EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Phenotypes

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000122435 (Gene tree)
Gene ID: 54482
Gene Symbol: TRMT13
Alias: FLJ10287|FLJ11219|CCDC76
Full Name: tRNA methyltransferase 13 homolog
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 17,352 bases
Position: chr1:100,133,147-100,150,498
Accession: 25502
RBP type: canonical RBP
Summary: (TRNA Methyltransferase 13 Homolog) is a Protein Coding gene. Among its related pathways are Gene Expression and tRNA processing. Gene Ontology (GO) annotations related to this gene include methyltransferase activity and tRNA methyltransferase activity.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000359160	TRM13	PF05206.14	2e-91	1	1
ENSP00000359158	zf-U11-48K	PF05253.12	1.8e-09	1	1
ENSP00000359162	zf-U11-48K	PF05253.12	1.9e-09	1	1
ENSP00000359160	zf-U11-48K	PF05253.12	9.9e-09	1	1
ENSP00000359162	zf-TRM13_CCCH	PF11722.8	1.3e-13	1	1
ENSP00000359160	zf-TRM13_CCCH	PF11722.8	1.9e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000370139	TRMT13-201	711	-	ENSP00000359158	130 (aa)	-	Q5VVK9
ENST00000370141	TRMT13-202	3129	XM_005270945	ENSP00000359160	481 (aa)	XP_005271002	Q9NUP7
ENST00000370143	TRMT13-203	476	-	ENSP00000359162	109 (aa)	-	Q5VVL2
ENST00000493651	TRMT13-205	586	-	-	- (aa)	-	-
ENST00000482437	TRMT13-204	1582	-	ENSP00000432616	175 (aa)	-	Q9NUP7

Gene Model

Click here to download ENSG00000122435's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000122435	Alzheimer Disease	4.7771255E-005	17998437
ENSG00000122435	Macular Degeneration	2.474E-05	20385819

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000122435's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000122435	TRMT13	94	53.676	ENSAPOG00000015131	trmt13	99	47.896	Acanthochromis_polyacanthus
ENSG00000122435	TRMT13	100	90.437	ENSAMEG00000008917	TRMT13	100	90.437	Ailuropoda_melanoleuca
ENSG00000122435	TRMT13	99	50.813	ENSACIG00000005804	trmt13	99	50.758	Amphilophus_citrinellus
ENSG00000122435	TRMT13	94	54.412	ENSAOCG00000023585	trmt13	99	48.805	Amphiprion_ocellaris
ENSG00000122435	TRMT13	94	54.412	ENSAPEG00000004025	trmt13	99	48.413	Amphiprion_percula
ENSG00000122435	TRMT13	88	64.583	ENSATEG00000006597	trmt13	97	51.464	Anabas_testudineus
ENSG00000122435	TRMT13	88	67.840	ENSAPLG00000014924	TRMT13	99	67.840	Anas_platyrhynchos
ENSG00000122435	TRMT13	96	64.224	ENSACAG00000003498	TRMT13	98	64.224	Anolis_carolinensis
ENSG00000122435	TRMT13	100	97.505	ENSANAG00000019525	TRMT13	100	98.165	Aotus_nancymaae
ENSG00000122435	TRMT13	96	53.390	ENSACLG00000020018	trmt13	99	53.390	Astatotilapia_calliptera
ENSG00000122435	TRMT13	96	54.676	ENSAMXG00000017963	trmt13	97	55.460	Astyanax_mexicanus
ENSG00000122435	TRMT13	100	90.644	ENSBTAG00000015781	TRMT13	100	90.644	Bos_taurus
ENSG00000122435	TRMT13	100	97.248	ENSCJAG00000000200	TRMT13	99	98.165	Callithrix_jacchus
ENSG00000122435	TRMT13	65	92.038	ENSCAFG00000020021	TRMT13	99	92.038	Canis_familiaris
ENSG00000122435	TRMT13	100	86.364	ENSCAFG00020011572	TRMT13	95	91.636	Canis_lupus_dingo
ENSG00000122435	TRMT13	100	90.852	ENSCHIG00000015395	TRMT13	100	90.852	Capra_hircus
ENSG00000122435	TRMT13	100	90.769	ENSTSYG00000010811	TRMT13	100	90.769	Carlito_syrichta
ENSG00000122435	TRMT13	75	69.589	ENSCAPG00000009085	TRMT13	100	70.137	Cavia_aperea
ENSG00000122435	TRMT13	100	89.189	ENSCPOG00000000694	TRMT13	100	89.189	Cavia_porcellus
ENSG00000122435	TRMT13	100	97.297	ENSCCAG00000023772	TRMT13	100	97.297	Cebus_capucinus
ENSG00000122435	TRMT13	100	97.713	ENSCATG00000033556	TRMT13	100	97.713	Cercocebus_atys
ENSG00000122435	TRMT13	89	84.543	ENSCLAG00000008220	TRMT13	100	85.246	Chinchilla_lanigera
ENSG00000122435	TRMT13	100	98.337	ENSCSAG00000001506	TRMT13	100	98.337	Chlorocebus_sabaeus
ENSG00000122435	TRMT13	99	68.958	ENSCPBG00000026671	TRMT13	99	68.958	Chrysemys_picta_bellii
ENSG00000122435	TRMT13	100	98.545	ENSCANG00000034659	TRMT13	100	98.545	Colobus_angolensis_palliatus
ENSG00000122435	TRMT13	99	85.744	ENSCGRG00001021601	Trmt13	99	85.744	Cricetulus_griseus_chok1gshd
ENSG00000122435	TRMT13	53	83.268	ENSCGRG00000000093	-	99	83.268	Cricetulus_griseus_crigri
ENSG00000122435	TRMT13	96	48.922	ENSCSEG00000000591	trmt13	98	48.922	Cynoglossus_semilaevis
ENSG00000122435	TRMT13	96	51.429	ENSCVAG00000017342	trmt13	93	49.684	Cyprinodon_variegatus
ENSG00000122435	TRMT13	95	57.974	ENSDARG00000102846	trmt13	96	57.974	Danio_rerio
ENSG00000122435	TRMT13	100	81.416	ENSDNOG00000001710	TRMT13	84	88.406	Dasypus_novemcinctus
ENSG00000122435	TRMT13	100	87.526	ENSDORG00000015808	Trmt13	99	87.526	Dipodomys_ordii
ENSG00000122435	TRMT13	95	30.818	FBgn0037435	CG18048	94	30.818	Drosophila_melanogaster
ENSG00000122435	TRMT13	99	83.929	ENSETEG00000005819	TRMT13	99	75.992	Echinops_telfairi
ENSG00000122435	TRMT13	95	45.396	ENSEBUG00000014444	trmt13	96	45.474	Eptatretus_burgeri
ENSG00000122435	TRMT13	100	92.723	ENSEASG00005015918	TRMT13	100	92.723	Equus_asinus_asinus
ENSG00000122435	TRMT13	100	93.139	ENSECAG00000022626	TRMT13	100	93.139	Equus_caballus
ENSG00000122435	TRMT13	95	86.747	ENSEEUG00000000294	TRMT13	80	80.696	Erinaceus_europaeus
ENSG00000122435	TRMT13	96	56.835	ENSELUG00000003803	trmt13	98	56.652	Esox_lucius
ENSG00000122435	TRMT13	99	96.124	ENSFCAG00000030618	TRMT13	99	96.124	Felis_catus
ENSG00000122435	TRMT13	99	64.644	ENSFALG00000002424	TRMT13	99	64.644	Ficedula_albicollis
ENSG00000122435	TRMT13	99	90.336	ENSFDAG00000006342	TRMT13	99	90.336	Fukomys_damarensis
ENSG00000122435	TRMT13	96	47.857	ENSFHEG00000022954	trmt13	97	51.122	Fundulus_heteroclitus
ENSG00000122435	TRMT13	96	48.507	ENSGMOG00000013223	trmt13	100	49.451	Gadus_morhua
ENSG00000122435	TRMT13	95	65.714	ENSGALG00000005290	TRMT13	98	64.968	Gallus_gallus
ENSG00000122435	TRMT13	95	51.200	ENSGAFG00000001577	trmt13	81	51.613	Gambusia_affinis
ENSG00000122435	TRMT13	96	50.360	ENSGACG00000013428	trmt13	97	50.968	Gasterosteus_aculeatus
ENSG00000122435	TRMT13	97	70.362	ENSGAGG00000023303	TRMT13	95	75.573	Gopherus_agassizii
ENSG00000122435	TRMT13	100	99.376	ENSGGOG00000005616	TRMT13	100	99.376	Gorilla_gorilla
ENSG00000122435	TRMT13	96	53.602	ENSHBUG00000007754	trmt13	99	53.602	Haplochromis_burtoni
ENSG00000122435	TRMT13	99	90.966	ENSHGLG00000002164	TRMT13	99	90.966	Heterocephalus_glaber_female
ENSG00000122435	TRMT13	99	90.966	ENSHGLG00100001618	TRMT13	99	90.966	Heterocephalus_glaber_male
ENSG00000122435	TRMT13	98	47.780	ENSHCOG00000020553	trmt13	99	47.357	Hippocampus_comes
ENSG00000122435	TRMT13	95	57.267	ENSIPUG00000024787	trmt13	98	58.225	Ictalurus_punctatus
ENSG00000122435	TRMT13	100	93.347	ENSSTOG00000013483	TRMT13	100	93.347	Ictidomys_tridecemlineatus
ENSG00000122435	TRMT13	99	88.235	ENSJJAG00000018012	Trmt13	100	87.708	Jaculus_jaculus
ENSG00000122435	TRMT13	64	50.799	ENSKMAG00000007639	trmt13	92	50.799	Kryptolebias_marmoratus
ENSG00000122435	TRMT13	87	64.211	ENSLBEG00000020238	trmt13	99	51.148	Labrus_bergylta
ENSG00000122435	TRMT13	96	62.716	ENSLACG00000013153	TRMT13	100	61.692	Latimeria_chalumnae
ENSG00000122435	TRMT13	96	59.712	ENSLOCG00000000418	trmt13	97	58.952	Lepisosteus_oculatus
ENSG00000122435	TRMT13	77	88.919	ENSLAFG00000002383	TRMT13	100	88.919	Loxodonta_africana
ENSG00000122435	TRMT13	100	97.921	ENSMFAG00000034681	TRMT13	100	97.921	Macaca_fascicularis
ENSG00000122435	TRMT13	100	97.921	ENSMMUG00000004243	TRMT13	100	97.921	Macaca_mulatta
ENSG00000122435	TRMT13	100	97.921	ENSMNEG00000036102	TRMT13	100	97.921	Macaca_nemestrina
ENSG00000122435	TRMT13	100	97.713	ENSMLEG00000034258	TRMT13	100	97.713	Mandrillus_leucophaeus
ENSG00000122435	TRMT13	96	51.477	ENSMAMG00000016597	trmt13	98	51.477	Mastacembelus_armatus
ENSG00000122435	TRMT13	96	53.178	ENSMZEG00005020959	trmt13	99	53.178	Maylandia_zebra
ENSG00000122435	TRMT13	89	66.511	ENSMGAG00000006970	TRMT13	100	66.511	Meleagris_gallopavo
ENSG00000122435	TRMT13	99	84.167	ENSMAUG00000010448	Trmt13	99	84.167	Mesocricetus_auratus
ENSG00000122435	TRMT13	100	96.923	ENSMICG00000005283	TRMT13	100	96.923	Microcebus_murinus
ENSG00000122435	TRMT13	100	81.651	ENSMOCG00000019914	Trmt13	99	81.250	Microtus_ochrogaster
ENSG00000122435	TRMT13	94	38.235	ENSMMOG00000007762	trmt13	89	50.943	Mola_mola
ENSG00000122435	TRMT13	100	76.082	ENSMODG00000003646	TRMT13	100	76.082	Monodelphis_domestica
ENSG00000122435	TRMT13	96	50.972	ENSMALG00000020965	trmt13	97	50.972	Monopterus_albus
ENSG00000122435	TRMT13	99	87.037	MGP_CAROLIEiJ_G0025568	Trmt13	99	86.164	Mus_caroli
ENSG00000122435	TRMT13	99	86.164	ENSMUSG00000033439	Trmt13	99	86.164	Mus_musculus
ENSG00000122435	TRMT13	99	87.002	MGP_PahariEiJ_G0027014	Trmt13	99	87.002	Mus_pahari
ENSG00000122435	TRMT13	99	86.164	MGP_SPRETEiJ_G0026518	Trmt13	99	86.164	Mus_spretus
ENSG00000122435	TRMT13	79	89.239	ENSMPUG00000002078	-	100	89.239	Mustela_putorius_furo
ENSG00000122435	TRMT13	100	88.073	ENSMPUG00000012169	-	98	87.970	Mustela_putorius_furo
ENSG00000122435	TRMT13	100	88.991	ENSMLUG00000002124	TRMT13	100	79.626	Myotis_lucifugus
ENSG00000122435	TRMT13	96	48.729	ENSNBRG00000006783	trmt13	95	50.000	Neolamprologus_brichardi
ENSG00000122435	TRMT13	100	99.168	ENSNLEG00000035917	TRMT13	100	100.000	Nomascus_leucogenys
ENSG00000122435	TRMT13	97	67.836	ENSMEUG00000013346	-	100	73.387	Notamacropus_eugenii
ENSG00000122435	TRMT13	100	86.239	ENSOPRG00000012048	TRMT13	67	89.706	Ochotona_princeps
ENSG00000122435	TRMT13	100	88.991	ENSODEG00000006075	-	99	86.782	Octodon_degus
ENSG00000122435	TRMT13	96	53.390	ENSONIG00000004574	trmt13	99	53.390	Oreochromis_niloticus
ENSG00000122435	TRMT13	89	74.478	ENSOANG00000012057	TRMT13	99	74.478	Ornithorhynchus_anatinus
ENSG00000122435	TRMT13	100	91.476	ENSOCUG00000023095	TRMT13	100	91.476	Oryctolagus_cuniculus
ENSG00000122435	TRMT13	96	48.729	ENSORLG00000003320	trmt13	99	48.729	Oryzias_latipes
ENSG00000122435	TRMT13	95	48.394	ENSORLG00020005972	trmt13	97	48.637	Oryzias_latipes_hni
ENSG00000122435	TRMT13	96	54.286	ENSORLG00015002270	trmt13	99	52.654	Oryzias_latipes_hsok
ENSG00000122435	TRMT13	96	54.286	ENSOMEG00000006724	trmt13	95	52.008	Oryzias_melastigma
ENSG00000122435	TRMT13	98	92.178	ENSOGAG00000005618	TRMT13	97	91.684	Otolemur_garnettii
ENSG00000122435	TRMT13	100	90.852	ENSOARG00000017983	TRMT13	100	90.852	Ovis_aries
ENSG00000122435	TRMT13	100	100.000	ENSPPAG00000043736	TRMT13	100	100.000	Pan_paniscus
ENSG00000122435	TRMT13	100	96.154	ENSPPRG00000003424	TRMT13	100	96.154	Panthera_pardus
ENSG00000122435	TRMT13	100	96.154	ENSPTIG00000018598	TRMT13	100	96.154	Panthera_tigris_altaica
ENSG00000122435	TRMT13	100	100.000	ENSPTRG00000001001	TRMT13	100	100.000	Pan_troglodytes
ENSG00000122435	TRMT13	100	98.337	ENSPANG00000007598	TRMT13	100	98.337	Papio_anubis
ENSG00000122435	TRMT13	96	56.739	ENSPKIG00000001514	trmt13	98	56.739	Paramormyrops_kingsleyae
ENSG00000122435	TRMT13	98	66.434	ENSPSIG00000012703	TRMT13	99	68.825	Pelodiscus_sinensis
ENSG00000122435	TRMT13	96	54.478	ENSPMGG00000013298	trmt13	94	51.606	Periophthalmus_magnuspinnatus
ENSG00000122435	TRMT13	99	83.125	ENSPEMG00000000275	Trmt13	99	83.125	Peromyscus_maniculatus_bairdii
ENSG00000122435	TRMT13	94	48.951	ENSPMAG00000000823	trmt13	97	45.816	Petromyzon_marinus
ENSG00000122435	TRMT13	99	76.091	ENSPCIG00000007699	TRMT13	99	76.715	Phascolarctos_cinereus
ENSG00000122435	TRMT13	98	51.402	ENSPFOG00000008675	trmt13	99	49.375	Poecilia_formosa
ENSG00000122435	TRMT13	96	49.286	ENSPLAG00000009709	trmt13	99	49.469	Poecilia_latipinna
ENSG00000122435	TRMT13	96	48.571	ENSPMEG00000022954	trmt13	99	47.660	Poecilia_mexicana
ENSG00000122435	TRMT13	96	48.837	ENSPREG00000005645	trmt13	91	50.719	Poecilia_reticulata
ENSG00000122435	TRMT13	100	98.545	ENSPPYG00000001120	TRMT13	100	98.545	Pongo_abelii
ENSG00000122435	TRMT13	100	88.358	ENSPCAG00000002340	TRMT13	100	88.358	Procavia_capensis
ENSG00000122435	TRMT13	100	92.931	ENSPCOG00000017984	TRMT13	100	92.931	Propithecus_coquereli
ENSG00000122435	TRMT13	100	91.892	ENSPVAG00000017430	TRMT13	100	91.892	Pteropus_vampyrus
ENSG00000122435	TRMT13	96	51.907	ENSPNYG00000013690	trmt13	99	51.907	Pundamilia_nyererei
ENSG00000122435	TRMT13	94	64.078	ENSPNAG00000022130	trmt13	99	55.603	Pygocentrus_nattereri
ENSG00000122435	TRMT13	99	85.954	ENSRNOG00000015140	Trmt13	96	85.954	Rattus_norvegicus
ENSG00000122435	TRMT13	100	98.545	ENSRBIG00000037686	TRMT13	100	98.545	Rhinopithecus_bieti
ENSG00000122435	TRMT13	100	98.545	ENSRROG00000044057	TRMT13	100	98.545	Rhinopithecus_roxellana
ENSG00000122435	TRMT13	100	97.248	ENSSBOG00000026541	TRMT13	100	98.165	Saimiri_boliviensis_boliviensis
ENSG00000122435	TRMT13	91	77.574	ENSSHAG00000005213	TRMT13	97	77.574	Sarcophilus_harrisii
ENSG00000122435	TRMT13	96	56.835	ENSSFOG00015017560	trmt13	98	54.839	Scleropages_formosus
ENSG00000122435	TRMT13	88	61.458	ENSSMAG00000014592	trmt13	97	51.153	Scophthalmus_maximus
ENSG00000122435	TRMT13	99	55.046	ENSSDUG00000015508	trmt13	99	50.303	Seriola_dumerili
ENSG00000122435	TRMT13	99	55.046	ENSSLDG00000019060	trmt13	98	50.308	Seriola_lalandi_dorsalis
ENSG00000122435	TRMT13	85	90.323	ENSSARG00000010344	TRMT13	97	77.273	Sorex_araneus
ENSG00000122435	TRMT13	96	67.387	ENSSPUG00000016339	TRMT13	100	67.387	Sphenodon_punctatus
ENSG00000122435	TRMT13	95	52.043	ENSSPAG00000011922	trmt13	98	52.128	Stegastes_partitus
ENSG00000122435	TRMT13	100	91.268	ENSSSCG00000006869	TRMT13	100	91.268	Sus_scrofa
ENSG00000122435	TRMT13	97	66.026	ENSTGUG00000005253	TRMT13	100	66.026	Taeniopygia_guttata
ENSG00000122435	TRMT13	95	49.356	ENSTRUG00000008400	trmt13	99	49.367	Takifugu_rubripes
ENSG00000122435	TRMT13	86	75.721	ENSTBEG00000008911	TRMT13	100	75.721	Tupaia_belangeri
ENSG00000122435	TRMT13	70	98.684	ENSTTRG00000015302	-	60	98.684	Tursiops_truncatus
ENSG00000122435	TRMT13	99	88.889	ENSUAMG00000017251	TRMT13	100	85.031	Ursus_americanus
ENSG00000122435	TRMT13	100	90.229	ENSUMAG00000007901	TRMT13	100	90.229	Ursus_maritimus
ENSG00000122435	TRMT13	90	73.611	ENSVPAG00000001034	TRMT13	100	73.611	Vicugna_pacos
ENSG00000122435	TRMT13	99	91.476	ENSVVUG00000021996	TRMT13	99	91.476	Vulpes_vulpes
ENSG00000122435	TRMT13	96	56.115	ENSXETG00000013204	trmt13	96	56.371	Xenopus_tropicalis
ENSG00000122435	TRMT13	87	56.250	ENSXCOG00000008120	-	88	56.250	Xiphophorus_couchianus
ENSG00000122435	TRMT13	96	49.286	ENSXMAG00000010765	trmt13	99	48.517	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0008175	tRNA methyltransferase activity	21873635.	IBA	Function
GO:0030488	tRNA methylation	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0106050	tRNA 2'-O-methyltransferase activity	-	IEA	Function