EuRBPDB

Description

RBPome

Literatures

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSG00000124333 (Gene tree)
Gene ID: 6845
Gene Symbol: VAMP7
Alias: VAMP-7|TI-VAMP|SYBL1
Full Name: vesicle associated membrane protein 7
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 62,490 bases
Position: chrX:155,881,280-155,943,769
Accession: 11486
RBP type: non-canonical RBP
Summary: This gene encodes a transmembrane protein that is a member of the soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) family. The encoded protein localizes to late endosomes and lysosomes and is involved in the fusion of transport vesicles to their target membranes. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Jun 2010]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
17133344	Multiple binding of methyl-CpG and polycomb proteins in long-term gene silencing events.	J Cell Physiol	2007 Mar	Matarazzo MR	-

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000479687	VAMP7-205	742	-	-	- (aa)	-	-
ENST00000286448	VAMP7-202	2646	XM_017029760	ENSP00000286448	220 (aa)	XP_016885249	P51809
ENST00000460621	VAMP7-203	658	-	ENSP00000427822	179 (aa)	-	P51809
ENST00000463317	VAMP7-204	673	-	-	- (aa)	-	-
ENST00000488344	VAMP7-206	696	-	ENSP00000430039	59 (aa)	-	E5RH06
ENST00000262640	VAMP7-201	2496	XM_011531188	ENSP00000262640	260 (aa)	XP_011529490	P51809

Gene Model

Click here to download ENSG00000124333's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa04130	SNARE interactions in vesicular transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000124333's network

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000149	SNARE binding	21873635.	IBA	Function
GO:0005484	SNAP receptor activity	21873635.	IBA	Function
GO:0005515	protein binding	16354670.18775314.26359495.	IPI	Function
GO:0005737	cytoplasm	18253931.	IDA	Component
GO:0005765	lysosomal membrane	17897319.	HDA	Component
GO:0005765	lysosomal membrane	10459012.	ISS	Component
GO:0005765	lysosomal membrane	-	TAS	Component
GO:0005789	endoplasmic reticulum membrane	16495485.	ISS	Component
GO:0005802	trans-Golgi network	19745841.	IDA	Component
GO:0005886	plasma membrane	18253931.	IDA	Component
GO:0005886	plasma membrane	-	TAS	Component
GO:0006887	exocytosis	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	16495485.	ISS	Process
GO:0006892	post-Golgi vesicle-mediated transport	-	TAS	Process
GO:0006906	vesicle fusion	21873635.	IBA	Process
GO:0006906	vesicle fusion	10888671.	IDA	Process
GO:0006911	phagocytosis, engulfment	15133481.	ISS	Process
GO:0008333	endosome to lysosome transport	21873635.	IBA	Process
GO:0008333	endosome to lysosome transport	10888671.	IDA	Process
GO:0009986	cell surface	-	IEA	Component
GO:0016020	membrane	16677249.	IDA	Component
GO:0016192	vesicle-mediated transport	10888671.	IDA	Process
GO:0017156	calcium ion regulated exocytosis	14993220.	ISS	Process
GO:0019905	syntaxin binding	-	IEA	Function
GO:0030027	lamellipodium	22589474.	IDA	Component
GO:0030054	cell junction	-	IEA	Component
GO:0030141	secretory granule	18042464.	IDA	Component
GO:0030285	integral component of synaptic vesicle membrane	-	IEA	Component
GO:0030665	clathrin-coated vesicle membrane	-	TAS	Component
GO:0030667	secretory granule membrane	16677249.	IDA	Component
GO:0030670	phagocytic vesicle membrane	-	IEA	Component
GO:0031091	platelet alpha granule	22589474.	IDA	Component
GO:0031143	pseudopodium	22589474.	IDA	Component
GO:0031201	SNARE complex	21873635.	IBA	Component
GO:0031201	SNARE complex	18253931.24550300.	IDA	Component
GO:0031201	SNARE complex	15133481.	ISS	Component
GO:0031902	late endosome membrane	10459012.	ISS	Component
GO:0034197	triglyceride transport	-	IEA	Process
GO:0035493	SNARE complex assembly	-	IEA	Process
GO:0035577	azurophil granule membrane	16677249.	IDA	Component
GO:0043001	Golgi to plasma membrane protein transport	-	IEA	Process
GO:0043005	neuron projection	-	ISS	Component
GO:0043231	intracellular membrane-bounded organelle	-	IDA	Component
GO:0043308	eosinophil degranulation	16677249.	IMP	Process
GO:0043308	eosinophil degranulation	14993220.	ISS	Process
GO:0043312	neutrophil degranulation	16677249.	IMP	Process
GO:0043312	neutrophil degranulation	14993220.	ISS	Process
GO:0043320	natural killer cell degranulation	18042464.	IMP	Process
GO:0045177	apical part of cell	-	IEA	Component
GO:0045335	phagocytic vesicle	15470500.	ISS	Component
GO:0047496	vesicle transport along microtubule	-	IEA	Process
GO:0048280	vesicle fusion with Golgi apparatus	-	IEA	Process
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component
GO:0050775	positive regulation of dendrite morphogenesis	-	IEA	Process
GO:0061024	membrane organization	-	TAS	Process
GO:0070062	extracellular exosome	19056867.	HDA	Component
GO:0097352	autophagosome maturation	23217709.	IMP	Process
GO:0098686	hippocampal mossy fiber to CA3 synapse	-	IEA	Component
GO:1900483	regulation of protein targeting to vacuolar membrane	-	IEA	Process
GO:1903595	positive regulation of histamine secretion by mast cell	18253931.	IMP	Process