EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000124562 (Gene tree)
Gene ID
6631
Gene Symbol
SNRPC
Alias
U1-C|Yhc1
Full Name
small nuclear ribonucleoprotein polypeptide C
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
16,764 bases
Position
chr6:34,757,094-34,773,857
Accession
11157
RBP type
canonical RBP
Summary
This gene encodes one of the specific protein components of the U1 small nuclear ribonucleoprotein (snRNP) particle required for the formation of the spliceosome. The encoded protein participates in the processing of nuclear precursor messenger RNA splicing. snRNP particles are attacked by autoantibodies frequently produced by patients with connective tissue diseases. The genome contains several pseudogenes of this functional gene. Alternative splicing results in a non-coding transcript variant.[provided by RefSeq, Oct 2009]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000244520zf-U1PF06220.124.1e-2211
ENSP00000363129zf-U1PF06220.121e-1911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
1826349Zinc finger-like structure in U1-specific protein C is essential for specific binding to U1 snRNP.Nucleic Acids Res1991 Feb 11Nelissen RL-
19325628Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution.Nature2009 Mar 26Pomeranz Krummel DAdoi: 10.1038/nature07851.
25555158Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition.Elife2015 Jan 2Kondo Ydoi: 10.7554/eLife.04986.
24748659Genome-wide RNA-binding analysis of the trypanosome U1 snRNP proteins U1C and U1-70K reveals cis/trans-spliceosomal network.Nucleic Acids Res2014 JunPreuBer Cdoi: 10.1093/nar/gku286
15465910Effects of the U1C L13 mutation and temperature regulation of yeast commitment complex formation.Proc Natl Acad Sci U S A2004 Oct 12Du H-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000374017SNRPC-2021054-ENSP00000363129180 (aa)-A0A0A0MRR7
ENST00000244520SNRPC-201842-ENSP00000244520159 (aa)-P09234
ENST00000474635SNRPC-204511--- (aa)--
ENST00000374018SNRPC-203600-ENSP00000363130118 (aa)-Q5TAL2
Gene Model
Click here to download ENSG00000124562's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000124562rs75398113634760294CObese vs. thin30677029[1.19-1.42]1.3EFO_0007041
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000124562's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000124562SNRPC100100.000ENSAMEG00000000963SNRPC10095.028Ailuropoda_melanoleuca
ENSG00000124562SNRPC10096.610ENSACAG00000015721SNRPC9989.385Anolis_carolinensis
ENSG00000124562SNRPC10099.371ENSANAG00000007843-10099.371Aotus_nancymaae
ENSG00000124562SNRPC10093.220ENSANAG00000021026-10080.503Aotus_nancymaae
ENSG00000124562SNRPC10092.373ENSANAG00000020588-9291.772Aotus_nancymaae
ENSG00000124562SNRPC10089.308ENSANAG00000019726-10084.884Aotus_nancymaae
ENSG00000124562SNRPC10076.101ENSANAG00000021444-6183.333Aotus_nancymaae
ENSG00000124562SNRPC100100.000ENSANAG00000019696-100100.000Aotus_nancymaae
ENSG00000124562SNRPC10095.763ENSANAG00000019157-10095.597Aotus_nancymaae
ENSG00000124562SNRPC10084.906ENSAMXG00000032641snrpc10072.956Astyanax_mexicanus
ENSG00000124562SNRPC100100.000ENSBTAG00000024549SNRPC100100.000Bos_taurus
ENSG00000124562SNRPC10098.742ENSCJAG00000043055-10098.742Callithrix_jacchus
ENSG00000124562SNRPC100100.000ENSCJAG00000015321-100100.000Callithrix_jacchus
ENSG00000124562SNRPC10097.484ENSCJAG00000041822-10097.484Callithrix_jacchus
ENSG00000124562SNRPC10078.616ENSCAFG00000025525-10078.616Canis_familiaris
ENSG00000124562SNRPC74100.000ENSCAFG00000001231-93100.000Canis_familiaris
ENSG00000124562SNRPC10095.597ENSCAFG00000031775-10095.597Canis_familiaris
ENSG00000124562SNRPC10097.500ENSCAFG00000028988-10097.500Canis_familiaris
ENSG00000124562SNRPC10080.292ENSCAFG00020026577-10084.831Canis_lupus_dingo
ENSG00000124562SNRPC10095.597ENSCAFG00020017383-10095.597Canis_lupus_dingo
ENSG00000124562SNRPC100100.000ENSCAFG00020005945-100100.000Canis_lupus_dingo
ENSG00000124562SNRPC10096.610ENSCAFG00020005758-10096.226Canis_lupus_dingo
ENSG00000124562SNRPC10088.136ENSCAFG00020009944-9088.535Canis_lupus_dingo
ENSG00000124562SNRPC10072.327ENSCHIG00000005039-10071.069Capra_hircus
ENSG00000124562SNRPC100100.000ENSCHIG00000012087-10099.371Capra_hircus
ENSG00000124562SNRPC100100.000ENSTSYG00000011216-100100.000Carlito_syrichta
ENSG00000124562SNRPC9989.241ENSTSYG00000029745-6294.309Carlito_syrichta
ENSG00000124562SNRPC10083.019ENSTSYG00000025721-10076.101Carlito_syrichta
ENSG00000124562SNRPC100100.000ENSCAPG00000005161SNRPC100100.000Cavia_aperea
ENSG00000124562SNRPC100100.000ENSCPOG00000008563SNRPC100100.000Cavia_porcellus
ENSG00000124562SNRPC10069.811ENSCCAG00000028293-6386.585Cebus_capucinus
ENSG00000124562SNRPC10091.525ENSCCAG00000022751-9790.566Cebus_capucinus
ENSG00000124562SNRPC9596.429ENSCCAG00000022209-9580.128Cebus_capucinus
ENSG00000124562SNRPC9981.529ENSCCAG00000026624-6675.796Cebus_capucinus
ENSG00000124562SNRPC10094.340ENSCCAG00000036059-8994.340Cebus_capucinus
ENSG00000124562SNRPC100100.000ENSCATG00000035787SNRPC100100.000Cercocebus_atys
ENSG00000124562SNRPC100100.000ENSCLAG00000016920SNRPC100100.000Chinchilla_lanigera
ENSG00000124562SNRPC9981.529ENSCLAG00000010242-9682.051Chinchilla_lanigera
ENSG00000124562SNRPC10089.326ENSCSAG00000009821SNRPC10089.326Chlorocebus_sabaeus
ENSG00000124562SNRPC10081.132ENSCHOG00000011439SNRPC10077.778Choloepus_hoffmanni
ENSG00000124562SNRPC10097.484ENSCPBG00000027142SNRPC10097.484Chrysemys_picta_bellii
ENSG00000124562SNRPC9749.351ENSCING00000021229ci-zf(matrin)-45185.484Ciona_intestinalis
ENSG00000124562SNRPC100100.000ENSCANG00000028035SNRPC100100.000Colobus_angolensis_palliatus
ENSG00000124562SNRPC10087.421ENSCGRG00001021483-10085.535Cricetulus_griseus_chok1gshd
ENSG00000124562SNRPC10099.371ENSCGRG00001009011-10099.371Cricetulus_griseus_chok1gshd
ENSG00000124562SNRPC10099.153ENSCGRG00000005005Snrpc10098.742Cricetulus_griseus_crigri
ENSG00000124562SNRPC10084.906ENSDARG00000009871snrpc10084.906Danio_rerio
ENSG00000124562SNRPC10099.153ENSDNOG00000034699-9998.742Dasypus_novemcinctus
ENSG00000124562SNRPC7599.160ENSDNOG00000042403-9499.160Dasypus_novemcinctus
ENSG00000124562SNRPC10081.132ENSDORG00000005955Snrpc7576.536Dipodomys_ordii
ENSG00000124562SNRPC9579.470ENSDORG00000029823-5696.104Dipodomys_ordii
ENSG00000124562SNRPC9892.308ENSETEG00000011265-10092.308Echinops_telfairi
ENSG00000124562SNRPC5295.181ENSETEG00000008756-9483.838Echinops_telfairi
ENSG00000124562SNRPC9896.154ENSETEG00000008268-10096.154Echinops_telfairi
ENSG00000124562SNRPC100100.000ENSEASG00005021007SNRPC100100.000Equus_asinus_asinus
ENSG00000124562SNRPC100100.000ENSECAG00000026848SNRPC100100.000Equus_caballus
ENSG00000124562SNRPC9979.747ENSEEUG00000014633SNRPC10076.111Erinaceus_europaeus
ENSG00000124562SNRPC10078.616ENSELUG00000000815SNRPC5094.872Esox_lucius
ENSG00000124562SNRPC100100.000ENSFCAG00000044077-100100.000Felis_catus
ENSG00000124562SNRPC10093.082ENSFCAG00000031775-10083.889Felis_catus
ENSG00000124562SNRPC10098.742ENSFALG00000003756SNRPC10098.742Ficedula_albicollis
ENSG00000124562SNRPC100100.000ENSFDAG00000018111SNRPC100100.000Fukomys_damarensis
ENSG00000124562SNRPC10096.875ENSGALG00000002773SNRPC10096.875Gallus_gallus
ENSG00000124562SNRPC10097.484ENSGAGG00000003063SNRPC10097.484Gopherus_agassizii
ENSG00000124562SNRPC100100.000ENSGGOG00000012499SNRPC100100.000Gorilla_gorilla
ENSG00000124562SNRPC10081.132ENSHGLG00000017741-10078.616Heterocephalus_glaber_female
ENSG00000124562SNRPC8175.194ENSHGLG00000005871-10075.472Heterocephalus_glaber_female
ENSG00000124562SNRPC100100.000ENSHGLG00000013981SNRPC100100.000Heterocephalus_glaber_female
ENSG00000124562SNRPC10094.969ENSHGLG00100017764-10094.969Heterocephalus_glaber_male
ENSG00000124562SNRPC100100.000ENSHGLG00100009478SNRPC100100.000Heterocephalus_glaber_male
ENSG00000124562SNRPC10081.132ENSHGLG00100010786-10078.616Heterocephalus_glaber_male
ENSG00000124562SNRPC10085.535ENSIPUG00000024851snrpc10085.535Ictalurus_punctatus
ENSG00000124562SNRPC100100.000ENSSTOG00000013786SNRPC100100.000Ictidomys_tridecemlineatus
ENSG00000124562SNRPC10099.371ENSJJAG00000021741Snrpc10099.371Jaculus_jaculus
ENSG00000124562SNRPC10088.125ENSLACG00000013753SNRPC8990.625Latimeria_chalumnae
ENSG00000124562SNRPC100100.000ENSLAFG00000013534SNRPC100100.000Loxodonta_africana
ENSG00000124562SNRPC100100.000ENSMFAG00000031764-100100.000Macaca_fascicularis
ENSG00000124562SNRPC10099.371ENSMFAG00000030525-10099.371Macaca_fascicularis
ENSG00000124562SNRPC100100.000ENSMMUG00000000869-9798.742Macaca_mulatta
ENSG00000124562SNRPC10089.937ENSMMUG00000045425-10089.937Macaca_mulatta
ENSG00000124562SNRPC10099.153ENSMMUG00000039415-10098.742Macaca_mulatta
ENSG00000124562SNRPC100100.000ENSMNEG00000032731SNRPC100100.000Macaca_nemestrina
ENSG00000124562SNRPC100100.000ENSMLEG00000033916-100100.000Mandrillus_leucophaeus
ENSG00000124562SNRPC10088.983ENSMLEG00000040224-9985.632Mandrillus_leucophaeus
ENSG00000124562SNRPC10096.855ENSMGAG00000006054SNRPC10096.855Meleagris_gallopavo
ENSG00000124562SNRPC10099.371ENSMICG00000007339-10099.371Microcebus_murinus
ENSG00000124562SNRPC10088.050ENSMICG00000009130-10088.679Microcebus_murinus
ENSG00000124562SNRPC10099.371ENSMICG00000032183-10099.371Microcebus_murinus
ENSG00000124562SNRPC10084.906ENSMICG00000036552-9377.976Microcebus_murinus
ENSG00000124562SNRPC10099.371ENSMOCG00000017609Snrpc10099.371Microtus_ochrogaster
ENSG00000124562SNRPC10065.254ENSMODG00000025263-10073.585Monodelphis_domestica
ENSG00000124562SNRPC10098.742ENSMODG00000013904-10098.742Monodelphis_domestica
ENSG00000124562SNRPC10066.667ENSMALG00000001197snrpc10065.244Monopterus_albus
ENSG00000124562SNRPC10099.371MGP_CAROLIEiJ_G0021308Snrpc10099.371Mus_caroli
ENSG00000124562SNRPC10099.371ENSMUSG00000024217Snrpc10099.371Mus_musculus
ENSG00000124562SNRPC7499.153MGP_SPRETEiJ_G0022221-9899.153Mus_spretus
ENSG00000124562SNRPC100100.000ENSMPUG00000003210SNRPC10099.371Mustela_putorius_furo
ENSG00000124562SNRPC100100.000ENSMLUG00000002488SNRPC10099.371Myotis_lucifugus
ENSG00000124562SNRPC10099.371ENSNGAG00000019686Snrpc10099.371Nannospalax_galili
ENSG00000124562SNRPC100100.000ENSNLEG00000034810SNRPC100100.000Nomascus_leucogenys
ENSG00000124562SNRPC10099.153ENSMEUG00000009300SNRPC10099.296Notamacropus_eugenii
ENSG00000124562SNRPC10099.371ENSODEG00000020201-10099.371Octodon_degus
ENSG00000124562SNRPC100100.000ENSODEG00000020370-100100.000Octodon_degus
ENSG00000124562SNRPC100100.000ENSODEG00000017080-100100.000Octodon_degus
ENSG00000124562SNRPC100100.000ENSODEG00000018985-100100.000Octodon_degus
ENSG00000124562SNRPC7794.309ENSODEG00000006008-8894.309Octodon_degus
ENSG00000124562SNRPC10099.153ENSODEG00000019633-10098.742Octodon_degus
ENSG00000124562SNRPC10095.902ENSOANG00000003405SNRPC10095.270Ornithorhynchus_anatinus
ENSG00000124562SNRPC100100.000ENSOCUG00000026668-100100.000Oryctolagus_cuniculus
ENSG00000124562SNRPC10098.742ENSOCUG00000026430-9998.742Oryctolagus_cuniculus
ENSG00000124562SNRPC10097.484ENSOCUG00000023292-10097.484Oryctolagus_cuniculus
ENSG00000124562SNRPC9785.088ENSOGAG00000028405-9981.818Otolemur_garnettii
ENSG00000124562SNRPC100100.000ENSOGAG00000008755-10094.444Otolemur_garnettii
ENSG00000124562SNRPC10098.305ENSOGAG00000026269-10098.113Otolemur_garnettii
ENSG00000124562SNRPC100100.000ENSOARG00000010823SNRPC100100.000Ovis_aries
ENSG00000124562SNRPC100100.000ENSPPAG00000043871SNRPC100100.000Pan_paniscus
ENSG00000124562SNRPC9660.390ENSPPRG00000016017-8654.902Panthera_pardus
ENSG00000124562SNRPC100100.000ENSPPRG00000008647-100100.000Panthera_pardus
ENSG00000124562SNRPC100100.000ENSPTIG00000021867-100100.000Panthera_tigris_altaica
ENSG00000124562SNRPC9760.000ENSPTIG00000013329-5083.117Panthera_tigris_altaica
ENSG00000124562SNRPC100100.000ENSPTRG00000018070SNRPC100100.000Pan_troglodytes
ENSG00000124562SNRPC100100.000ENSPANG00000022802-100100.000Papio_anubis
ENSG00000124562SNRPC10088.983ENSPANG00000018228-9488.679Papio_anubis
ENSG00000124562SNRPC10095.763ENSPSIG00000004876SNRPC7796.815Pelodiscus_sinensis
ENSG00000124562SNRPC10099.371ENSPEMG00000010773Snrpc10099.371Peromyscus_maniculatus_bairdii
ENSG00000124562SNRPC10087.421ENSPEMG00000002763-10085.535Peromyscus_maniculatus_bairdii
ENSG00000124562SNRPC52100.000ENSPPYG00000029902-84100.000Pongo_abelii
ENSG00000124562SNRPC100100.000ENSPCAG00000016885SNRPC10091.667Procavia_capensis
ENSG00000124562SNRPC100100.000ENSPCOG00000004904SNRPC100100.000Propithecus_coquereli
ENSG00000124562SNRPC100100.000ENSPVAG00000015597SNRPC10093.923Pteropus_vampyrus
ENSG00000124562SNRPC10099.371ENSRNOG00000000493Snrpc10099.371Rattus_norvegicus
ENSG00000124562SNRPC10099.371ENSRBIG00000022998-10099.371Rhinopithecus_bieti
ENSG00000124562SNRPC10099.371ENSRBIG00000014819-10099.371Rhinopithecus_bieti
ENSG00000124562SNRPC100100.000ENSRBIG00000037567-100100.000Rhinopithecus_bieti
ENSG00000124562SNRPC10089.308ENSRBIG00000036353-9184.483Rhinopithecus_bieti
ENSG00000124562SNRPC100100.000ENSRROG00000041300SNRPC100100.000Rhinopithecus_roxellana
ENSG00000124562SNRPC100100.000ENSSBOG00000031528-100100.000Saimiri_boliviensis_boliviensis
ENSG00000124562SNRPC9582.781ENSSBOG00000032361-6681.250Saimiri_boliviensis_boliviensis
ENSG00000124562SNRPC9882.692ENSSBOG00000023189-9182.692Saimiri_boliviensis_boliviensis
ENSG00000124562SNRPC9881.410ENSSBOG00000032882-9580.380Saimiri_boliviensis_boliviensis
ENSG00000124562SNRPC10065.254ENSSHAG00000002972-10075.472Sarcophilus_harrisii
ENSG00000124562SNRPC10099.153ENSSHAG00000000945-9694.186Sarcophilus_harrisii
ENSG00000124562SNRPC10081.132ENSSFOG00015019150snrpc10081.132Scleropages_formosus
ENSG00000124562SNRPC10076.101ENSSARG00000008970SNRPC9675.439Sorex_araneus
ENSG00000124562SNRPC10098.113ENSSPUG00000002502SNRPC10098.113Sphenodon_punctatus
ENSG00000124562SNRPC100100.000ENSSSCG00000001531SNRPC100100.000Sus_scrofa
ENSG00000124562SNRPC10098.305ENSTGUG00000001773SNRPC9998.726Taeniopygia_guttata
ENSG00000124562SNRPC9892.308ENSTBEG00000013022-10092.308Tupaia_belangeri
ENSG00000124562SNRPC9873.718ENSTBEG00000015356-6891.667Tupaia_belangeri
ENSG00000124562SNRPC10066.949ENSTBEG00000016759-7972.535Tupaia_belangeri
ENSG00000124562SNRPC100100.000ENSTTRG00000007827SNRPC10093.956Tursiops_truncatus
ENSG00000124562SNRPC7599.160ENSUAMG00000014125SNRPC8099.160Ursus_americanus
ENSG00000124562SNRPC10089.326ENSUMAG00000010869SNRPC10089.326Ursus_maritimus
ENSG00000124562SNRPC10069.492ENSVPAG00000003106SNRPC10063.889Vicugna_pacos
ENSG00000124562SNRPC10093.220ENSVVUG00000010467-9589.535Vulpes_vulpes
ENSG00000124562SNRPC100100.000ENSVVUG00000021947-10098.742Vulpes_vulpes
ENSG00000124562SNRPC10089.937ENSXETG00000024721snrpc10089.937Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000243commitment complex-IEAComponent
GO:0000387spliceosomal snRNP assembly8972845.IDAProcess
GO:0000395mRNA 5'-splice site recognition21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome8972845.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22681889.HDAFunction
GO:0003727single-stranded RNA binding8798632.IDAFunction
GO:0003729mRNA binding-IEAFunction
GO:0005515protein binding8076607.12486009.22365833.IPIFunction
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP15312772.15525645.21113136.IDAComponent
GO:0008270zinc ion binding15312772.IDAFunction
GO:0015030Cajal body10068039.IDAComponent
GO:0030619U1 snRNA binding1826349.IDAFunction
GO:0030627pre-mRNA 5'-splice site binding21873635.IBAFunction
GO:0042803protein homodimerization activity8532530.IPIFunction
GO:0071004U2-type prespliceosome-IEAComponent
GO:1990446U1 snRNP binding-IEAFunction

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