EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000121766 (Gene tree)
Gene ID
51538
Gene Symbol
ZCCHC17
Alias
PS1D|HSPC251|pNO40
Full Name
zinc finger CCHC-type containing 17
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
68,741 bases
Position
chr1:31,296,982-31,365,722
Accession
30246
RBP type
canonical RBP
Summary
(Zinc Finger CCHC-Type Containing 17) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000481299S1PF00575.234.1e-1011
ENSP00000343557S1PF00575.238.8e-1011
ENSP00000362819S1PF00575.238.8e-1011
ENSP00000480986S1PF00575.239.1e-0811
ENSP00000481743S1PF00575.232.1e-0711
ENSP00000444742S1PF00575.233.7e-0711
ENSP00000486079S1PF00575.231.6e-0611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
12893261Molecular characterization of a novel nucleolar protein, pNO40.Biochem Biophys Res Commun2003 Aug 1Chang WL-
12202495Identification of ribosomal proteins specific to higher eukaryotic organisms.J Biol Chem2002 Nov 22Gueydan C-
31217076Ectopically expressed pNO40 suppresses ribosomal RNA synthesis by inhibiting UBF-dependent transcription activation.Biochem Biophys Res Commun2019 Aug 20Lin YMdoi: 10.1016/j.bbrc.2019.06.057
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000344147ZCCHC17-2011605-ENSP00000343557241 (aa)-Q9NP64
ENST00000373714ZCCHC17-2021730-ENSP00000362819241 (aa)-Q9NP64
ENST00000618216ZCCHC17-2081489-ENSP00000481299146 (aa)-A0A087WXU5
ENST00000627541ZCCHC17-2091158-ENSP00000486079243 (aa)-A0A0D9SEW3
ENST00000615916ZCCHC17-2051652-ENSP00000480986263 (aa)-A0A087WXF8
ENST00000616393ZCCHC17-2061534-ENSP00000482122179 (aa)-A0A087WYV3
ENST00000479629ZCCHC17-203761--- (aa)--
ENST00000546109ZCCHC17-2041705XM_006710681ENSP00000444742233 (aa)XP_006710744Q9NP64
ENST00000616859ZCCHC17-2071458-ENSP00000481743160 (aa)-A0A087WYF0
Gene Model
Click here to download ENSG00000121766's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000121766Schizophrenia4E-626198764
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000121766rs7551345131359023ASchizophrenia26198764[NR]1.07EFO_0000692
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000121766's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000121766ZCCHC179660.000ENSAPOG00000021724zcchc176260.645Acanthochromis_polyacanthus
ENSG00000121766ZCCHC1710099.170ENSAMEG00000017710-10099.170Ailuropoda_melanoleuca
ENSG00000121766ZCCHC1710060.959ENSACIG00000020915zcchc179860.959Amphilophus_citrinellus
ENSG00000121766ZCCHC179660.000ENSAOCG00000003880zcchc176360.645Amphiprion_ocellaris
ENSG00000121766ZCCHC179660.000ENSAPEG00000014460zcchc176460.645Amphiprion_percula
ENSG00000121766ZCCHC179958.333ENSATEG00000015942zcchc176559.119Anabas_testudineus
ENSG00000121766ZCCHC179872.028ENSACAG00000000389ZCCHC176675.949Anolis_carolinensis
ENSG00000121766ZCCHC17100100.000ENSANAG00000024208ZCCHC17100100.000Aotus_nancymaae
ENSG00000121766ZCCHC179660.714ENSACLG00000019174zcchc176261.290Astatotilapia_calliptera
ENSG00000121766ZCCHC179864.336ENSAMXG00000020595zcchc176965.823Astyanax_mexicanus
ENSG00000121766ZCCHC1710099.170ENSBTAG00000016818ZCCHC1710099.170Bos_taurus
ENSG00000121766ZCCHC179991.724ENSBTAG00000001432-9394.619Bos_taurus
ENSG00000121766ZCCHC1710099.315ENSCJAG00000006259ZCCHC1710099.315Callithrix_jacchus
ENSG00000121766ZCCHC1710096.266ENSCJAG00000045207-10096.266Callithrix_jacchus
ENSG00000121766ZCCHC1710095.436ENSCAFG00000001857-10095.436Canis_familiaris
ENSG00000121766ZCCHC1710099.585ENSCAFG00000011131-10099.585Canis_familiaris
ENSG00000121766ZCCHC179980.503ENSCAFG00020016304-7480.503Canis_lupus_dingo
ENSG00000121766ZCCHC179799.291ENSCAFG00020024828ZCCHC1710090.756Canis_lupus_dingo
ENSG00000121766ZCCHC179592.806ENSCAFG00020016032-9289.116Canis_lupus_dingo
ENSG00000121766ZCCHC1710099.170ENSCHIG00000015629-10099.170Capra_hircus
ENSG00000121766ZCCHC1710099.315ENSTSYG00000000490-10099.315Carlito_syrichta
ENSG00000121766ZCCHC179994.483ENSCAPG00000006774ZCCHC178496.175Cavia_aperea
ENSG00000121766ZCCHC179995.172ENSCPOG00000022394-8997.268Cavia_porcellus
ENSG00000121766ZCCHC1710097.925ENSCPOG00000000106ZCCHC1710097.925Cavia_porcellus
ENSG00000121766ZCCHC17100100.000ENSCCAG00000033666ZCCHC17100100.000Cebus_capucinus
ENSG00000121766ZCCHC17100100.000ENSCATG00000044586ZCCHC17100100.000Cercocebus_atys
ENSG00000121766ZCCHC1710098.755ENSCLAG00000008794ZCCHC1710098.755Chinchilla_lanigera
ENSG00000121766ZCCHC17100100.000ENSCSAG00000001032ZCCHC17100100.000Chlorocebus_sabaeus
ENSG00000121766ZCCHC179482.743ENSCHOG00000001581ZCCHC179382.960Choloepus_hoffmanni
ENSG00000121766ZCCHC1710099.315ENSCANG00000038509ZCCHC1710099.315Colobus_angolensis_palliatus
ENSG00000121766ZCCHC1796100.000ENSCGRG00001014387Zcchc179392.857Cricetulus_griseus_chok1gshd
ENSG00000121766ZCCHC1796100.000ENSCGRG00000013323Zcchc179392.857Cricetulus_griseus_crigri
ENSG00000121766ZCCHC179763.121ENSCSEG00000016039zcchc179565.068Cynoglossus_semilaevis
ENSG00000121766ZCCHC179662.143ENSCVAG00000007112zcchc176262.581Cyprinodon_variegatus
ENSG00000121766ZCCHC179667.143ENSDARG00000018936zcchc176668.387Danio_rerio
ENSG00000121766ZCCHC1710097.510ENSDNOG00000000509-10097.510Dasypus_novemcinctus
ENSG00000121766ZCCHC179798.592ENSDORG00000004128Zcchc1792100.000Dipodomys_ordii
ENSG00000121766ZCCHC1796100.000ENSETEG00000007421ZCCHC179395.516Echinops_telfairi
ENSG00000121766ZCCHC1710097.510ENSEASG00005010819ZCCHC1710097.510Equus_asinus_asinus
ENSG00000121766ZCCHC1710097.510ENSECAG00000025040ZCCHC178897.510Equus_caballus
ENSG00000121766ZCCHC179993.103ENSEEUG00000014855ZCCHC179394.619Erinaceus_europaeus
ENSG00000121766ZCCHC179667.143ENSELUG00000002450zcchc176468.421Esox_lucius
ENSG00000121766ZCCHC17100100.000ENSFCAG00000004196ZCCHC1710098.712Felis_catus
ENSG00000121766ZCCHC179980.556ENSFALG00000001165ZCCHC176483.544Ficedula_albicollis
ENSG00000121766ZCCHC1710097.510ENSFDAG00000016520ZCCHC1710097.510Fukomys_damarensis
ENSG00000121766ZCCHC179657.857ENSFHEG00000007848zcchc176358.710Fundulus_heteroclitus
ENSG00000121766ZCCHC179659.286ENSGMOG00000010452zcchc176160.645Gadus_morhua
ENSG00000121766ZCCHC179481.022ENSGALG00000000618ZCCHC176483.553Gallus_gallus
ENSG00000121766ZCCHC179658.571ENSGAFG00000015591zcchc176359.355Gambusia_affinis
ENSG00000121766ZCCHC179660.714ENSGACG00000005616zcchc176061.935Gasterosteus_aculeatus
ENSG00000121766ZCCHC179981.379ENSGAGG00000019515ZCCHC176583.125Gopherus_agassizii
ENSG00000121766ZCCHC17100100.000ENSGGOG00000009126ZCCHC17100100.000Gorilla_gorilla
ENSG00000121766ZCCHC179660.714ENSHBUG00000018638zcchc176261.290Haplochromis_burtoni
ENSG00000121766ZCCHC179692.857ENSHGLG00000005931-9285.202Heterocephalus_glaber_female
ENSG00000121766ZCCHC1710098.340ENSHGLG00000019323ZCCHC1710098.340Heterocephalus_glaber_female
ENSG00000121766ZCCHC179782.979ENSHGLG00000014866-9272.646Heterocephalus_glaber_female
ENSG00000121766ZCCHC179798.582ENSHGLG00100014521ZCCHC1710091.845Heterocephalus_glaber_male
ENSG00000121766ZCCHC179988.966ENSHGLG00100019907-9391.480Heterocephalus_glaber_male
ENSG00000121766ZCCHC179692.857ENSHGLG00100009772-8292.350Heterocephalus_glaber_male
ENSG00000121766ZCCHC179782.979ENSHGLG00100000976-9272.646Heterocephalus_glaber_male
ENSG00000121766ZCCHC179660.714ENSHCOG00000005075zcchc176361.935Hippocampus_comes
ENSG00000121766ZCCHC179864.583ENSIPUG00000020511zcchc176966.667Ictalurus_punctatus
ENSG00000121766ZCCHC1710097.510ENSSTOG00000003825ZCCHC1710097.510Ictidomys_tridecemlineatus
ENSG00000121766ZCCHC179958.333ENSKMAG00000003662zcchc176459.119Kryptolebias_marmoratus
ENSG00000121766ZCCHC179859.441ENSLBEG00000002644zcchc176360.127Labrus_bergylta
ENSG00000121766ZCCHC179276.866ENSLACG00000016945ZCCHC176571.053Latimeria_chalumnae
ENSG00000121766ZCCHC179475.912ENSLOCG00000005280zcchc175976.974Lepisosteus_oculatus
ENSG00000121766ZCCHC1710096.735ENSLAFG00000015364ZCCHC1710096.735Loxodonta_africana
ENSG00000121766ZCCHC17100100.000ENSMFAG00000039045ZCCHC17100100.000Macaca_fascicularis
ENSG00000121766ZCCHC17100100.000ENSMMUG00000012156ZCCHC17100100.000Macaca_mulatta
ENSG00000121766ZCCHC17100100.000ENSMNEG00000032021ZCCHC17100100.000Macaca_nemestrina
ENSG00000121766ZCCHC17100100.000ENSMLEG00000040817ZCCHC17100100.000Mandrillus_leucophaeus
ENSG00000121766ZCCHC179960.690ENSMAMG00000011701zcchc179750.622Mastacembelus_armatus
ENSG00000121766ZCCHC179660.714ENSMZEG00005005784zcchc176261.290Maylandia_zebra
ENSG00000121766ZCCHC179579.856ENSMGAG00000000777ZCCHC176283.553Meleagris_gallopavo
ENSG00000121766ZCCHC178496.748ENSMAUG00000005269Zcchc177295.652Mesocricetus_auratus
ENSG00000121766ZCCHC179985.517ENSMICG00000028289-9387.444Microcebus_murinus
ENSG00000121766ZCCHC179980.690ENSMICG00000027526-6883.444Microcebus_murinus
ENSG00000121766ZCCHC1710099.315ENSMICG00000009354-10099.315Microcebus_murinus
ENSG00000121766ZCCHC177892.800ENSMICG00000035778-6892.800Microcebus_murinus
ENSG00000121766ZCCHC1796100.000ENSMOCG00000014937Zcchc179395.067Microtus_ochrogaster
ENSG00000121766ZCCHC179560.432ENSMMOG00000019813zcchc176757.143Mola_mola
ENSG00000121766ZCCHC179982.069ENSMODG00000017082-6585.625Monodelphis_domestica
ENSG00000121766ZCCHC179076.336ENSMODG00000025345-7375.000Monodelphis_domestica
ENSG00000121766ZCCHC179975.172ENSMODG00000020372-8679.375Monodelphis_domestica
ENSG00000121766ZCCHC179660.714ENSMALG00000016295zcchc176661.935Monopterus_albus
ENSG00000121766ZCCHC179996.552MGP_CAROLIEiJ_G0026546Zcchc179395.067Mus_caroli
ENSG00000121766ZCCHC179996.552ENSMUSG00000028772Zcchc179395.067Mus_musculus
ENSG00000121766ZCCHC179996.552MGP_PahariEiJ_G0028878Zcchc179395.067Mus_pahari
ENSG00000121766ZCCHC179996.552MGP_SPRETEiJ_G0027526Zcchc179394.619Mus_spretus
ENSG00000121766ZCCHC179497.041ENSMPUG00000015442ZCCHC179392.377Mustela_putorius_furo
ENSG00000121766ZCCHC179997.241ENSMLUG00000000594ZCCHC179396.413Myotis_lucifugus
ENSG00000121766ZCCHC179994.483ENSNGAG00000022689Zcchc179395.089Nannospalax_galili
ENSG00000121766ZCCHC176843.434ENSNBRG00000010797zcchc176543.434Neolamprologus_brichardi
ENSG00000121766ZCCHC17100100.000ENSNLEG00000001493ZCCHC17100100.000Nomascus_leucogenys
ENSG00000121766ZCCHC178594.416ENSOPRG00000014449ZCCHC1710094.416Ochotona_princeps
ENSG00000121766ZCCHC1710097.925ENSODEG00000003683ZCCHC1710097.925Octodon_degus
ENSG00000121766ZCCHC179660.714ENSONIG00000002308zcchc176361.290Oreochromis_niloticus
ENSG00000121766ZCCHC179997.241ENSOCUG00000014599-7384.375Oryctolagus_cuniculus
ENSG00000121766ZCCHC179987.586ENSOCUG00000027238-9282.511Oryctolagus_cuniculus
ENSG00000121766ZCCHC179959.028ENSORLG00000011563zcchc177159.748Oryzias_latipes
ENSG00000121766ZCCHC179959.028ENSORLG00020019636zcchc177559.748Oryzias_latipes_hni
ENSG00000121766ZCCHC179959.028ENSORLG00015011437zcchc176559.748Oryzias_latipes_hsok
ENSG00000121766ZCCHC179959.722ENSOMEG00000009464zcchc176460.377Oryzias_melastigma
ENSG00000121766ZCCHC179996.552ENSOGAG00000013749ZCCHC179396.413Otolemur_garnettii
ENSG00000121766ZCCHC1710098.760ENSOARG00000001618-10098.760Ovis_aries
ENSG00000121766ZCCHC17100100.000ENSPPAG00000030937ZCCHC17100100.000Pan_paniscus
ENSG00000121766ZCCHC1710099.585ENSPPRG00000003044ZCCHC1710099.585Panthera_pardus
ENSG00000121766ZCCHC1710099.315ENSPTIG00000010650ZCCHC1710099.170Panthera_tigris_altaica
ENSG00000121766ZCCHC17100100.000ENSPTRG00000000456ZCCHC17100100.000Pan_troglodytes
ENSG00000121766ZCCHC17100100.000ENSPANG00000016167ZCCHC17100100.000Papio_anubis
ENSG00000121766ZCCHC179469.343ENSPKIG00000010742zcchc176169.079Paramormyrops_kingsleyae
ENSG00000121766ZCCHC179980.000ENSPSIG00000007187ZCCHC176581.875Pelodiscus_sinensis
ENSG00000121766ZCCHC179659.286ENSPMGG00000005830zcchc176360.000Periophthalmus_magnuspinnatus
ENSG00000121766ZCCHC179996.552ENSPEMG00000015853-9394.619Peromyscus_maniculatus_bairdii
ENSG00000121766ZCCHC179980.000ENSPCIG00000014143-6683.125Phascolarctos_cinereus
ENSG00000121766ZCCHC179658.571ENSPFOG00000007896zcchc176659.355Poecilia_formosa
ENSG00000121766ZCCHC179658.571ENSPLAG00000007114zcchc176259.355Poecilia_latipinna
ENSG00000121766ZCCHC179658.571ENSPMEG00000014567zcchc176259.355Poecilia_mexicana
ENSG00000121766ZCCHC179658.571ENSPREG00000005325zcchc175159.355Poecilia_reticulata
ENSG00000121766ZCCHC1710098.755ENSPPYG00000001617-8598.755Pongo_abelii
ENSG00000121766ZCCHC1710092.946ENSPCAG00000011665ZCCHC1710092.946Procavia_capensis
ENSG00000121766ZCCHC1710099.315ENSPCOG00000024007ZCCHC1710099.315Propithecus_coquereli
ENSG00000121766ZCCHC1710098.340ENSPVAG00000014747ZCCHC1710098.340Pteropus_vampyrus
ENSG00000121766ZCCHC179660.714ENSPNYG00000009648zcchc179562.500Pundamilia_nyererei
ENSG00000121766ZCCHC179667.857ENSPNAG00000026780zcchc176669.677Pygocentrus_nattereri
ENSG00000121766ZCCHC1796100.000ENSRNOG00000012266Zcchc179394.619Rattus_norvegicus
ENSG00000121766ZCCHC17100100.000ENSRBIG00000033939ZCCHC17100100.000Rhinopithecus_bieti
ENSG00000121766ZCCHC17100100.000ENSRROG00000028866ZCCHC17100100.000Rhinopithecus_roxellana
ENSG00000121766ZCCHC17100100.000ENSSBOG00000029249ZCCHC17100100.000Saimiri_boliviensis_boliviensis
ENSG00000121766ZCCHC179982.759ENSSHAG00000008748ZCCHC176785.625Sarcophilus_harrisii
ENSG00000121766ZCCHC179572.464ENSSFOG00015021334zcchc176073.856Scleropages_formosus
ENSG00000121766ZCCHC179859.441ENSSMAG00000010817zcchc176160.127Scophthalmus_maximus
ENSG00000121766ZCCHC179660.000ENSSDUG00000009095zcchc176160.645Seriola_dumerili
ENSG00000121766ZCCHC179959.028ENSSLDG00000009837zcchc178953.476Seriola_lalandi_dorsalis
ENSG00000121766ZCCHC179679.286ENSSPUG00000006912ZCCHC176380.625Sphenodon_punctatus
ENSG00000121766ZCCHC179659.286ENSSPAG00000016785zcchc176260.000Stegastes_partitus
ENSG00000121766ZCCHC1710097.925ENSSSCG00000031639ZCCHC1710097.925Sus_scrofa
ENSG00000121766ZCCHC178575.000ENSTGUG00000000817ZCCHC176378.417Taeniopygia_guttata
ENSG00000121766ZCCHC179661.429ENSTRUG00000013252zcchc176361.935Takifugu_rubripes
ENSG00000121766ZCCHC179658.571ENSTNIG00000016980zcchc176559.355Tetraodon_nigroviridis
ENSG00000121766ZCCHC1710099.170ENSTTRG00000014870ZCCHC1710099.170Tursiops_truncatus
ENSG00000121766ZCCHC179997.241ENSUAMG00000018258ZCCHC179698.936Ursus_americanus
ENSG00000121766ZCCHC1710099.170ENSUMAG00000009188-10099.170Ursus_maritimus
ENSG00000121766ZCCHC1710097.095ENSVPAG00000003834ZCCHC1710097.095Vicugna_pacos
ENSG00000121766ZCCHC179476.642ENSXETG00000012917zcchc178680.263Xenopus_tropicalis
ENSG00000121766ZCCHC179657.857ENSXCOG00000020147zcchc176558.710Xiphophorus_couchianus
ENSG00000121766ZCCHC179657.857ENSXMAG00000002980zcchc176358.710Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding16189514.21516116.23455924.25416956.IPIFunction
GO:0005730nucleolus-IEAComponent
GO:0008270zinc ion binding-IEAFunction

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