EuRBPDB

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000124541 (Gene tree)
Gene ID: 88745
Gene Symbol: RRP36
Alias: dJ20C7.4|C6orf153
Full Name: ribosomal RNA processing 36
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 12,521 bases
Position: chr6:43,021,636-43,034,156
Accession: 21374
RBP type: canonical RBP
Summary: RRP36 functions at an early stage in the processing of 35S preribosomal RNA into the mature 18S species (Gerus et al., 2010 [PubMed 20038530]).[supplied by OMIM, Jul 2010]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000244496	RRP36	PF06102.12	1.3e-47	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	RIC & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
30320233	Targeted cleavage of nad6 mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria.	Commun Biol	2018 Oct 11	Colas des Francs-Small C	doi: 10.1038/s42003-018-0166-8
22956906	CPSF6 defines a conserved capsid interface that modulates HIV-1 replication.	PLoS Pathog	2012	Price AJ	doi: 10.1371/journal.ppat.1002896

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000244496	RRP36-201	1159	-	ENSP00000244496	259 (aa)	-	Q96EU6
ENST00000607555	RRP36-203	1005	-	-	- (aa)	-	-
ENST00000607394	RRP36-202	528	-	ENSP00000475391	29 (aa)	-	U3KPZ9

Gene Model

Click here to download ENSG00000124541's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000124541's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000124541	RRP36	81	57.346	ENSAPOG00000022015	rrp36	81	54.936	Acanthochromis_polyacanthus
ENSG00000124541	RRP36	83	66.667	ENSACIG00000020578	-	67	51.869	Amphilophus_citrinellus
ENSG00000124541	RRP36	83	62.500	ENSAOCG00000013439	rrp36	70	56.087	Amphiprion_ocellaris
ENSG00000124541	RRP36	83	62.500	ENSAPEG00000020996	rrp36	70	56.087	Amphiprion_percula
ENSG00000124541	RRP36	87	55.066	ENSATEG00000016946	rrp36	66	55.217	Anabas_testudineus
ENSG00000124541	RRP36	100	90.734	ENSANAG00000021773	RRP36	92	93.220	Aotus_nancymaae
ENSG00000124541	RRP36	88	46.256	ENSACLG00000008408	rrp36	94	46.256	Astatotilapia_calliptera
ENSG00000124541	RRP36	79	69.565	ENSACLG00000013982	RRP36	84	47.143	Astatotilapia_calliptera
ENSG00000124541	RRP36	98	82.213	ENSBTAG00000053873	RRP36	93	85.470	Bos_taurus
ENSG00000124541	RRP36	100	88.803	ENSCJAG00000004943	RRP36	93	91.525	Callithrix_jacchus
ENSG00000124541	RRP36	83	95.833	ENSCAFG00020011057	RRP36	92	91.163	Canis_lupus_dingo
ENSG00000124541	RRP36	100	80.843	ENSCHIG00000016354	-	94	85.232	Capra_hircus
ENSG00000124541	RRP36	83	91.667	ENSCHIG00000003210	-	89	89.552	Capra_hircus
ENSG00000124541	RRP36	83	91.667	ENSCHIG00000019781	-	94	66.812	Capra_hircus
ENSG00000124541	RRP36	95	87.805	ENSTSYG00000037176	RRP36	93	88.136	Carlito_syrichta
ENSG00000124541	RRP36	92	79.916	ENSCAPG00000010983	RRP36	91	86.792	Cavia_aperea
ENSG00000124541	RRP36	84	85.714	ENSCPOG00000025932	RRP36	96	85.714	Cavia_porcellus
ENSG00000124541	RRP36	100	91.120	ENSCCAG00000000048	RRP36	92	93.644	Cebus_capucinus
ENSG00000124541	RRP36	91	96.610	ENSCATG00000041903	RRP36	92	96.610	Cercocebus_atys
ENSG00000124541	RRP36	83	100.000	ENSCLAG00000013166	RRP36	96	87.963	Chinchilla_lanigera
ENSG00000124541	RRP36	100	95.367	ENSCSAG00000011553	RRP36	100	95.367	Chlorocebus_sabaeus
ENSG00000124541	RRP36	95	54.183	ENSCPBG00000003555	RRP36	59	58.636	Chrysemys_picta_bellii
ENSG00000124541	RRP36	81	38.426	ENSCING00000012193	-	97	35.200	Ciona_intestinalis
ENSG00000124541	RRP36	75	36.869	ENSCSAVG00000002672	-	85	36.869	Ciona_savignyi
ENSG00000124541	RRP36	100	85.714	ENSCANG00000035127	RRP36	100	85.714	Colobus_angolensis_palliatus
ENSG00000124541	RRP36	83	95.833	ENSCGRG00001021461	Rrp36	94	87.907	Cricetulus_griseus_chok1gshd
ENSG00000124541	RRP36	83	95.833	ENSCGRG00000006286	Rrp36	94	87.907	Cricetulus_griseus_crigri
ENSG00000124541	RRP36	88	53.712	ENSCSEG00000001039	RRP36	73	52.459	Cynoglossus_semilaevis
ENSG00000124541	RRP36	82	47.664	ENSCVAG00000017798	rrp36	93	47.664	Cyprinodon_variegatus
ENSG00000124541	RRP36	89	48.696	ENSDARG00000032516	rrp36	71	48.696	Danio_rerio
ENSG00000124541	RRP36	89	80.952	ENSDORG00000012186	Rrp36	96	80.952	Dipodomys_ordii
ENSG00000124541	RRP36	86	35.043	FBgn0038235	CG8461	92	35.043	Drosophila_melanogaster
ENSG00000124541	RRP36	83	100.000	ENSEASG00005003169	RRP36	99	91.630	Equus_asinus_asinus
ENSG00000124541	RRP36	83	100.000	ENSECAG00000040238	RRP36	99	91.630	Equus_caballus
ENSG00000124541	RRP36	83	87.500	ENSEEUG00000010515	RRP36	91	67.949	Erinaceus_europaeus
ENSG00000124541	RRP36	85	53.182	ENSELUG00000016840	rrp36	61	53.182	Esox_lucius
ENSG00000124541	RRP36	83	100.000	ENSFCAG00000043818	RRP36	92	85.470	Felis_catus
ENSG00000124541	RRP36	83	95.833	ENSFDAG00000010380	RRP36	99	88.785	Fukomys_damarensis
ENSG00000124541	RRP36	63	54.268	ENSFHEG00000000761	rrp36	83	54.268	Fundulus_heteroclitus
ENSG00000124541	RRP36	81	52.133	ENSGAFG00000017817	rrp36	65	48.927	Gambusia_affinis
ENSG00000124541	RRP36	88	53.712	ENSGACG00000019603	RRP36	70	53.712	Gasterosteus_aculeatus
ENSG00000124541	RRP36	100	96.139	ENSGGOG00000037384	RRP36	100	96.139	Gorilla_gorilla
ENSG00000124541	RRP36	83	70.833	ENSHBUG00000008974	RRP36	71	51.073	Haplochromis_burtoni
ENSG00000124541	RRP36	83	95.833	ENSHGLG00000018082	RRP36	85	87.963	Heterocephalus_glaber_female
ENSG00000124541	RRP36	83	95.833	ENSHGLG00100019303	RRP36	85	87.963	Heterocephalus_glaber_male
ENSG00000124541	RRP36	81	37.559	ENSHCOG00000010303	rrp36	80	38.889	Hippocampus_comes
ENSG00000124541	RRP36	81	49.524	ENSIPUG00000016548	rrp36	69	49.524	Ictalurus_punctatus
ENSG00000124541	RRP36	83	100.000	ENSSTOG00000009511	RRP36	99	87.983	Ictidomys_tridecemlineatus
ENSG00000124541	RRP36	85	84.685	ENSJJAG00000023363	Rrp36	99	83.628	Jaculus_jaculus
ENSG00000124541	RRP36	83	66.667	ENSKMAG00000006968	rrp36	65	53.913	Kryptolebias_marmoratus
ENSG00000124541	RRP36	88	46.718	ENSLBEG00000017728	-	69	46.718	Labrus_bergylta
ENSG00000124541	RRP36	76	77.273	ENSLACG00000001888	rrp36	65	55.607	Latimeria_chalumnae
ENSG00000124541	RRP36	88	53.070	ENSLOCG00000015862	RRP36	63	53.070	Lepisosteus_oculatus
ENSG00000124541	RRP36	79	95.652	ENSLAFG00000032704	RRP36	100	88.372	Loxodonta_africana
ENSG00000124541	RRP36	100	96.525	ENSMFAG00000003547	RRP36	100	96.525	Macaca_fascicularis
ENSG00000124541	RRP36	100	96.139	ENSMNEG00000044747	RRP36	100	96.139	Macaca_nemestrina
ENSG00000124541	RRP36	100	96.139	ENSMLEG00000034272	RRP36	100	96.139	Mandrillus_leucophaeus
ENSG00000124541	RRP36	83	55.760	ENSMAMG00000019157	-	63	53.648	Mastacembelus_armatus
ENSG00000124541	RRP36	83	70.833	ENSMZEG00005015204	RRP36	70	51.073	Maylandia_zebra
ENSG00000124541	RRP36	83	95.833	ENSMAUG00000003648	Rrp36	95	86.512	Mesocricetus_auratus
ENSG00000124541	RRP36	98	86.166	ENSMICG00000045230	RRP36	92	89.270	Microcebus_murinus
ENSG00000124541	RRP36	94	78.776	ENSMOCG00000002009	Rrp36	94	81.223	Microtus_ochrogaster
ENSG00000124541	RRP36	88	49.782	ENSMMOG00000018637	-	67	50.000	Mola_mola
ENSG00000124541	RRP36	86	80.000	ENSMODG00000029304	-	82	62.941	Monodelphis_domestica
ENSG00000124541	RRP36	87	51.101	ENSMALG00000008142	-	72	51.515	Monopterus_albus
ENSG00000124541	RRP36	98	79.051	MGP_CAROLIEiJ_G0021680	Rrp36	87	86.977	Mus_caroli
ENSG00000124541	RRP36	92	81.481	ENSMUSG00000023971	Rrp36	100	84.279	Mus_musculus
ENSG00000124541	RRP36	83	88.889	MGP_PahariEiJ_G0020671	Rrp36	94	88.889	Mus_pahari
ENSG00000124541	RRP36	92	80.247	MGP_SPRETEiJ_G0022592	Rrp36	87	86.977	Mus_spretus
ENSG00000124541	RRP36	83	95.833	ENSNGAG00000021177	-	85	80.469	Nannospalax_galili
ENSG00000124541	RRP36	83	100.000	ENSNLEG00000033289	RRP36	100	98.140	Nomascus_leucogenys
ENSG00000124541	RRP36	61	70.701	ENSMEUG00000007149	-	96	70.701	Notamacropus_eugenii
ENSG00000124541	RRP36	83	91.667	ENSOPRG00000002274	RRP36	81	87.374	Ochotona_princeps
ENSG00000124541	RRP36	83	91.667	ENSODEG00000015915	RRP36	96	83.562	Octodon_degus
ENSG00000124541	RRP36	83	70.833	ENSONIG00000015983	rrp36	73	52.361	Oreochromis_niloticus
ENSG00000124541	RRP36	83	52.778	ENSORLG00000029500	rrp36	67	51.709	Oryzias_latipes
ENSG00000124541	RRP36	83	53.704	ENSORLG00020017452	-	68	52.155	Oryzias_latipes_hni
ENSG00000124541	RRP36	83	53.704	ENSORLG00015016898	rrp36	67	52.155	Oryzias_latipes_hsok
ENSG00000124541	RRP36	87	52.655	ENSOMEG00000008623	RRP36	69	52.155	Oryzias_melastigma
ENSG00000124541	RRP36	83	95.833	ENSOGAG00000012699	RRP36	100	87.391	Otolemur_garnettii
ENSG00000124541	RRP36	97	75.889	ENSPPAG00000042831	-	94	81.624	Pan_paniscus
ENSG00000124541	RRP36	83	100.000	ENSPPRG00000014610	RRP36	92	87.179	Panthera_pardus
ENSG00000124541	RRP36	83	100.000	ENSPTIG00000010853	RRP36	92	87.179	Panthera_tigris_altaica
ENSG00000124541	RRP36	100	98.842	ENSPTRG00000018184	RRP36	100	98.842	Pan_troglodytes
ENSG00000124541	RRP36	100	96.525	ENSPANG00000025140	RRP36	100	96.525	Papio_anubis
ENSG00000124541	RRP36	84	53.917	ENSPKIG00000004303	rrp36	63	53.917	Paramormyrops_kingsleyae
ENSG00000124541	RRP36	81	49.765	ENSPMGG00000016870	rrp36	65	50.704	Periophthalmus_magnuspinnatus
ENSG00000124541	RRP36	83	95.833	ENSPEMG00000007015	Rrp36	94	87.442	Peromyscus_maniculatus_bairdii
ENSG00000124541	RRP36	100	66.794	ENSPCIG00000009179	RRP36	91	71.186	Phascolarctos_cinereus
ENSG00000124541	RRP36	88	50.877	ENSPFOG00000011959	rrp36	58	50.435	Poecilia_formosa
ENSG00000124541	RRP36	88	50.439	ENSPLAG00000023901	rrp36	63	50.220	Poecilia_latipinna
ENSG00000124541	RRP36	88	50.877	ENSPMEG00000024099	rrp36	62	50.661	Poecilia_mexicana
ENSG00000124541	RRP36	88	49.561	ENSPREG00000022787	rrp36	63	49.561	Poecilia_reticulata
ENSG00000124541	RRP36	83	100.000	ENSPPYG00000016628	RRP36	100	91.120	Pongo_abelii
ENSG00000124541	RRP36	96	84.337	ENSPCOG00000018401	RRP36	92	86.522	Propithecus_coquereli
ENSG00000124541	RRP36	100	81.467	ENSPVAG00000008714	RRP36	94	87.234	Pteropus_vampyrus
ENSG00000124541	RRP36	83	70.833	ENSPNYG00000018030	RRP36	71	51.073	Pundamilia_nyererei
ENSG00000124541	RRP36	88	51.528	ENSPNAG00000027207	rrp36	63	51.528	Pygocentrus_nattereri
ENSG00000124541	RRP36	83	95.833	ENSRNOG00000017836	Rrp36	87	88.372	Rattus_norvegicus
ENSG00000124541	RRP36	100	95.367	ENSRBIG00000040019	RRP36	100	94.981	Rhinopithecus_bieti
ENSG00000124541	RRP36	100	94.981	ENSRROG00000040721	RRP36	100	94.595	Rhinopithecus_roxellana
ENSG00000124541	RRP36	62	31.977	YOR287C	-	56	32.164	Saccharomyces_cerevisiae
ENSG00000124541	RRP36	100	85.328	ENSSBOG00000030228	RRP36	94	90.254	Saimiri_boliviensis_boliviensis
ENSG00000124541	RRP36	84	50.459	ENSSFOG00015023058	rrp36	64	50.459	Scleropages_formosus
ENSG00000124541	RRP36	88	55.263	ENSSMAG00000020911	-	61	55.263	Scophthalmus_maximus
ENSG00000124541	RRP36	83	62.500	ENSSDUG00000018924	rrp36	62	55.066	Seriola_dumerili
ENSG00000124541	RRP36	83	62.500	ENSSLDG00000019741	RRP36	96	56.938	Seriola_lalandi_dorsalis
ENSG00000124541	RRP36	83	85.116	ENSSARG00000000873	RRP36	99	85.116	Sorex_araneus
ENSG00000124541	RRP36	85	59.545	ENSSPUG00000000213	RRP36	60	59.545	Sphenodon_punctatus
ENSG00000124541	RRP36	83	66.667	ENSSPAG00000017154	rrp36	79	48.291	Stegastes_partitus
ENSG00000124541	RRP36	100	83.784	ENSSSCG00000001656	RRP36	91	88.559	Sus_scrofa
ENSG00000124541	RRP36	92	62.343	ENSSSCG00000037862	-	91	65.438	Sus_scrofa
ENSG00000124541	RRP36	95	45.783	ENSTRUG00000021893	rrp36	69	48.035	Takifugu_rubripes
ENSG00000124541	RRP36	96	48.810	ENSTNIG00000004741	rrp36	87	49.569	Tetraodon_nigroviridis
ENSG00000124541	RRP36	83	79.535	ENSTBEG00000012326	RRP36	100	79.535	Tupaia_belangeri
ENSG00000124541	RRP36	100	79.151	ENSTTRG00000007001	RRP36	92	86.207	Tursiops_truncatus
ENSG00000124541	RRP36	98	81.818	ENSUAMG00000015865	RRP36	90	87.838	Ursus_americanus
ENSG00000124541	RRP36	83	95.833	ENSUMAG00000008726	RRP36	100	92.638	Ursus_maritimus
ENSG00000124541	RRP36	83	92.093	ENSVPAG00000008904	RRP36	100	92.093	Vicugna_pacos
ENSG00000124541	RRP36	83	95.833	ENSVVUG00000027816	RRP36	92	91.163	Vulpes_vulpes
ENSG00000124541	RRP36	79	65.217	ENSXCOG00000011238	rrp36	88	48.571	Xiphophorus_couchianus
ENSG00000124541	RRP36	81	52.607	ENSXMAG00000013804	rrp36	50	44.388	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000469	cleavage involved in rRNA processing	-	IEA	Process
GO:0003723	RNA binding	22658674.22681889.	HDA	Function
GO:0005634	nucleus	-	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	20038530.	IDA	Component
GO:0006364	rRNA processing	20038530.	IDA	Process
GO:0006364	rRNA processing	-	TAS	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0042274	ribosomal small subunit biogenesis	20038530.	IDA	Process