EuRBPDB

Description

Ensembl ID: ENSG00000124380 (Gene tree)
Gene ID: 11017
Gene Symbol: SNRNP27
Alias: RY1|U4/U6.U5-27K
Full Name: small nuclear ribonucleoprotein U4/U6.U5 subunit 27
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 12,016 bases
Position: chr2:69,893,560-69,905,575
Accession: 30240
RBP type: non-canonical RBP
Summary: This gene encodes a serine/arginine-rich (SR) protein. SR proteins play important roles in pre-mRNA splicing by facilitating the recognition and selection of splice sites. The encoded protein associates with the 25S U4/U6.U5 tri-snRNP, a major component of the U2-type spiceosome. The expression of this gene may be altered in cells infected with the human T-cell lymphotropic virus type 1 (HTLV-1) retrovirus. A pseudogene of this gene is located on the long arm of chromosome 5. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Feb 2011]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000488986	SNRNP27-205	336	-	-	- (aa)	-	-
ENST00000487029	SNRNP27-204	604	-	ENSP00000430449	18 (aa)	-	H0YBW5
ENST00000450162	SNRNP27-203	766	-	ENSP00000395144	155 (aa)	-	Q8WVK2
ENST00000409116	SNRNP27-202	1339	-	ENSP00000386608	158 (aa)	-	B8ZZ98
ENST00000244227	SNRNP27-201	1802	-	ENSP00000244227	155 (aa)	-	Q8WVK2

Gene Model

Pathways

Pathway ID	Pathway Name	Source
hsa03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	TAS	Process
GO:0003676	nucleic acid binding	7931148.	NAS	Function
GO:0005515	protein binding	22365833.23602568.25416956.	IPI	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0008150	biological_process	-	ND	Process