG00000112941TENT4A10070.370
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000121274TENT4B9783.618ENSAPOG00000022376tent4b8666.900Acanthochromis_polyacanthus
ENSG00000121274TENT4B9597.917ENSAMEG00000006535TENT4B10093.501Ailuropoda_melanoleuca
ENSG00000121274TENT4B8884.701ENSACIG00000004518tent4b8061.796Amphilophus_citrinellus
ENSG00000121274TENT4B9783.618ENSAOCG00000018117tent4b8065.909Amphiprion_ocellaris
ENSG00000121274TENT4B9783.618ENSAPEG00000010518tent4b8066.200Amphiprion_percula
ENSG00000121274TENT4B9783.276ENSATEG00000003179tent4b8762.279Anabas_testudineus
ENSG00000121274TENT4B9593.056ENSAPLG00000014941TENT4B10088.822Anas_platyrhynchos
ENSG00000121274TENT4B9394.326ENSACAG00000013952TENT4B8679.268Anolis_carolinensis
ENSG00000121274TENT4B10098.810ENSANAG00000029197TENT4B10098.810Aotus_nancymaae
ENSG00000121274TENT4B8987.823ENSACLG00000017633tent4b8063.093Astatotilapia_calliptera
ENSG00000121274TENT4B9585.862ENSAMXG00000018932tent4b8762.419Astyanax_mexicanus
ENSG00000121274TENT4B9597.917ENSBTAG00000007942TENT4B8996.441Bos_taurus
ENSG00000121274TENT4B10098.469ENSCJAG00000001932TENT4B10098.469Callithrix_jacchus
ENSG00000121274TENT4B10093.813ENSCAFG00000009938TENT4B10093.980Canis_familiaris
ENSG00000121274TENT4B9993.750ENSCAFG00020000987TENT4B9394.201Canis_lupus_dingo
ENSG00000121274TENT4B9498.601ENSCHIG00000021933TENT4B10094.173Capra_hircus
ENSG00000121274TENT4B5698.165ENSTSYG00000009001-10098.792Carlito_syrichta
ENSG00000121274TENT4B10095.085ENSCPOG00000011799TENT4B9495.419Cavia_porcellus
ENSG00000121274TENT4B10096.705ENSCCAG00000035345TENT4B10096.705Cebus_capucinus
ENSG00000121274TENT4B10097.970ENSCATG00000031641TENT4B10098.107Cercocebus_atys
ENSG00000121274TENT4B9597.917ENSCLAG00000004921TENT4B10097.237Chinchilla_lanigera
ENSG00000121274TENT4B10086.299ENSCSAG00000005390TENT4B10093.071Chlorocebus_sabaeus
ENSG00000121274TENT4B65100.000ENSCHOG00000002006-76100.000Choloepus_hoffmanni
ENSG00000121274TENT4B9591.319ENSCPBG00000015960TENT4B9177.955Chrysemys_picta_bellii
ENSG00000121274TENT4B9598.264ENSCANG00000041185TENT4B100100.000Colobus_angolensis_palliatus
ENSG00000121274TENT4B10093.898ENSCGRG00001023597Tent4b10094.313Cricetulus_griseus_chok1gshd
ENSG00000121274TENT4B8989.259ENSCSEG00000011367tent4b8861.950Cynoglossus_semilaevis
ENSG00000121274TENT4B9780.546ENSCVAG00000020733tent4b8164.769Cyprinodon_variegatus
ENSG00000121274TENT4B9783.108ENSDARG00000060071tent4b8162.567Danio_rerio
ENSG00000121274TENT4B9597.917ENSDNOG00000001039TENT4B10098.364Dasypus_novemcinctus
ENSG00000121274TENT4B9597.917ENSDORG00000000031Tent4b9299.000Dipodomys_ordii
ENSG00000121274TENT4B7071.875ENSETEG00000012522-7471.875Echinops_telfairi
ENSG00000121274TENT4B9074.359ENSEBUG00000011220tent4b5969.188Eptatretus_burgeri
ENSG00000121274TENT4B9597.917ENSEASG00005014551TENT4B9994.023Equus_asinus_asinus
ENSG00000121274TENT4B9597.917ENSECAG00000040529TENT4B6994.271Equus_caballus
ENSG00000121274TENT4B7297.840ENSEEUG00000005687-8497.840Erinaceus_europaeus
ENSG00000121274TENT4B9580.208ENSELUG00000006619tent4b8761.039Esox_lucius
ENSG00000121274TENT4B8983.516ENSELUG00000017815TENT4B5974.878Esox_lucius
ENSG00000121274TENT4B10097.288ENSFCAG00000018796TENT4B10097.288Felis_catus
ENSG00000121274TENT4B9394.306ENSFALG00000000087TENT4B10088.294Ficedula_albicollis
ENSG00000121274TENT4B9597.569ENSFDAG00000013258TENT4B10098.635Fukomys_damarensis
ENSG00000121274TENT4B9779.522ENSFHEG00000012383tent4b8062.989Fundulus_heteroclitus
ENSG00000121274TENT4B9084.672ENSGMOG00000006223tent4b9861.728Gadus_morhua
ENSG00000121274TENT4B9593.056ENSGALG00000031851TENT4B9079.589Gallus_gallus
ENSG00000121274TENT4B9780.887ENSGAFG00000009790tent4b8064.121Gambusia_affinis
ENSG00000121274TENT4B9086.131ENSGACG00000016727tent4b9863.589Gasterosteus_aculeatus
ENSG00000121274TENT4B9591.319ENSGAGG00000003561TENT4B9177.955Gopherus_agassizii
ENSG00000121274TENT4B10099.660ENSGGOG00000006316PAPD510099.660Gorilla_gorilla
ENSG00000121274TENT4B8987.823ENSHBUG00000021610tent4b8063.093Haplochromis_burtoni
ENSG00000121274TENT4B10094.237ENSHGLG00000004206TENT4B9394.629Heterocephalus_glaber_female
ENSG00000121274TENT4B9597.917ENSHGLG00100014639TENT4B9995.159Heterocephalus_glaber_male
ENSG00000121274TENT4B9781.911ENSHCOG00000001028tent4b8861.244Hippocampus_comes
ENSG00000121274TENT4B9780.592ENSIPUG00000015994tent4b8462.620Ictalurus_punctatus
ENSG00000121274TENT4B10093.412ENSJJAG00000015670Tent4b10095.433Jaculus_jaculus
ENSG00000121274TENT4B9783.276ENSKMAG00000001070tent4b8166.078Kryptolebias_marmoratus
ENSG00000121274TENT4B8988.561ENSLBEG00000023462tent4b8064.737Labrus_bergylta
ENSG00000121274TENT4B9590.625ENSLACG00000009825TENT4B9172.283Latimeria_chalumnae
ENSG00000121274TENT4B9587.108ENSLOCG00000007410tent4b8965.756Lepisosteus_oculatus
ENSG00000121274TENT4B9597.917ENSLAFG00000006069-10099.200Loxodonta_africana
ENSG00000121274TENT4B10097.800ENSMFAG00000002315TENT4B10099.683Macaca_fascicularis
ENSG00000121274TENT4B10099.660ENSMMUG00000003116TENT4B10099.698Macaca_mulatta
ENSG00000121274TENT4B10098.006ENSMNEG00000036382TENT4B10099.842Macaca_nemestrina
ENSG00000121274TENT4B9598.264ENSMLEG00000034283TENT4B10099.825Mandrillus_leucophaeus
ENSG00000121274TENT4B9584.429ENSMAMG00000004618tent4b8064.488Mastacembelus_armatus
ENSG00000121274TENT4B8987.823ENSMZEG00005006186tent4b8063.093Maylandia_zebra
ENSG00000121274TENT4B9593.056ENSMGAG00000004957TENT4B10088.623Meleagris_gallopavo
ENSG00000121274TENT4B10093.729ENSMAUG00000018042Tent4b9294.155Mesocricetus_auratus
ENSG00000121274TENT4B10096.774ENSMICG00000027866TENT4B10096.774Microcebus_murinus
ENSG00000121274TENT4B10094.068ENSMOCG00000013042Tent4b9294.471Microtus_ochrogaster
ENSG00000121274TENT4B8988.192ENSMMOG00000016359tent4b8760.577Mola_mola
ENSG00000121274TENT4B9597.222ENSMODG00000013026TENT4B9787.075Monodelphis_domestica
ENSG00000121274TENT4B9782.594ENSMALG00000013905tent4b8065.591Monopterus_albus
ENSG00000121274TENT4B9597.917MGP_CAROLIEiJ_G0031355Tent4b9093.681Mus_caroli
ENSG00000121274TENT4B10093.220ENSMUSG00000036779Tent4b9393.681Mus_musculus
ENSG00000121274TENT4B10093.390MGP_PahariEiJ_G0022954Tent4b9493.839Mus_pahari
ENSG00000121274TENT4B9597.917MGP_SPRETEiJ_G0032473Tent4b9093.523Mus_spretus
ENSG00000121274TENT4B9597.917ENSMPUG00000003121TENT4B9198.929Mustela_putorius_furo
ENSG00000121274TENT4B9794.218ENSMLUG00000013865TENT4B9888.235Myotis_lucifugus
ENSG00000121274TENT4B8986.447ENSNBRG00000008931tent4b8061.972Neolamprologus_brichardi
ENSG00000121274TENT4B100100.000ENSNLEG00000000797TENT4B100100.000Nomascus_leucogenys
ENSG00000121274TENT4B9597.917ENSOPRG00000013849TENT4B10095.600Ochotona_princeps
ENSG00000121274TENT4B9597.917ENSODEG00000002528TENT4B9598.036Octodon_degus
ENSG00000121274TENT4B8987.823ENSONIG00000002860tent4b9264.148Oreochromis_niloticus
ENSG00000121274TENT4B9790.476ENSOANG00000000589TENT4B10090.591Ornithorhynchus_anatinus
ENSG00000121274TENT4B9597.917ENSOCUG00000014750TENT4B9895.717Oryctolagus_cuniculus
ENSG00000121274TENT4B8986.347ENSORLG00000013989tent4b8064.460Oryzias_latipes
ENSG00000121274TENT4B8985.978ENSORLG00020020171tent4b8064.111Oryzias_latipes_hni
ENSG00000121274TENT4B8986.716ENSORLG00015018544tent4b8064.223Oryzias_latipes_hsok
ENSG00000121274TENT4B8987.454ENSOMEG00000016359tent4b8064.623Oryzias_melastigma
ENSG00000121274TENT4B9597.251ENSOGAG00000011282TENT4B10096.579Otolemur_garnettii
ENSG00000121274TENT4B9597.917ENSOARG00000017186TENT4B10098.200Ovis_aries
ENSG00000121274TENT4B94100.000ENSPPAG00000033650TENT4B100100.000Pan_paniscus
ENSG00000121274TENT4B10097.288ENSPPRG00000024986TENT4B10097.288Panthera_pardus
ENSG00000121274TENT4B5698.777ENSPTIG00000020374-10099.396Panthera_tigris_altaica
ENSG00000121274TENT4B100100.000ENSPTRG00000008101TENT4B100100.000Pan_troglodytes
ENSG00000121274TENT4B91100.000ENSPANG00000006934TENT4B91100.000Papio_anubis
ENSG00000121274TENT4B9677.397ENSPKIG00000005085tent4b9070.139Paramormyrops_kingsleyae
ENSG00000121274TENT4B9584.028ENSPKIG00000000206TENT4B8067.972Paramormyrops_kingsleyae
ENSG00000121274TENT4B9591.319ENSPSIG00000010667TENT4B10087.103Pelodiscus_sinensis
ENSG00000121274TENT4B9484.321ENSPMGG00000007216tent4b7170.868Periophthalmus_magnuspinnatus
ENSG00000121274TENT4B9597.222ENSPCIG00000018132TENT4B9282.808Phascolarctos_cinereus
ENSG00000121274TENT4B9780.887ENSPFOG00000015267tent4b8064.654Poecilia_formosa
ENSG00000121274TENT4B9780.546ENSPLAG00000011816tent4b8064.298Poecilia_latipinna
ENSG00000121274TENT4B9780.887ENSPMEG00000012621tent4b8064.654Poecilia_mexicana
ENSG00000121274TENT4B9780.887ENSPREG00000007243tent4b8064.476Poecilia_reticulata
ENSG00000121274TENT4B9598.264ENSPPYG00000007337-10098.622Pongo_abelii
ENSG00000121274TENT4B65100.000ENSPCAG00000003515TENT4B85100.000Procavia_capensis
ENSG00000121274TENT4B9098.175ENSPCOG00000015505TENT4B10084.864Propithecus_coquereli
ENSG00000121274TENT4B9591.319ENSPVAG00000004167TENT4B7891.403Pteropus_vampyrus
ENSG00000121274TENT4B8987.823ENSPNYG00000010512tent4b8163.972Pundamilia_nyererei
ENSG00000121274TENT4B9585.517ENSPNAG00000023275tent4b8763.942Pygocentrus_nattereri
ENSG00000121274TENT4B9497.902ENSRNOG00000024212Tent4b10089.686Rattus_norvegicus
ENSG00000121274TENT4B10099.660ENSRBIG00000042876TENT4B10099.683Rhinopithecus_bieti
ENSG00000121274TENT4B10099.660ENSRROG00000042164TENT4B10099.683Rhinopithecus_roxellana
ENSG00000121274TENT4B10098.639ENSSBOG00000020525TENT4B10098.732Saimiri_boliviensis_boliviensis
ENSG00000121274TENT4B9597.222ENSSHAG00000018746TENT4B9987.500Sarcophilus_harrisii
ENSG00000121274TENT4B9572.569ENSSFOG00015001704tent4b7574.519Scleropages_formosus
ENSG00000121274TENT4B9586.806ENSSFOG00015019677TENT4B9268.310Scleropages_formosus
ENSG00000121274TENT4B8990.037ENSSMAG00000009474tent4b8762.599Scophthalmus_maximus
ENSG00000121274TENT4B9783.618ENSSDUG00000006848tent4b8066.200Seriola_dumerili
ENSG00000121274TENT4B9783.618ENSSLDG00000017282tent4b8066.200Seriola_lalandi_dorsalis
ENSG00000121274TENT4B72100.000ENSSARG00000002791-84100.000Sorex_araneus
ENSG00000121274TENT4B9590.625ENSSPUG00000010353TENT4B8781.915Sphenodon_punctatus
ENSG00000121274TENT4B9783.276ENSSPAG00000020283tent4b8165.391Stegastes_partitus
ENSG00000121274TENT4B9597.917ENSSSCG00000040887TENT4B8996.682Sus_scrofa
ENSG00000121274TENT4B9592.708ENSTGUG00000008561TENT4B10089.022Taeniopygia_guttata
ENSG00000121274TENT4B9980.719ENSTRUG00000006962tent4b8762.679Takifugu_rubripes
ENSG00000121274TENT4B9382.918ENSTNIG00000004479tent4b8977.225Tetraodon_nigroviridis
ENSG00000121274TENT4B9597.569ENSTBEG00000012515TENT4B9990.794Tupaia_belangeri
ENSG00000121274TENT4B9597.222ENSTTRG00000013375TENT4B10098.113Tursiops_truncatus
ENSG00000121274TENT4B9997.089ENSUAMG00000024757TENT4B9794.659Ursus_americanus
ENSG00000121274TENT4B9597.917ENSUMAG00000006309TENT4B9199.400Ursus_maritimus
ENSG00000121274TENT4B9582.986ENSVPAG00000002204TENT4B10089.400Vicugna_pacos
ENSG00000121274TENT4B9597.222ENSVVUG00000018169TENT4B10098.899Vulpes_vulpes
ENSG00000121274TENT4B9580.969ENSXETG00000000446tent4b9670.304Xenopus_tropicalis
ENSG00000121274TENT4B9977.524ENSXCOG00000012709tent4b8063.943Xiphophorus_couchianus
ENSG00000121274TENT4B9781.229ENSXMAG00000023205tent4b8064.476Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003887DNA-directed DNA polymerase activity-IEAFunction
GO:0004652polynucleotide adenylyltransferase activity21873635.IBAFunction
GO:0004652polynucleotide adenylyltransferase activity28383716.IDAFunction
GO:0005515protein binding28383716.IPIFunction
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus21855801.IDAComponent
GO:0005737cytoplasm28383716.IDAComponent
GO:0006364rRNA processing-IEAProcess
GO:0006378mRNA polyadenylation28383716.IDAProcess
GO:0007049cell cycle-IEAProcess
GO:0010587miRNA catabolic process25049417.IDAProcess
GO:0031499TRAMP complex21873635.IBAComponent
GO:0031499TRAMP complex21855801.IDAComponent
GO:0032211negative regulation of telomere maintenance via telomerase26950371.IMPProcess
GO:0033500carbohydrate homeostasis28383716.IMPProcess
GO:0043629ncRNA polyadenylation25049417.IDAProcess
GO:0043630ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process26950371.IMPProcess
GO:0046872metal ion binding-IEAFunction
GO:0051301cell division-IEAProcess
GO:0060212negative regulation of nuclear-transcribed mRNA poly(A) tail shortening30026317.IMPProcess
GO:0070034telomerase RNA binding26950371.ICFunction
GO:0070568guanylyltransferase activity30026317.IMPFunction
GO:0071044histone mRNA catabolic process21873635.IBAProcess
GO:0071044histone mRNA catabolic process18172165.IMPProcess
GO:0071050snoRNA polyadenylation21873635.IBAProcess
GO:0071050snoRNA polyadenylation22442037.IDAProcess
GO:0071076RNA 3' uridylation30026317.IMPProcess
GO:0071897DNA biosynthetic process-IEAProcess
GO:1905870positive regulation of 3'-UTR-mediated mRNA stabilization30026317.IMPProcess

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