EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000124789 (Gene tree)
Gene ID
9972
Gene Symbol
NUP153
Alias
HNUP153
Full Name
nucleoporin 153
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
91,800 bases
Position
chr6:17,615,035-17,706,834
Accession
8062
RBP type
canonical RBP
Summary
Nuclear pore complexes regulate the transport of macromolecules between the nucleus and cytoplasm. They are composed of at least 100 different polypeptide subunits, many of which belong to the nucleoporin family. Nucleoporins are glycoproteins found in nuclear pores and contain characteristic pentapeptide XFXFG repeats as well as O-linked N-acetylglucosamine residues oriented towards the cytoplasm. The protein encoded by this gene has three distinct domains: a N-terminal region containing a pore targeting and an RNA-binding domain domain, a central region containing multiple zinc finger motifs, and a C-terminal region containing multiple XFXFG repeats. Alternative splicing results in multiple transcript variants of this gene. [provided by RefSeq, May 2013]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000478627zf-RanBPPF00641.184.1e-4314
ENSP00000478627zf-RanBPPF00641.184.1e-4324
ENSP00000478627zf-RanBPPF00641.184.1e-4334
ENSP00000478627zf-RanBPPF00641.184.1e-4344
ENSP00000262077zf-RanBPPF00641.184.6e-4314
ENSP00000262077zf-RanBPPF00641.184.6e-4324
ENSP00000262077zf-RanBPPF00641.184.6e-4334
ENSP00000262077zf-RanBPPF00641.184.6e-4344
ENSP00000444029zf-RanBPPF00641.185.1e-4314
ENSP00000444029zf-RanBPPF00641.185.1e-4324
ENSP00000444029zf-RanBPPF00641.185.1e-4334
ENSP00000444029zf-RanBPPF00641.185.1e-4344

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
17242408Sequence preference in RNA recognition by the nucleoporin Nup153.J Biol Chem2007 Mar 23Ball JR-
14681581The RNA binding domain within the nucleoporin Nup153 associates preferentially with single-stranded RNA.RNA2004 JanBall JR-
26221075The Small Molecule R-(-)-β-O-Methylsynephrine Binds to Nucleoporin 153 kDa and Inhibits Angiogenesis.Int J Biol Sci2015 Jul 16Kim NHdoi: 10.7150/ijbs.10603
11567018RNA association defines a functionally conserved domain in the nuclear pore protein Nup153.J Biol Chem2001 Nov 30Dimaano C-
24943837Nup50 is required for cell differentiation and exhibits transcription-dependent dynamics.Mol Biol Cell2014 Aug 15Buchwalter ALdoi: 10.1091/mbc.E14-04-0865
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000613258NUP153-2035811-ENSP000004786271433 (aa)-P49790
ENST00000262077NUP153-2015487XM_005249507ENSP000002620771475 (aa)XP_005249564P49790
ENST00000537253NUP153-2026030-ENSP000004440291506 (aa)-P49790
Gene Model
Click here to download ENSG00000124789's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000124789Neuroblastoma7.09E-718463370
ENSG00000124789Neuroblastoma3.08E-618463370
ENSG00000124789Chlorine1.4470000E-005-
ENSG00000124789Cholesterol, LDL3E-623251661
ENSG00000124789Cholesterol5E-623251661
ENSG00000124789Body Height7E-718391951
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000124789rs2274136617632830GObesity-related traits23251661[NR] mg/dL increase0.03EFO_0004574
ENSG00000124789rs12199222617699091THeight18391951[2.64-6.16] % s.d. increase4.4EFO_0004339
ENSG00000124789rs2274136617632830GObesity-related traits23251661[NR] mg/dL increase0.03EFO_0004611
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000124789's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000124789NUP1535947.263ENSAPOG00000019495nup1539940.929Acanthochromis_polyacanthus
ENSG00000124789NUP1539985.140ENSAMEG00000000721NUP1539984.867Ailuropoda_melanoleuca
ENSG00000124789NUP1538141.680ENSACIG00000010784nup1539940.508Amphilophus_citrinellus
ENSG00000124789NUP1535948.441ENSAOCG00000007098nup1539940.708Amphiprion_ocellaris
ENSG00000124789NUP1538141.692ENSAPEG00000012075nup1539940.757Amphiprion_percula
ENSG00000124789NUP1539940.422ENSATEG00000014134nup1539940.757Anabas_testudineus
ENSG00000124789NUP1539855.420ENSACAG00000004118NUP15310055.878Anolis_carolinensis
ENSG00000124789NUP15310093.929ENSANAG00000001808NUP15310093.929Aotus_nancymaae
ENSG00000124789NUP1539941.099ENSACLG00000016592nup1539939.608Astatotilapia_calliptera
ENSG00000124789NUP1539939.046ENSAMXG00000021025nup1539942.256Astyanax_mexicanus
ENSG00000124789NUP1539985.549ENSBTAG00000017128NUP1539985.208Bos_taurus
ENSG00000124789NUP15310093.089ENSCJAG00000006685NUP15310093.022Callithrix_jacchus
ENSG00000124789NUP15310087.135ENSCAFG00000010146NUP15310085.714Canis_familiaris
ENSG00000124789NUP15310086.757ENSCAFG00020010901NUP1539986.357Canis_lupus_dingo
ENSG00000124789NUP1539985.140ENSCHIG00000023764NUP1539985.198Capra_hircus
ENSG00000124789NUP1539787.295ENSTSYG00000001251NUP1539886.867Carlito_syrichta
ENSG00000124789NUP1539982.834ENSCPOG00000004007NUP1539982.766Cavia_porcellus
ENSG00000124789NUP15310090.712ENSCCAG00000024038NUP15310092.960Cebus_capucinus
ENSG00000124789NUP15310097.488ENSCATG00000041429NUP15310097.488Cercocebus_atys
ENSG00000124789NUP1539983.970ENSCLAG00000001915NUP1539983.697Chinchilla_lanigera
ENSG00000124789NUP15310096.542ENSCSAG00000007624NUP15310096.542Chlorocebus_sabaeus
ENSG00000124789NUP1535769.163ENSCHOG00000013388-10065.655Choloepus_hoffmanni
ENSG00000124789NUP1538760.467ENSCHOG00000003510-9960.280Choloepus_hoffmanni
ENSG00000124789NUP1538060.186ENSCHOG00000007137-10060.355Choloepus_hoffmanni
ENSG00000124789NUP1538760.592ENSCHOG00000008316-9960.748Choloepus_hoffmanni
ENSG00000124789NUP1536357.634ENSCHOG00000009608-10057.849Choloepus_hoffmanni
ENSG00000124789NUP1539965.520ENSCPBG00000008333NUP1539965.652Chrysemys_picta_bellii
ENSG00000124789NUP15310092.100ENSCANG00000033390NUP15310092.100Colobus_angolensis_palliatus
ENSG00000124789NUP15310082.341ENSCGRG00001021016Nup15310081.529Cricetulus_griseus_chok1gshd
ENSG00000124789NUP1539782.096ENSCGRG00000009244Nup15310081.263Cricetulus_griseus_crigri
ENSG00000124789NUP1539940.941ENSCSEG00000017912nup1539840.819Cynoglossus_semilaevis
ENSG00000124789NUP1539339.838ENSCVAG00000020646nup1539739.773Cyprinodon_variegatus
ENSG00000124789NUP1539941.349ENSDARG00000099972nup1539941.335Danio_rerio
ENSG00000124789NUP1539986.426ENSDNOG00000001153NUP1539986.357Dasypus_novemcinctus
ENSG00000124789NUP1539985.082ENSDORG00000001736Nup1539984.673Dipodomys_ordii
ENSG00000124789NUP1538084.706ENSETEG00000010324-7484.706Echinops_telfairi
ENSG00000124789NUP15310087.551ENSEASG00005009945NUP1539987.500Equus_asinus_asinus
ENSG00000124789NUP15310087.754ENSECAG00000016010NUP1539987.705Equus_caballus
ENSG00000124789NUP1537487.415ENSEEUG00000010183NUP1537588.435Erinaceus_europaeus
ENSG00000124789NUP1539942.017ENSELUG00000019108nup1539942.023Esox_lucius
ENSG00000124789NUP1539985.074ENSFCAG00000011583NUP15310084.663Felis_catus
ENSG00000124789NUP1539459.830ENSFALG00000013388NUP1539959.660Ficedula_albicollis
ENSG00000124789NUP1539251.456ENSFHEG00000013401nup1539951.100Fundulus_heteroclitus
ENSG00000124789NUP1538741.299ENSGMOG00000010422nup1539242.291Gadus_morhua
ENSG00000124789NUP1539962.965ENSGALG00000012720NUP1539962.153Gallus_gallus
ENSG00000124789NUP1539940.825ENSGAFG00000010927nup1539940.391Gambusia_affinis
ENSG00000124789NUP1539939.421ENSGACG00000005389nup1539939.561Gasterosteus_aculeatus
ENSG00000124789NUP1539965.138ENSGAGG00000022386NUP1539965.341Gopherus_agassizii
ENSG00000124789NUP15310098.814ENSGGOG00000014261NUP15310098.814Gorilla_gorilla
ENSG00000124789NUP1539941.136ENSHBUG00000002944nup1539841.403Haplochromis_burtoni
ENSG00000124789NUP1539984.016ENSHGLG00000007924NUP1539983.538Heterocephalus_glaber_female
ENSG00000124789NUP1539984.016ENSHGLG00100001529NUP1539983.538Heterocephalus_glaber_male
ENSG00000124789NUP1539937.969ENSHCOG00000019361nup1539938.074Hippocampus_comes
ENSG00000124789NUP1539942.642ENSIPUG00000014605nup1539942.105Ictalurus_punctatus
ENSG00000124789NUP1539786.101ENSSTOG00000005807NUP15310085.476Ictidomys_tridecemlineatus
ENSG00000124789NUP1539980.669ENSJJAG00000016760Nup1539981.216Jaculus_jaculus
ENSG00000124789NUP1539939.665ENSKMAG00000006344nup1539940.491Kryptolebias_marmoratus
ENSG00000124789NUP1539940.357ENSLBEG00000002982nup1539840.347Labrus_bergylta
ENSG00000124789NUP1539846.206ENSLACG00000006480NUP15310046.242Latimeria_chalumnae
ENSG00000124789NUP1539946.718ENSLOCG00000008267nup1539947.028Lepisosteus_oculatus
ENSG00000124789NUP1539986.912ENSLAFG00000015905NUP1539986.435Loxodonta_africana
ENSG00000124789NUP15310097.418ENSMFAG00000045732NUP15310097.418Macaca_fascicularis
ENSG00000124789NUP15310097.488ENSMMUG00000001993NUP15310097.488Macaca_mulatta
ENSG00000124789NUP15310097.558ENSMNEG00000038011NUP15310097.558Macaca_nemestrina
ENSG00000124789NUP15310097.418ENSMLEG00000030776NUP15310097.418Mandrillus_leucophaeus
ENSG00000124789NUP1539940.697ENSMAMG00000013184nup1539841.005Mastacembelus_armatus
ENSG00000124789NUP1539940.938ENSMZEG00005004371nup1539941.593Maylandia_zebra
ENSG00000124789NUP1539862.123ENSMGAG00000003139NUP15310061.507Meleagris_gallopavo
ENSG00000124789NUP1538781.163ENSMAUG00000007737Nup1539180.982Mesocricetus_auratus
ENSG00000124789NUP15310090.523ENSMICG00000006089NUP15310090.105Microcebus_murinus
ENSG00000124789NUP1539982.023ENSMOCG00000007623Nup1539981.545Microtus_ochrogaster
ENSG00000124789NUP1539947.249ENSMMOG00000019049nup1539939.592Mola_mola
ENSG00000124789NUP1539773.246ENSMODG00000010951NUP1539973.040Monodelphis_domestica
ENSG00000124789NUP1538945.436ENSMALG00000013995nup1539940.563Monopterus_albus
ENSG00000124789NUP1539980.930MGP_CAROLIEiJ_G0018483Nup1539981.203Mus_caroli
ENSG00000124789NUP1539981.887ENSMUSG00000021374Nup1539982.023Mus_musculus
ENSG00000124789NUP1539981.613MGP_PahariEiJ_G0019551Nup1539981.681Mus_pahari
ENSG00000124789NUP15310081.947MGP_SPRETEiJ_G0019363Nup15310082.150Mus_spretus
ENSG00000124789NUP15310084.848ENSMLUG00000004775NUP15310084.783Myotis_lucifugus
ENSG00000124789NUP15310081.769ENSNGAG00000013817Nup15310081.499Nannospalax_galili
ENSG00000124789NUP1539939.297ENSNBRG00000012456nup1539938.903Neolamprologus_brichardi
ENSG00000124789NUP15310097.699ENSNLEG00000001141NUP15310097.699Nomascus_leucogenys
ENSG00000124789NUP1538177.929ENSMEUG00000012874NUP1537877.929Notamacropus_eugenii
ENSG00000124789NUP1538878.915ENSOPRG00000006221NUP1538779.317Ochotona_princeps
ENSG00000124789NUP1539978.459ENSODEG00000005620NUP1539978.172Octodon_degus
ENSG00000124789NUP1539942.132ENSONIG00000002524nup1539941.561Oreochromis_niloticus
ENSG00000124789NUP1539767.418ENSOANG00000011858NUP1539967.551Ornithorhynchus_anatinus
ENSG00000124789NUP1539983.345ENSOCUG00000003064NUP15310083.164Oryctolagus_cuniculus
ENSG00000124789NUP1539940.972ENSORLG00000012674nup1539940.133Oryzias_latipes
ENSG00000124789NUP1539940.757ENSORLG00020006026nup1539840.479Oryzias_latipes_hni
ENSG00000124789NUP1539940.366ENSORLG00015013823nup1539840.537Oryzias_latipes_hsok
ENSG00000124789NUP1539940.524ENSOMEG00000012062nup1539941.368Oryzias_melastigma
ENSG00000124789NUP15310087.351ENSOGAG00000014899NUP1539987.366Otolemur_garnettii
ENSG00000124789NUP1539884.732ENSOARG00000011514NUP1539984.594Ovis_aries
ENSG00000124789NUP15310098.953ENSPPAG00000029729NUP15310098.953Pan_paniscus
ENSG00000124789NUP1539985.074ENSPPRG00000006160NUP15310084.663Panthera_pardus
ENSG00000124789NUP1539984.513ENSPTIG00000017212NUP15310084.108Panthera_tigris_altaica
ENSG00000124789NUP15310099.232ENSPTRG00000017752NUP15310099.232Pan_troglodytes
ENSG00000124789NUP15310097.278ENSPANG00000015139NUP15310097.278Papio_anubis
ENSG00000124789NUP1539940.723ENSPKIG00000001734nup1539939.017Paramormyrops_kingsleyae
ENSG00000124789NUP1539864.798ENSPSIG00000017226NUP15310065.414Pelodiscus_sinensis
ENSG00000124789NUP1539940.719ENSPMGG00000001716nup1539940.438Periophthalmus_magnuspinnatus
ENSG00000124789NUP15310083.097ENSPEMG00000020772Nup15310083.097Peromyscus_maniculatus_bairdii
ENSG00000124789NUP1535741.584ENSPMAG00000002487-10036.550Petromyzon_marinus
ENSG00000124789NUP1539972.586ENSPCIG00000029680NUP1539972.316Phascolarctos_cinereus
ENSG00000124789NUP1539942.358ENSPFOG00000013146nup1539941.339Poecilia_formosa
ENSG00000124789NUP1536647.568ENSPMEG00000021677nup1539840.823Poecilia_mexicana
ENSG00000124789NUP1539939.436ENSPREG00000007463nup1539840.827Poecilia_reticulata
ENSG00000124789NUP15310094.915ENSPPYG00000016259NUP15310094.915Pongo_abelii
ENSG00000124789NUP1538091.228ENSPCAG00000010444NUP1538091.228Procavia_capensis
ENSG00000124789NUP15310087.068ENSPCOG00000014488NUP15310087.178Propithecus_coquereli
ENSG00000124789NUP1539483.859ENSPVAG00000012632NUP1539983.768Pteropus_vampyrus
ENSG00000124789NUP1539941.048ENSPNYG00000011225nup1539940.298Pundamilia_nyererei
ENSG00000124789NUP1539941.858ENSPNAG00000024377nup1539941.386Pygocentrus_nattereri
ENSG00000124789NUP1539981.297ENSRNOG00000001456Nup1539980.887Rattus_norvegicus
ENSG00000124789NUP15310097.069ENSRBIG00000041878NUP15310097.069Rhinopithecus_bieti
ENSG00000124789NUP1539996.500ENSRROG00000029849NUP15310097.153Rhinopithecus_roxellana
ENSG00000124789NUP15310094.557ENSSBOG00000024532NUP15310094.557Saimiri_boliviensis_boliviensis
ENSG00000124789NUP1536168.716ENSSHAG00000016087-9768.277Sarcophilus_harrisii
ENSG00000124789NUP1539940.859ENSSFOG00015011040nup1539941.636Scleropages_formosus
ENSG00000124789NUP1539939.325ENSSMAG00000008418nup1539840.000Scophthalmus_maximus
ENSG00000124789NUP1535948.707ENSSDUG00000010779nup1539940.076Seriola_dumerili
ENSG00000124789NUP1538646.089ENSSLDG00000012692nup1539939.556Seriola_lalandi_dorsalis
ENSG00000124789NUP1539776.091ENSSARG00000013269NUP1539779.767Sorex_araneus
ENSG00000124789NUP1539963.318ENSSPUG00000016687NUP1539862.980Sphenodon_punctatus
ENSG00000124789NUP1536447.164ENSSPAG00000014945nup1539841.327Stegastes_partitus
ENSG00000124789NUP1539987.176ENSSSCG00000026034NUP15310086.824Sus_scrofa
ENSG00000124789NUP1539759.767ENSTGUG00000005917NUP15310059.671Taeniopygia_guttata
ENSG00000124789NUP1538938.881ENSTRUG00000010163nup1539938.696Takifugu_rubripes
ENSG00000124789NUP1539939.925ENSTNIG00000009182nup1539940.801Tetraodon_nigroviridis
ENSG00000124789NUP1536885.227ENSTBEG00000004161NUP1536884.943Tupaia_belangeri
ENSG00000124789NUP1538883.644ENSTTRG00000007060NUP1538984.218Tursiops_truncatus
ENSG00000124789NUP1536181.084ENSUAMG00000015215NUP1539880.994Ursus_americanus
ENSG00000124789NUP1539882.491ENSUMAG00000017135NUP1539982.353Ursus_maritimus
ENSG00000124789NUP15310087.686ENSVPAG00000002072NUP15310087.551Vicugna_pacos
ENSG00000124789NUP15310086.554ENSVVUG00000003265NUP15310086.149Vulpes_vulpes
ENSG00000124789NUP1539946.179ENSXETG00000014197nup1539946.138Xenopus_tropicalis
ENSG00000124789NUP1539940.405ENSXCOG00000020098nup1539940.938Xiphophorus_couchianus
ENSG00000124789NUP1539941.195ENSXMAG00000003437nup1539841.195Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0005515protein binding11777942.11896061.12802065.17255949.18845677.20133940.21858095.23652018.IPIFunction
GO:0005643nuclear pore12802065.15229283.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005730nucleolus-IDAComponent
GO:0005829cytosol-IDAComponent
GO:0006110regulation of glycolytic process-TASProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0006409tRNA export from nucleus-TASProcess
GO:0006606protein import into nucleus21873635.IBAProcess
GO:0008139nuclear localization sequence binding21873635.IBAFunction
GO:0016032viral process-TASProcess
GO:0016925protein sumoylation-TASProcess
GO:0017056structural constituent of nuclear pore21873635.IBAFunction
GO:0017056structural constituent of nuclear pore22253824.IDAFunction
GO:0017056structural constituent of nuclear pore15229283.IMPFunction
GO:0019083viral transcription-TASProcess
GO:0031965nuclear membrane11839768.12802065.15229283.20407419.IDAComponent
GO:0034399nuclear periphery11839768.15229283.IDAComponent
GO:0042405nuclear inclusion body11839768.IDAComponent
GO:0042802identical protein binding23238392.IPIFunction
GO:0043495protein membrane anchor12802065.15229283.IMPFunction
GO:0043657host cell-IEAComponent
GO:0044613nuclear pore central transport channel21873635.IBAComponent
GO:0044615nuclear pore nuclear basket21873635.IBAComponent
GO:0044615nuclear pore nuclear basket11839768.IDAComponent
GO:0046718viral entry into host cell-IEAProcess
GO:0046832negative regulation of RNA export from nucleus22253824.IDAProcess
GO:0046872metal ion binding-IEAFunction
GO:0051292nuclear pore complex assembly12802065.15229283.IMPProcess
GO:0060964regulation of gene silencing by miRNA-TASProcess
GO:0075732viral penetration into host nucleus-IEAProcess
GO:0075733intracellular transport of virus-TASProcess
GO:1900034regulation of cellular response to heat-TASProcess

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