EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000122965 (Gene tree)
Gene ID
9904
Gene Symbol
RBM19
Alias
DKFZp586F1023|KIAA0682|Mrd1
Full Name
RNA binding motif protein 19
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
149,634 bases
Position
chr12:113,816,738-113,966,371
Accession
29098
RBP type
canonical RBP
Summary
This gene encodes a nucleolar protein that contains six RNA-binding motifs. The encoded protein may be involved in regulating ribosome biogenesis. Multiple alternatively spliced variants, encoding the same protein, have been identified.[provided by RefSeq, Apr 2009]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000261741RRM_1PF00076.221e-8915
ENSP00000261741RRM_1PF00076.221e-8925
ENSP00000261741RRM_1PF00076.221e-8935
ENSP00000261741RRM_1PF00076.221e-8945
ENSP00000261741RRM_1PF00076.221e-8955
ENSP00000376344RRM_1PF00076.221e-8915
ENSP00000376344RRM_1PF00076.221e-8925
ENSP00000376344RRM_1PF00076.221e-8935
ENSP00000376344RRM_1PF00076.221e-8945
ENSP00000376344RRM_1PF00076.221e-8955
ENSP00000442053RRM_1PF00076.221e-8915
ENSP00000442053RRM_1PF00076.221e-8925
ENSP00000442053RRM_1PF00076.221e-8935
ENSP00000442053RRM_1PF00076.221e-8945
ENSP00000442053RRM_1PF00076.221e-8955
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
19087264RBM19 is essential for preimplantation development in the mouse.BMC Dev Biol2008 Dec 16Zhang Jdoi: 10.1186/1471-213X-8-115.
30535233Inhibition of Skp1-Cullin-F-box complexes during bovine oocyte maturation and preimplantation development leads to delayed development of embryos.Biol Reprod2019 Apr 1Kinterova Vdoi: 10.1093/biolre/ioy254.
22984444Evolutionary conservation of the ribosomal biogenesis factor Rbm19/Mrd1: implications for function.PLoS One2012Kallberg Ydoi: 10.1371/journal.pone.0043786
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000261741RBM19-2014194-ENSP00000261741960 (aa)-Q9Y4C8
ENST00000546876RBM19-204604--- (aa)--
ENST00000392561RBM19-2023574XM_017020281ENSP00000376344960 (aa)XP_016875770Q9Y4C8
ENST00000552384RBM19-205588-ENSP00000449604110 (aa)-H0YIL2
ENST00000552386RBM19-206692--- (aa)--
ENST00000553232RBM19-2071265--- (aa)--
ENST00000545145RBM19-2034422XM_017020280ENSP00000442053960 (aa)XP_016875769Q9Y4C8
Gene Model
Click here to download ENSG00000122965's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000122965Body Weight7.78634640983911E-717903300
ENSG00000122965Insulin3.93949200834243E-517903298
ENSG00000122965Platelet Function Tests2.0713700E-005-
ENSG00000122965Amyotrophic lateral sclerosis 16E-624529757
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000122965rs378245512113921460?Amyotrophic lateral sclerosis (sporadic)24529757EFO_0001357
ENSG00000122965rs14383878112113940539?Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes28736931unit increase0.061GO_1903491|EFO_0001360|EFO_0007806|GO_1901557
ENSG00000122965rs796525312113859837TGeneral risk tolerance (MTAG)30643258[0.0056-0.0104] unit increase0.008EFO_0008579
ENSG00000122965rs395531112113906013TChronotype306968231.026341EFO_0008328
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000122965's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000122965RBM198574.737ENSAPOG00000010507rbm199958.574Acanthochromis_polyacanthus
ENSG00000122965RBM199892.593ENSAMEG00000008544RBM1910083.385Ailuropoda_melanoleuca
ENSG00000122965RBM196884.000ENSACIG00000017780rbm199958.439Amphilophus_citrinellus
ENSG00000122965RBM198574.737ENSAOCG00000008554rbm199959.213Amphiprion_ocellaris
ENSG00000122965RBM199758.947ENSAPEG00000022381rbm199658.519Amphiprion_percula
ENSG00000122965RBM199074.000ENSATEG00000007000rbm199957.900Anabas_testudineus
ENSG00000122965RBM199263.474ENSAPLG00000015319RBM199963.707Anas_platyrhynchos
ENSG00000122965RBM199579.439ENSACAG00000005065RBM199966.190Anolis_carolinensis
ENSG00000122965RBM1998100.000ENSANAG00000024136RBM1910095.000Aotus_nancymaae
ENSG00000122965RBM198575.789ENSACLG00000001399rbm199955.328Astatotilapia_calliptera
ENSG00000122965RBM199071.000ENSAMXG00000017073rbm199953.534Astyanax_mexicanus
ENSG00000122965RBM199891.667ENSBTAG00000031824RBM1910083.814Bos_taurus
ENSG00000122965RBM199250.485WBGene00004315rbd-110043.687Caenorhabditis_elegans
ENSG00000122965RBM1998100.000ENSCJAG00000009798RBM1910094.792Callithrix_jacchus
ENSG00000122965RBM199895.370ENSCAFG00000009146RBM199984.424Canis_familiaris
ENSG00000122965RBM199895.370ENSCAFG00020017862RBM199984.528Canis_lupus_dingo
ENSG00000122965RBM199891.667ENSCHIG00000014917RBM1910083.764Capra_hircus
ENSG00000122965RBM198986.698ENSTSYG00000007207RBM199686.565Carlito_syrichta
ENSG00000122965RBM199887.963ENSCAPG00000006869RBM199980.084Cavia_aperea
ENSG00000122965RBM199887.963ENSCPOG00000026629RBM1910081.451Cavia_porcellus
ENSG00000122965RBM199897.222ENSCCAG00000021665-10095.104Cebus_capucinus
ENSG00000122965RBM198485.802ENSCCAG00000026637-9985.802Cebus_capucinus
ENSG00000122965RBM1998100.000ENSCATG00000035841RBM1910096.730Cercocebus_atys
ENSG00000122965RBM199891.667ENSCLAG00000009965RBM1910082.389Chinchilla_lanigera
ENSG00000122965RBM1998100.000ENSCSAG00000002352RBM199692.522Chlorocebus_sabaeus
ENSG00000122965RBM198586.316ENSCPBG00000011990RBM199969.887Chrysemys_picta_bellii
ENSG00000122965RBM196568.421ENSCING00000023076-9749.464Ciona_intestinalis
ENSG00000122965RBM1998100.000ENSCANG00000035927RBM1910097.292Colobus_angolensis_palliatus
ENSG00000122965RBM199887.156ENSCGRG00001000323Rbm1910081.198Cricetulus_griseus_chok1gshd
ENSG00000122965RBM199887.156ENSCGRG00000010371Rbm1910081.198Cricetulus_griseus_crigri
ENSG00000122965RBM199372.816ENSCSEG00000017436rbm199562.985Cynoglossus_semilaevis
ENSG00000122965RBM199067.961ENSCVAG00000000300rbm1910057.261Cyprinodon_variegatus
ENSG00000122965RBM199275.490ENSDARG00000042590rbm1910059.259Danio_rerio
ENSG00000122965RBM199391.176ENSDNOG00000024534RBM199682.845Dasypus_novemcinctus
ENSG00000122965RBM199778.349ENSDORG00000008549Rbm1910078.266Dipodomys_ordii
ENSG00000122965RBM197057.500FBgn0036018CG33359638.006Drosophila_melanogaster
ENSG00000122965RBM199886.111ENSETEG00000016887-5995.652Echinops_telfairi
ENSG00000122965RBM199164.356ENSEBUG00000010776-9759.494Eptatretus_burgeri
ENSG00000122965RBM198047.649ENSEBUG00000008521-9447.607Eptatretus_burgeri
ENSG00000122965RBM199894.444ENSEASG00005009452RBM1910087.435Equus_asinus_asinus
ENSG00000122965RBM199894.444ENSECAG00000023716RBM1910087.747Equus_caballus
ENSG00000122965RBM199074.038ENSELUG00000012561rbm1910058.539Esox_lucius
ENSG00000122965RBM199889.815ENSFCAG00000002962RBM199983.680Felis_catus
ENSG00000122965RBM199866.491ENSFALG00000007768RBM199965.258Ficedula_albicollis
ENSG00000122965RBM199888.889ENSFDAG00000004629RBM1910081.481Fukomys_damarensis
ENSG00000122965RBM199957.629ENSFHEG00000012578rbm199957.350Fundulus_heteroclitus
ENSG00000122965RBM199755.911ENSGMOG00000013120rbm1910055.096Gadus_morhua
ENSG00000122965RBM199767.296ENSGALG00000008289RBM199967.523Gallus_gallus
ENSG00000122965RBM199957.780ENSGAFG00000012337rbm199957.917Gambusia_affinis
ENSG00000122965RBM198571.579ENSGACG00000009462rbm1910056.681Gasterosteus_aculeatus
ENSG00000122965RBM199379.612ENSGAGG00000019457RBM199973.289Gopherus_agassizii
ENSG00000122965RBM1910098.854ENSGGOG00000007371RBM1910098.854Gorilla_gorilla
ENSG00000122965RBM198675.000ENSHBUG00000009047rbm199957.660Haplochromis_burtoni
ENSG00000122965RBM199890.741ENSHGLG00000010899RBM1910081.470Heterocephalus_glaber_female
ENSG00000122965RBM199890.741ENSHGLG00100017936RBM1910081.988Heterocephalus_glaber_male
ENSG00000122965RBM198574.737ENSHCOG00000016446rbm199958.299Hippocampus_comes
ENSG00000122965RBM199072.000ENSIPUG00000023849rbm199957.305Ictalurus_punctatus
ENSG00000122965RBM198573.684ENSKMAG00000014807rbm199959.979Kryptolebias_marmoratus
ENSG00000122965RBM198574.737ENSLBEG00000012897rbm199957.469Labrus_bergylta
ENSG00000122965RBM197260.518ENSLACG00000012030RBM1910059.342Latimeria_chalumnae
ENSG00000122965RBM199175.248ENSLOCG00000008341rbm199960.225Lepisosteus_oculatus
ENSG00000122965RBM198984.624ENSLAFG00000004187RBM1910084.624Loxodonta_africana
ENSG00000122965RBM1998100.000ENSMFAG00000046091RBM199696.875Macaca_fascicularis
ENSG00000122965RBM1998100.000ENSMMUG00000010496RBM1910096.771Macaca_mulatta
ENSG00000122965RBM1910089.896ENSMNEG00000028452RBM199995.952Macaca_nemestrina
ENSG00000122965RBM199897.273ENSMLEG00000034550RBM1910093.588Mandrillus_leucophaeus
ENSG00000122965RBM198574.737ENSMAMG00000014397rbm199958.727Mastacembelus_armatus
ENSG00000122965RBM198575.789ENSMZEG00005016607rbm199959.278Maylandia_zebra
ENSG00000122965RBM197585.542ENSMGAG00000010087RBM1910056.303Meleagris_gallopavo
ENSG00000122965RBM1910081.884ENSMAUG00000019290Rbm1910081.677Mesocricetus_auratus
ENSG00000122965RBM199894.444ENSMICG00000014423RBM1910088.565Microcebus_murinus
ENSG00000122965RBM198972.449ENSMMOG00000017839rbm199955.328Mola_mola
ENSG00000122965RBM198591.489ENSMODG00000003597RBM199974.086Monodelphis_domestica
ENSG00000122965RBM198573.684ENSMALG00000012647rbm199957.846Monopterus_albus
ENSG00000122965RBM199885.185MGP_CAROLIEiJ_G0027656Rbm1910081.405Mus_caroli
ENSG00000122965RBM199885.185ENSMUSG00000029594Rbm1910080.765Mus_musculus
ENSG00000122965RBM199885.185MGP_PahariEiJ_G0024238Rbm1910081.696Mus_pahari
ENSG00000122965RBM199885.185MGP_SPRETEiJ_G0028656Rbm1910080.682Mus_spretus
ENSG00000122965RBM199893.519ENSMPUG00000002694RBM199983.420Mustela_putorius_furo
ENSG00000122965RBM199895.370ENSMLUG00000015075RBM1910086.228Myotis_lucifugus
ENSG00000122965RBM199687.736ENSNGAG00000009076Rbm199982.694Nannospalax_galili
ENSG00000122965RBM198574.468ENSNBRG00000005913rbm199959.129Neolamprologus_brichardi
ENSG00000122965RBM1998100.000ENSNLEG00000000190RBM1910097.812Nomascus_leucogenys
ENSG00000122965RBM199585.849ENSMEUG00000004045RBM199966.006Notamacropus_eugenii
ENSG00000122965RBM199891.667ENSOPRG00000012064RBM1910083.316Ochotona_princeps
ENSG00000122965RBM199891.667ENSODEG00000012977RBM1910077.847Octodon_degus
ENSG00000122965RBM198575.789ENSONIG00000013576rbm199960.400Oreochromis_niloticus
ENSG00000122965RBM199891.667ENSOCUG00000009398RBM1910080.538Oryctolagus_cuniculus
ENSG00000122965RBM198574.737ENSORLG00000008077rbm199958.632Oryzias_latipes
ENSG00000122965RBM198574.737ENSORLG00020013187rbm199958.368Oryzias_latipes_hni
ENSG00000122965RBM198574.737ENSORLG00015001774rbm199958.084Oryzias_latipes_hsok
ENSG00000122965RBM198574.737ENSOMEG00000003334rbm199958.945Oryzias_melastigma
ENSG00000122965RBM198987.836ENSOGAG00000000602RBM1910087.836Otolemur_garnettii
ENSG00000122965RBM199893.519ENSOARG00000006827RBM1910084.472Ovis_aries
ENSG00000122965RBM1910099.272ENSPPAG00000043712RBM1910099.272Pan_paniscus
ENSG00000122965RBM199889.815ENSPPRG00000023027RBM199983.368Panthera_pardus
ENSG00000122965RBM199889.815ENSPTIG00000011096RBM1910075.851Panthera_tigris_altaica
ENSG00000122965RBM1910099.168ENSPTRG00000005494RBM1910099.168Pan_troglodytes
ENSG00000122965RBM1998100.000ENSPANG00000004795RBM199696.891Papio_anubis
ENSG00000122965RBM199277.451ENSPKIG00000017095rbm1910057.613Paramormyrops_kingsleyae
ENSG00000122965RBM198867.241ENSPSIG00000008191RBM199967.011Pelodiscus_sinensis
ENSG00000122965RBM196882.667ENSPMGG00000019087rbm1910058.806Periophthalmus_magnuspinnatus
ENSG00000122965RBM199886.239ENSPEMG00000018058Rbm1910080.435Peromyscus_maniculatus_bairdii
ENSG00000122965RBM199387.379ENSPCIG00000028861RBM1910074.818Phascolarctos_cinereus
ENSG00000122965RBM199957.911ENSPFOG00000015300rbm199957.632Poecilia_formosa
ENSG00000122965RBM199958.075ENSPLAG00000000059rbm199958.333Poecilia_latipinna
ENSG00000122965RBM199958.178ENSPMEG00000018585rbm199761.765Poecilia_mexicana
ENSG00000122965RBM199958.506ENSPREG00000000978rbm199958.854Poecilia_reticulata
ENSG00000122965RBM199898.148ENSPPYG00000004993RBM1910094.792Pongo_abelii
ENSG00000122965RBM199891.667ENSPCAG00000005063-6380.370Procavia_capensis
ENSG00000122965RBM199896.296ENSPCOG00000016190RBM1910088.554Propithecus_coquereli
ENSG00000122965RBM199891.667ENSPVAG00000011618RBM199983.540Pteropus_vampyrus
ENSG00000122965RBM198575.789ENSPNYG00000017434rbm199958.342Pundamilia_nyererei
ENSG00000122965RBM199070.000ENSPNAG00000012069rbm1910058.273Pygocentrus_nattereri
ENSG00000122965RBM199889.908ENSRNOG00000001397Rbm1910081.508Rattus_norvegicus
ENSG00000122965RBM1998100.000ENSRBIG00000041419RBM1910095.208Rhinopithecus_bieti
ENSG00000122965RBM1998100.000ENSRROG00000031938RBM1910096.875Rhinopithecus_roxellana
ENSG00000122965RBM197039.038YPR112C-8138.359Saccharomyces_cerevisiae
ENSG00000122965RBM198883.175ENSSBOG00000022679-9981.776Saimiri_boliviensis_boliviensis
ENSG00000122965RBM199899.074ENSSBOG00000021434-10092.188Saimiri_boliviensis_boliviensis
ENSG00000122965RBM199386.408ENSSHAG00000012256RBM1910073.954Sarcophilus_harrisii
ENSG00000122965RBM198572.340ENSSFOG00015005124rbm199856.450Scleropages_formosus
ENSG00000122965RBM199072.549ENSSMAG00000011828rbm1910059.426Scophthalmus_maximus
ENSG00000122965RBM198574.737ENSSDUG00000013544rbm199959.133Seriola_dumerili
ENSG00000122965RBM199370.874ENSSLDG00000025413rbm1910055.763Seriola_lalandi_dorsalis
ENSG00000122965RBM196989.474ENSSPUG00000011064RBM199870.698Sphenodon_punctatus
ENSG00000122965RBM199758.263ENSSPAG00000018685rbm199858.051Stegastes_partitus
ENSG00000122965RBM199894.444ENSSSCG00000009868RBM1910085.670Sus_scrofa
ENSG00000122965RBM199479.612ENSTGUG00000009017RBM1910067.708Taeniopygia_guttata
ENSG00000122965RBM198572.632ENSTRUG00000016032rbm199957.480Takifugu_rubripes
ENSG00000122965RBM195268.224ENSTNIG00000015903rbm199868.224Tetraodon_nigroviridis
ENSG00000122965RBM197786.275ENSTBEG00000000703RBM198086.275Tupaia_belangeri
ENSG00000122965RBM199789.720ENSTTRG00000003987RBM198584.665Tursiops_truncatus
ENSG00000122965RBM199893.519ENSUAMG00000002076RBM199985.684Ursus_americanus
ENSG00000122965RBM199985.519ENSUMAG00000010816RBM1910085.519Ursus_maritimus
ENSG00000122965RBM199895.370ENSVVUG00000007886RBM199984.320Vulpes_vulpes
ENSG00000122965RBM199170.588ENSXETG00000017668rbm199960.748Xenopus_tropicalis
ENSG00000122965RBM199957.541ENSXCOG00000016995rbm199957.275Xiphophorus_couchianus
ENSG00000122965RBM199958.428ENSXMAG00000007641rbm199957.856Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-ISSComponent
GO:0005694chromosome-IEAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus16027046.IDAComponent
GO:0005730nucleolus-ISSComponent
GO:0005737cytoplasm-ISSComponent
GO:0007275multicellular organism development-IEAProcess
GO:0016020membrane19946888.HDAComponent
GO:0016607nuclear speck21873635.IBAComponent
GO:0040019positive regulation of embryonic development-ISSProcess
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess

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