EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000121486 (Gene tree)
Gene ID
81627
Gene Symbol
TRMT1L
Alias
C1orf25
Full Name
tRNA methyltransferase 1 like
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
39,014 bases
Position
chr1:185,118,085-185,157,098
Accession
16782
RBP type
canonical RBP
Summary
This gene encodes a protein that has some similarity to N2,N2-dimethylguanosine tRNA methyltransferase from other organisms. Studies of the mouse ortholog have shown that this protein plays a role in motor coordination and exploratory behavior, and it may also be involved in modulating postnatal neuronal functions. Alternatively spliced transcripts have been identified for this gene. [provided by RefSeq, Jan 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000356476TRMPF02005.161.3e-6512
ENSP00000356476TRMPF02005.161.3e-6522
ENSP00000414339TRMPF02005.161.9e-2811
ENSP00000356476Met_10PF02475.160.0005811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000487028TRMT1L-204619--- (aa)--
ENST00000458395TRMT1L-202735-ENSP00000414339212 (aa)-X6RK96
ENST00000367506TRMT1L-2014392XM_017002419ENSP00000356476733 (aa)XP_016857908Q7Z2T5
ENST00000465827TRMT1L-203706--- (aa)--
Gene Model
Click here to download ENSG00000121486's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000121486rs64249711185141235THand grip strength29691431[0.0014-0.0026] unit increase0.002EFO_0006941
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000121486's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000121486TRMT1L9970.616ENSAPOG00000011807trmt1l9957.837Acanthochromis_polyacanthus
ENSG00000121486TRMT1L9998.571ENSAMEG00000013538TRMT1L10094.150Ailuropoda_melanoleuca
ENSG00000121486TRMT1L9971.564ENSACIG00000012049trmt1l9662.651Amphilophus_citrinellus
ENSG00000121486TRMT1L10069.811ENSAOCG00000018112trmt1l9961.538Amphiprion_ocellaris
ENSG00000121486TRMT1L10070.283ENSAPEG00000021433trmt1l9960.836Amphiprion_percula
ENSG00000121486TRMT1L9275.258ENSATEG00000004573trmt1l9963.889Anabas_testudineus
ENSG00000121486TRMT1L9980.476ENSAPLG00000008394TRMT1L9970.940Anas_platyrhynchos
ENSG00000121486TRMT1L9980.952ENSACAG00000002342TRMT1L8773.709Anolis_carolinensis
ENSG00000121486TRMT1L9998.571ENSANAG00000038162TRMT1L10097.271Aotus_nancymaae
ENSG00000121486TRMT1L9970.952ENSACLG00000021625trmt1l9361.137Astatotilapia_calliptera
ENSG00000121486TRMT1L9972.857ENSAMXG00000009602trmt1l9162.117Astyanax_mexicanus
ENSG00000121486TRMT1L9997.129ENSBTAG00000011285TRMT1L10090.958Bos_taurus
ENSG00000121486TRMT1L9997.619ENSCJAG00000005456TRMT1L10094.952Callithrix_jacchus
ENSG00000121486TRMT1L9998.571ENSCAFG00000013518TRMT1L9894.278Canis_familiaris
ENSG00000121486TRMT1L9998.571ENSCAFG00020015640TRMT1L10094.286Canis_lupus_dingo
ENSG00000121486TRMT1L9998.095ENSCHIG00000016522TRMT1L10091.498Capra_hircus
ENSG00000121486TRMT1L9997.143ENSTSYG00000010465TRMT1L10092.906Carlito_syrichta
ENSG00000121486TRMT1L7291.304ENSCAPG00000012562TRMT1L8990.942Cavia_aperea
ENSG00000121486TRMT1L9996.667ENSCPOG00000001567TRMT1L9890.436Cavia_porcellus
ENSG00000121486TRMT1L9999.048ENSCCAG00000018699TRMT1L10096.862Cebus_capucinus
ENSG00000121486TRMT1L10098.503ENSCATG00000043114TRMT1L10098.503Cercocebus_atys
ENSG00000121486TRMT1L9886.538ENSCLAG00000010853-9673.566Chinchilla_lanigera
ENSG00000121486TRMT1L9997.619ENSCLAG00000010801-9892.264Chinchilla_lanigera
ENSG00000121486TRMT1L10098.503ENSCSAG00000012880TRMT1L10098.503Chlorocebus_sabaeus
ENSG00000121486TRMT1L7399.351ENSCHOG00000011164TRMT1L8979.688Choloepus_hoffmanni
ENSG00000121486TRMT1L9983.333ENSCPBG00000015694TRMT1L9376.328Chrysemys_picta_bellii
ENSG00000121486TRMT1L10097.959ENSCANG00000031107TRMT1L10097.959Colobus_angolensis_palliatus
ENSG00000121486TRMT1L9996.190ENSCGRG00001019297Trmt1l10087.619Cricetulus_griseus_chok1gshd
ENSG00000121486TRMT1L9996.190ENSCGRG00000005036Trmt1l10087.619Cricetulus_griseus_crigri
ENSG00000121486TRMT1L9970.616ENSCSEG00000001248trmt1l9560.535Cynoglossus_semilaevis
ENSG00000121486TRMT1L9971.564ENSCVAG00000012274trmt1l9659.939Cyprinodon_variegatus
ENSG00000121486TRMT1L9970.952ENSDARG00000042057trmt1l9563.339Danio_rerio
ENSG00000121486TRMT1L9997.619ENSDNOG00000005239TRMT1L10091.429Dasypus_novemcinctus
ENSG00000121486TRMT1L9996.190ENSDORG00000003298Trmt1l9991.312Dipodomys_ordii
ENSG00000121486TRMT1L73100.000ENSETEG00000015895TRMT1L9180.717Echinops_telfairi
ENSG00000121486TRMT1L9362.944ENSEBUG00000010301trmt1l9747.907Eptatretus_burgeri
ENSG00000121486TRMT1L9998.578ENSEASG00005005551TRMT1L10089.218Equus_asinus_asinus
ENSG00000121486TRMT1L9998.571ENSECAG00000020999TRMT1L9592.973Equus_caballus
ENSG00000121486TRMT1L9975.787ENSEEUG00000014110TRMT1L9580.330Erinaceus_europaeus
ENSG00000121486TRMT1L9974.762ENSELUG00000020587trmt1l8863.968Esox_lucius
ENSG00000121486TRMT1L9996.190ENSFCAG00000011285TRMT1L10093.605Felis_catus
ENSG00000121486TRMT1L9979.524ENSFALG00000003177TRMT1L10071.560Ficedula_albicollis
ENSG00000121486TRMT1L9998.095ENSFDAG00000008822TRMT1L9890.730Fukomys_damarensis
ENSG00000121486TRMT1L9971.905ENSFHEG00000014328trmt1l9963.284Fundulus_heteroclitus
ENSG00000121486TRMT1L9969.378ENSGMOG00000009535trmt1l9861.699Gadus_morhua
ENSG00000121486TRMT1L9979.524ENSGALG00000033077TRMT1L8572.068Gallus_gallus
ENSG00000121486TRMT1L9771.220ENSGAFG00000012445trmt1l9359.571Gambusia_affinis
ENSG00000121486TRMT1L9970.000ENSGACG00000005050trmt1l9862.480Gasterosteus_aculeatus
ENSG00000121486TRMT1L9984.286ENSGAGG00000007441TRMT1L8676.372Gopherus_agassizii
ENSG00000121486TRMT1L10099.045ENSGGOG00000011778TRMT1L10099.045Gorilla_gorilla
ENSG00000121486TRMT1L9970.952ENSHBUG00000000622trmt1l9862.687Haplochromis_burtoni
ENSG00000121486TRMT1L9997.619ENSHGLG00000003135-9787.201Heterocephalus_glaber_female
ENSG00000121486TRMT1L10082.949ENSHGLG00000012595-9978.138Heterocephalus_glaber_female
ENSG00000121486TRMT1L9997.619ENSHGLG00100019412-9892.405Heterocephalus_glaber_male
ENSG00000121486TRMT1L10082.949ENSHGLG00100004569-9978.138Heterocephalus_glaber_male
ENSG00000121486TRMT1L9574.129ENSIPUG00000008873trmt1l9761.783Ictalurus_punctatus
ENSG00000121486TRMT1L9998.571ENSSTOG00000010332TRMT1L9894.093Ictidomys_tridecemlineatus
ENSG00000121486TRMT1L9996.667ENSJJAG00000010929Trmt1l10084.803Jaculus_jaculus
ENSG00000121486TRMT1L9275.258ENSKMAG00000010310trmt1l9260.979Kryptolebias_marmoratus
ENSG00000121486TRMT1L9273.711ENSLBEG00000003487trmt1l9359.939Labrus_bergylta
ENSG00000121486TRMT1L9273.711ENSLBEG00000007982-9260.237Labrus_bergylta
ENSG00000121486TRMT1L9677.451ENSLACG00000008447TRMT1L9568.315Latimeria_chalumnae
ENSG00000121486TRMT1L9775.728ENSLOCG00000001781trmt1l9063.721Lepisosteus_oculatus
ENSG00000121486TRMT1L9998.571ENSLAFG00000004339TRMT1L10091.678Loxodonta_africana
ENSG00000121486TRMT1L10098.367ENSMFAG00000037592TRMT1L10098.367Macaca_fascicularis
ENSG00000121486TRMT1L10098.231ENSMMUG00000013879TRMT1L10098.231Macaca_mulatta
ENSG00000121486TRMT1L10098.503ENSMNEG00000041637TRMT1L10098.503Macaca_nemestrina
ENSG00000121486TRMT1L10098.367ENSMLEG00000004840TRMT1L10098.367Mandrillus_leucophaeus
ENSG00000121486TRMT1L10069.811ENSMAMG00000015305trmt1l9863.089Mastacembelus_armatus
ENSG00000121486TRMT1L9970.952ENSMZEG00005017822trmt1l9360.983Maylandia_zebra
ENSG00000121486TRMT1L9980.000ENSMGAG00000000930TRMT1L9971.057Meleagris_gallopavo
ENSG00000121486TRMT1L9984.651ENSMAUG00000019870Trmt1l10082.249Mesocricetus_auratus
ENSG00000121486TRMT1L9999.048ENSMICG00000009494TRMT1L10096.044Microcebus_murinus
ENSG00000121486TRMT1L9993.810ENSMOCG00000016453Trmt1l10086.221Microtus_ochrogaster
ENSG00000121486TRMT1L9969.048ENSMMOG00000016961trmt1l9760.737Mola_mola
ENSG00000121486TRMT1L9989.524ENSMODG00000007454TRMT1L7680.611Monodelphis_domestica
ENSG00000121486TRMT1L9970.476ENSMALG00000019306trmt1l9161.417Monopterus_albus
ENSG00000121486TRMT1L9996.667MGP_CAROLIEiJ_G0014693Trmt1l10087.585Mus_caroli
ENSG00000121486TRMT1L9996.667ENSMUSG00000053286Trmt1l10087.722Mus_musculus
ENSG00000121486TRMT1L9996.190MGP_PahariEiJ_G0027929Trmt1l10087.483Mus_pahari
ENSG00000121486TRMT1L8787.103MGP_SPRETEiJ_G0015500Trmt1l10087.103Mus_spretus
ENSG00000121486TRMT1L10088.965ENSMPUG00000011859TRMT1L10090.872Mustela_putorius_furo
ENSG00000121486TRMT1L9996.667ENSMLUG00000001136TRMT1L10091.132Myotis_lucifugus
ENSG00000121486TRMT1L9996.667ENSNGAG00000011685Trmt1l9888.252Nannospalax_galili
ENSG00000121486TRMT1L9569.802ENSNBRG00000004053trmt1l9365.101Neolamprologus_brichardi
ENSG00000121486TRMT1L10098.909ENSNLEG00000018030TRMT1L10098.909Nomascus_leucogenys
ENSG00000121486TRMT1L6096.094ENSMEUG00000011344TRMT1L8571.739Notamacropus_eugenii
ENSG00000121486TRMT1L9985.714ENSOPRG00000000680TRMT1L9977.029Ochotona_princeps
ENSG00000121486TRMT1L9998.095ENSODEG00000000826TRMT1L9786.076Octodon_degus
ENSG00000121486TRMT1L9970.476ENSONIG00000007823trmt1l10063.099Oreochromis_niloticus
ENSG00000121486TRMT1L9984.762ENSOANG00000001010TRMT1L9975.385Ornithorhynchus_anatinus
ENSG00000121486TRMT1L9991.429ENSOCUG00000004896TRMT1L9287.939Oryctolagus_cuniculus
ENSG00000121486TRMT1L9970.000ENSORLG00000029610trmt1l9863.097Oryzias_latipes
ENSG00000121486TRMT1L9970.000ENSORLG00020002203trmt1l9460.949Oryzias_latipes_hni
ENSG00000121486TRMT1L9970.000ENSORLG00015021512trmt1l9460.949Oryzias_latipes_hsok
ENSG00000121486TRMT1L9271.649ENSOMEG00000016275trmt1l8760.342Oryzias_melastigma
ENSG00000121486TRMT1L9978.199ENSOGAG00000016186TRMT1L9981.173Otolemur_garnettii
ENSG00000121486TRMT1L9998.095ENSOARG00000003786TRMT1L10090.946Ovis_aries
ENSG00000121486TRMT1L10099.591ENSPPAG00000029141TRMT1L10099.591Pan_paniscus
ENSG00000121486TRMT1L9996.190ENSPPRG00000023981TRMT1L10093.469Panthera_pardus
ENSG00000121486TRMT1L9996.190ENSPTIG00000021754TRMT1L10093.605Panthera_tigris_altaica
ENSG00000121486TRMT1L10099.591ENSPTRG00000001776TRMT1L10099.591Pan_troglodytes
ENSG00000121486TRMT1L9998.571ENSPANG00000020890TRMT1L10095.522Papio_anubis
ENSG00000121486TRMT1L9773.659ENSPKIG00000005941trmt1l9062.112Paramormyrops_kingsleyae
ENSG00000121486TRMT1L10082.547ENSPSIG00000010011TRMT1L9575.772Pelodiscus_sinensis
ENSG00000121486TRMT1L9261.929ENSPMGG00000021359trmt1l9558.590Periophthalmus_magnuspinnatus
ENSG00000121486TRMT1L9996.667ENSPEMG00000000031Trmt1l10086.630Peromyscus_maniculatus_bairdii
ENSG00000121486TRMT1L9962.963ENSPMAG00000005838trmt1l10058.121Petromyzon_marinus
ENSG00000121486TRMT1L9989.573ENSPCIG00000002409TRMT1L8780.335Phascolarctos_cinereus
ENSG00000121486TRMT1L9970.755ENSPFOG00000003872trmt1l9962.559Poecilia_formosa
ENSG00000121486TRMT1L9970.476ENSPLAG00000010387trmt1l9360.522Poecilia_latipinna
ENSG00000121486TRMT1L9970.476ENSPMEG00000011828trmt1l9962.623Poecilia_mexicana
ENSG00000121486TRMT1L9970.476ENSPREG00000002866trmt1l9360.522Poecilia_reticulata
ENSG00000121486TRMT1L10098.772ENSPPYG00000000416TRMT1L10098.772Pongo_abelii
ENSG00000121486TRMT1L8789.600ENSPCAG00000008257TRMT1L8989.600Procavia_capensis
ENSG00000121486TRMT1L8685.644ENSPCOG00000005682TRMT1L9385.644Propithecus_coquereli
ENSG00000121486TRMT1L9998.095ENSPVAG00000005961TRMT1L10083.401Pteropus_vampyrus
ENSG00000121486TRMT1L9970.000ENSPNYG00000005607trmt1l9862.852Pundamilia_nyererei
ENSG00000121486TRMT1L9972.381ENSPNAG00000004389trmt1l8862.934Pygocentrus_nattereri
ENSG00000121486TRMT1L9995.714ENSRNOG00000002580Trmt1l10086.903Rattus_norvegicus
ENSG00000121486TRMT1L10098.231ENSRBIG00000042589TRMT1L10098.231Rhinopithecus_bieti
ENSG00000121486TRMT1L10098.231ENSRROG00000032183TRMT1L10098.231Rhinopithecus_roxellana
ENSG00000121486TRMT1L9997.619ENSSBOG00000029282TRMT1L10095.907Saimiri_boliviensis_boliviensis
ENSG00000121486TRMT1L9975.120ENSSFOG00015004878trmt1l9163.003Scleropages_formosus
ENSG00000121486TRMT1L5671.429ENSSMAG00000015425trmt1l9071.429Scophthalmus_maximus
ENSG00000121486TRMT1L9970.952ENSSDUG00000021807trmt1l9963.339Seriola_dumerili
ENSG00000121486TRMT1L9970.000ENSSLDG00000016579trmt1l9963.175Seriola_lalandi_dorsalis
ENSG00000121486TRMT1L9991.905ENSSARG00000010135TRMT1L8783.257Sorex_araneus
ENSG00000121486TRMT1L9983.333ENSSPUG00000003927TRMT1L9976.568Sphenodon_punctatus
ENSG00000121486TRMT1L9972.249ENSSPAG00000008597trmt1l9361.290Stegastes_partitus
ENSG00000121486TRMT1L9596.517ENSSSCG00000021393TRMT1L9885.658Sus_scrofa
ENSG00000121486TRMT1L9979.048ENSTGUG00000003737TRMT1L9671.716Taeniopygia_guttata
ENSG00000121486TRMT1L9272.165ENSTRUG00000002396trmt1l9377.083Takifugu_rubripes
ENSG00000121486TRMT1L9966.190ENSTNIG00000005534trmt1l9964.319Tetraodon_nigroviridis
ENSG00000121486TRMT1L8688.119ENSTBEG00000016498TRMT1L8488.164Tupaia_belangeri
ENSG00000121486TRMT1L9998.571ENSTTRG00000005892TRMT1L10091.008Tursiops_truncatus
ENSG00000121486TRMT1L9998.571ENSUAMG00000020936TRMT1L10094.286Ursus_americanus
ENSG00000121486TRMT1L9998.571ENSUMAG00000021919TRMT1L9994.142Ursus_maritimus
ENSG00000121486TRMT1L9997.143ENSVPAG00000011854TRMT1L10093.884Vicugna_pacos
ENSG00000121486TRMT1L9998.571ENSVVUG00000009166TRMT1L10094.150Vulpes_vulpes
ENSG00000121486TRMT1L9869.231ENSXETG00000004539trmt1l9560.311Xenopus_tropicalis
ENSG00000121486TRMT1L9670.098ENSXCOG00000007372trmt1l9162.203Xiphophorus_couchianus
ENSG00000121486TRMT1L9970.000ENSXMAG00000003575trmt1l9862.355Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding-IEAFunction
GO:0002940tRNA N2-guanine methylation21873635.IBAProcess
GO:0003723RNA binding22658674.HDAFunction
GO:0004809tRNA (guanine-N2-)-methyltransferase activity21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0007610behavior-IEAProcess
GO:0046872metal ion binding-IEAFunction

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