EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000125445 (Gene tree)
Gene ID
51081
Gene Symbol
MRPS7
Alias
MRP-S|RP-S7|RPMS7
Full Name
mitochondrial ribosomal protein S7
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
4,709 bases
Position
chr17:75,261,668-75,266,376
Accession
14499
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. In the prokaryotic ribosome, the comparable protein is thought to play an essential role in organizing the 3' domain of the 16 S rRNA in the vicinity of the P- and A-sites. Pseudogenes corresponding to this gene are found on chromosomes 8p and 12p. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000463870Ribosomal_S7PF00177.211.1e-3611
ENSP00000245539Ribosomal_S7PF00177.212.9e-3611
ENSP00000463683Ribosomal_S7PF00177.214e-3611
ENSP00000462506Ribosomal_S7PF00177.211.7e-3511
ENSP00000463263Ribosomal_S7PF00177.216.7e-1311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
27812116Ancient Out-of-Africa Mitochondrial DNA Variants Associate with Distinct Mitochondrial Gene Expression Patterns.PLoS Genet2016 Nov 3Cohen Tdoi: 10.1371/journal.pgen.1006407
25556185Mutation in mitochondrial ribosomal protein S7 (MRPS7) causes congenital sensorineural deafness, progressive hepatic and renal failure and lactic acidemia.Hum Mol Genet2015 Apr 15Menezes MJdoi: 10.1093/hmg/ddu747
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000584678MRPS7-207692-ENSP00000462506156 (aa)-J3KSI8
ENST00000577767MRPS7-202566--- (aa)--
ENST00000581993MRPS7-205731-ENSP00000463870172 (aa)-J3QQS1
ENST00000245539MRPS7-2011406-ENSP00000245539242 (aa)-Q9Y2R9
ENST00000579761MRPS7-2041717-ENSP00000463263183 (aa)-J3QKW2
ENST00000579002MRPS7-2031638-ENSP00000463683271 (aa)-J3QLS3
ENST00000583407MRPS7-206864-ENSP0000046267728 (aa)-J3KSV8
Gene Model
Click here to download ENSG00000125445's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000125445's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000125445MRPS79966.452ENSAPOG00000020014mrps79960.352Acanthochromis_polyacanthus
ENSG00000125445MRPS79991.228ENSAMEG00000009287MRPS710086.364Ailuropoda_melanoleuca
ENSG00000125445MRPS79969.032ENSACIG00000004584mrps79962.445Amphilophus_citrinellus
ENSG00000125445MRPS79732.237ENSACIG00000010369-7432.051Amphilophus_citrinellus
ENSG00000125445MRPS79966.452ENSAOCG00000024207mrps79960.793Amphiprion_ocellaris
ENSG00000125445MRPS79966.452ENSAPEG00000009421mrps79960.793Amphiprion_percula
ENSG00000125445MRPS79965.806ENSATEG00000024669mrps79462.273Anabas_testudineus
ENSG00000125445MRPS79974.194ENSAPLG00000007763MRPS79368.304Anas_platyrhynchos
ENSG00000125445MRPS79976.129ENSACAG00000006441MRPS710067.901Anolis_carolinensis
ENSG00000125445MRPS79976.608ENSANAG00000032039-9968.966Aotus_nancymaae
ENSG00000125445MRPS79991.813ENSANAG00000033690-10090.083Aotus_nancymaae
ENSG00000125445MRPS79970.968ENSACLG00000027980mrps79765.315Astatotilapia_calliptera
ENSG00000125445MRPS79970.323ENSAMXG00000034420mrps79961.674Astyanax_mexicanus
ENSG00000125445MRPS79989.032ENSBTAG00000016133MRPS710085.950Bos_taurus
ENSG00000125445MRPS79839.610WBGene00013324mrps-79834.071Caenorhabditis_elegans
ENSG00000125445MRPS710086.777ENSCJAG00000022706-10086.777Callithrix_jacchus
ENSG00000125445MRPS710088.843ENSCJAG00000014458-10088.843Callithrix_jacchus
ENSG00000125445MRPS79990.643ENSCAFG00000004752MRPS710085.950Canis_familiaris
ENSG00000125445MRPS79990.643ENSCAFG00020000224MRPS710085.950Canis_lupus_dingo
ENSG00000125445MRPS79990.323ENSCHIG00000026974MRPS710085.537Capra_hircus
ENSG00000125445MRPS79994.194ENSTSYG00000009380MRPS710088.017Carlito_syrichta
ENSG00000125445MRPS79584.459ENSCAPG00000010311MRPS710084.459Cavia_aperea
ENSG00000125445MRPS79985.161ENSCPOG00000001195MRPS710080.579Cavia_porcellus
ENSG00000125445MRPS710089.706ENSCCAG00000025391-10089.706Cebus_capucinus
ENSG00000125445MRPS79972.515ENSCCAG00000019574-9774.178Cebus_capucinus
ENSG00000125445MRPS710093.802ENSCATG00000045102MRPS710093.802Cercocebus_atys
ENSG00000125445MRPS79989.677ENSCLAG00000006648MRPS710081.405Chinchilla_lanigera
ENSG00000125445MRPS710093.802ENSCSAG00000004729MRPS710093.802Chlorocebus_sabaeus
ENSG00000125445MRPS79977.193ENSCHOG00000000768MRPS710077.473Choloepus_hoffmanni
ENSG00000125445MRPS79973.548ENSCPBG00000028105MRPS79667.826Chrysemys_picta_bellii
ENSG00000125445MRPS79542.683ENSCSAVG00000006502-7243.030Ciona_savignyi
ENSG00000125445MRPS710092.975ENSCANG00000010640MRPS710092.975Colobus_angolensis_palliatus
ENSG00000125445MRPS79987.742ENSCGRG00001021002Mrps710081.405Cricetulus_griseus_chok1gshd
ENSG00000125445MRPS79987.742ENSCGRG00000010460Mrps77383.721Cricetulus_griseus_crigri
ENSG00000125445MRPS79964.516ENSCSEG00000012596mrps78660.465Cynoglossus_semilaevis
ENSG00000125445MRPS79967.742ENSCVAG00000003012mrps79963.158Cyprinodon_variegatus
ENSG00000125445MRPS79972.258ENSDARG00000101622mrps79764.286Danio_rerio
ENSG00000125445MRPS79987.742ENSDNOG00000033064-7382.231Dasypus_novemcinctus
ENSG00000125445MRPS79965.497ENSDNOG00000044727-10060.996Dasypus_novemcinctus
ENSG00000125445MRPS79988.387ENSDORG00000005144Mrps710082.645Dipodomys_ordii
ENSG00000125445MRPS79947.403FBgn0032236mRpS77646.429Drosophila_melanogaster
ENSG00000125445MRPS79987.742ENSETEG00000000312MRPS710081.818Echinops_telfairi
ENSG00000125445MRPS79953.548ENSEBUG00000004559mrps79547.291Eptatretus_burgeri
ENSG00000125445MRPS79992.903ENSEASG00005000432MRPS710089.256Equus_asinus_asinus
ENSG00000125445MRPS79992.903ENSECAG00000021867MRPS78789.256Equus_caballus
ENSG00000125445MRPS79984.795ENSEEUG00000015775MRPS710076.446Erinaceus_europaeus
ENSG00000125445MRPS79970.323ENSELUG00000007699mrps79764.865Esox_lucius
ENSG00000125445MRPS79990.323ENSFCAG00000034153MRPS710085.950Felis_catus
ENSG00000125445MRPS79976.129ENSFALG00000001162MRPS79971.090Ficedula_albicollis
ENSG00000125445MRPS79988.387ENSFDAG00000004010MRPS710079.339Fukomys_damarensis
ENSG00000125445MRPS79967.097ENSFHEG00000002847mrps79960.793Fundulus_heteroclitus
ENSG00000125445MRPS79967.742ENSGMOG00000004658mrps710064.929Gadus_morhua
ENSG00000125445MRPS79972.258ENSGALG00000007999MRPS710064.463Gallus_gallus
ENSG00000125445MRPS79967.097ENSGAFG00000019075mrps79763.063Gambusia_affinis
ENSG00000125445MRPS79966.452ENSGACG00000012264mrps710063.033Gasterosteus_aculeatus
ENSG00000125445MRPS79974.194ENSGAGG00000022612MRPS79468.000Gopherus_agassizii
ENSG00000125445MRPS710099.587ENSGGOG00000007640MRPS710099.587Gorilla_gorilla
ENSG00000125445MRPS79970.323ENSHBUG00000011147mrps79764.865Haplochromis_burtoni
ENSG00000125445MRPS79991.613ENSHGLG00000012098MRPS710083.058Heterocephalus_glaber_female
ENSG00000125445MRPS79991.613ENSHGLG00100011509MRPS710083.058Heterocephalus_glaber_male
ENSG00000125445MRPS79967.742ENSHCOG00000008732mrps79960.352Hippocampus_comes
ENSG00000125445MRPS78073.600ENSIPUG00000001352-10073.600Ictalurus_punctatus
ENSG00000125445MRPS79973.548ENSIPUG00000022358mrps79765.766Ictalurus_punctatus
ENSG00000125445MRPS79989.677ENSSTOG00000015200MRPS710083.884Ictidomys_tridecemlineatus
ENSG00000125445MRPS79990.323ENSJJAG00000012105Mrps710083.058Jaculus_jaculus
ENSG00000125445MRPS79966.452ENSKMAG00000020799mrps79762.613Kryptolebias_marmoratus
ENSG00000125445MRPS79963.226ENSLBEG00000027327mrps79759.910Labrus_bergylta
ENSG00000125445MRPS79972.903ENSLACG00000003039MRPS79069.124Latimeria_chalumnae
ENSG00000125445MRPS79872.781ENSLOCG00000013326mrps79965.198Lepisosteus_oculatus
ENSG00000125445MRPS79988.387ENSLAFG00000002873MRPS710085.124Loxodonta_africana
ENSG00000125445MRPS710093.802ENSMFAG00000042971MRPS710093.802Macaca_fascicularis
ENSG00000125445MRPS710094.215ENSMMUG00000048488MRPS710094.215Macaca_mulatta
ENSG00000125445MRPS710094.215ENSMNEG00000022424MRPS710094.215Macaca_nemestrina
ENSG00000125445MRPS710093.388ENSMLEG00000032202MRPS710093.388Mandrillus_leucophaeus
ENSG00000125445MRPS79966.452ENSMAMG00000023581mrps79960.177Mastacembelus_armatus
ENSG00000125445MRPS79971.613ENSMZEG00005013021mrps79765.766Maylandia_zebra
ENSG00000125445MRPS79972.903ENSMGAG00000009441MRPS79467.421Meleagris_gallopavo
ENSG00000125445MRPS79986.452ENSMAUG00000015115Mrps710082.645Mesocricetus_auratus
ENSG00000125445MRPS79991.813ENSMICG00000007599MRPS710087.190Microcebus_murinus
ENSG00000125445MRPS79989.032ENSMOCG00000005519Mrps710085.537Microtus_ochrogaster
ENSG00000125445MRPS79968.387ENSMMOG00000005222mrps79762.613Mola_mola
ENSG00000125445MRPS79980.645ENSMODG00000007290MRPS710071.488Monodelphis_domestica
ENSG00000125445MRPS79967.097ENSMALG00000005869mrps79561.751Monopterus_albus
ENSG00000125445MRPS79989.032MGP_CAROLIEiJ_G0017411Mrps710084.711Mus_caroli
ENSG00000125445MRPS79989.677ENSMUSG00000046756Mrps710084.711Mus_musculus
ENSG00000125445MRPS79989.677MGP_PahariEiJ_G0018541Mrps710085.537Mus_pahari
ENSG00000125445MRPS79989.677MGP_SPRETEiJ_G0018256Mrps710084.711Mus_spretus
ENSG00000125445MRPS79991.813ENSMPUG00000013928MRPS710087.190Mustela_putorius_furo
ENSG00000125445MRPS79985.350ENSMLUG00000015237MRPS710080.738Myotis_lucifugus
ENSG00000125445MRPS79987.742ENSNGAG00000005053Mrps710081.818Nannospalax_galili
ENSG00000125445MRPS79970.968ENSNBRG00000005031mrps79765.315Neolamprologus_brichardi
ENSG00000125445MRPS79783.660ENSNLEG00000035341-8878.035Nomascus_leucogenys
ENSG00000125445MRPS79271.006ENSMEUG00000012264-10055.372Notamacropus_eugenii
ENSG00000125445MRPS79979.355ENSOPRG00000012383-10077.273Ochotona_princeps
ENSG00000125445MRPS79276.923ENSOPRG00000011102-10076.923Ochotona_princeps
ENSG00000125445MRPS79990.323ENSODEG00000011018-10083.471Octodon_degus
ENSG00000125445MRPS79983.871ENSODEG00000002831-9877.293Octodon_degus
ENSG00000125445MRPS79970.968ENSONIG00000002249mrps79765.315Oreochromis_niloticus
ENSG00000125445MRPS79974.269ENSOANG00000008324MRPS79969.262Ornithorhynchus_anatinus
ENSG00000125445MRPS79988.387ENSOCUG00000017928MRPS710082.645Oryctolagus_cuniculus
ENSG00000125445MRPS79967.097ENSORLG00000009696mrps79858.475Oryzias_latipes
ENSG00000125445MRPS79967.097ENSORLG00020016869mrps79858.475Oryzias_latipes_hni
ENSG00000125445MRPS79967.097ENSORLG00015006312mrps79858.475Oryzias_latipes_hsok
ENSG00000125445MRPS79968.387ENSOMEG00000013815mrps79959.912Oryzias_melastigma
ENSG00000125445MRPS79990.643ENSOGAG00000008103MRPS710084.711Otolemur_garnettii
ENSG00000125445MRPS79990.323ENSOARG00000010865MRPS710085.537Ovis_aries
ENSG00000125445MRPS710099.174ENSPPAG00000022323MRPS710099.174Pan_paniscus
ENSG00000125445MRPS75978.218ENSPPRG00000023292-6975.000Panthera_pardus
ENSG00000125445MRPS79990.323ENSPPRG00000000887-10085.950Panthera_pardus
ENSG00000125445MRPS79990.323ENSPTIG00000017217MRPS710085.950Panthera_tigris_altaica
ENSG00000125445MRPS710099.631ENSPTRG00000009639MRPS710099.631Pan_troglodytes
ENSG00000125445MRPS710093.802ENSPANG00000034566MRPS710093.802Papio_anubis
ENSG00000125445MRPS79970.968ENSPKIG00000005942mrps79963.596Paramormyrops_kingsleyae
ENSG00000125445MRPS79974.839ENSPSIG00000008421MRPS710070.698Pelodiscus_sinensis
ENSG00000125445MRPS79967.097ENSPMGG00000018194mrps79762.162Periophthalmus_magnuspinnatus
ENSG00000125445MRPS79987.097ENSPEMG00000019065Mrps710083.884Peromyscus_maniculatus_bairdii
ENSG00000125445MRPS79978.710ENSPCIG00000004824MRPS710071.901Phascolarctos_cinereus
ENSG00000125445MRPS79965.806ENSPFOG00000012113mrps79761.712Poecilia_formosa
ENSG00000125445MRPS79965.806ENSPLAG00000014044mrps79761.712Poecilia_latipinna
ENSG00000125445MRPS79965.161ENSPMEG00000015747mrps79261.261Poecilia_mexicana
ENSG00000125445MRPS79965.161ENSPREG00000002161mrps79761.261Poecilia_reticulata
ENSG00000125445MRPS79998.246ENSPPYG00000008623MRPS79796.694Pongo_abelii
ENSG00000125445MRPS79991.613ENSPCAG00000015942MRPS710086.777Procavia_capensis
ENSG00000125445MRPS79992.398ENSPCOG00000014568MRPS710090.654Propithecus_coquereli
ENSG00000125445MRPS79990.643ENSPVAG00000008433MRPS710085.950Pteropus_vampyrus
ENSG00000125445MRPS79970.323ENSPNYG00000014800mrps79764.865Pundamilia_nyererei
ENSG00000125445MRPS79973.548ENSPNAG00000018705mrps79965.198Pygocentrus_nattereri
ENSG00000125445MRPS79988.387ENSRNOG00000003797Mrps710084.711Rattus_norvegicus
ENSG00000125445MRPS710095.041ENSRBIG00000030896MRPS710095.041Rhinopithecus_bieti
ENSG00000125445MRPS710095.041ENSRROG00000028554MRPS710095.041Rhinopithecus_roxellana
ENSG00000125445MRPS710089.338ENSSBOG00000030197MRPS710089.338Saimiri_boliviensis_boliviensis
ENSG00000125445MRPS79978.065ENSSHAG00000018455MRPS79670.661Sarcophilus_harrisii
ENSG00000125445MRPS79970.323ENSSFOG00015006856mrps79963.596Scleropages_formosus
ENSG00000125445MRPS79967.097ENSSMAG00000013503mrps79961.842Scophthalmus_maximus
ENSG00000125445MRPS79966.452ENSSDUG00000002719mrps79960.793Seriola_dumerili
ENSG00000125445MRPS79965.806ENSSLDG00000025604mrps79960.352Seriola_lalandi_dorsalis
ENSG00000125445MRPS710060.331ENSSARG00000002976MRPS710060.331Sorex_araneus
ENSG00000125445MRPS79972.258ENSSPUG00000009313MRPS79268.203Sphenodon_punctatus
ENSG00000125445MRPS79967.742ENSSPAG00000014729mrps79959.031Stegastes_partitus
ENSG00000125445MRPS79991.813ENSSSCG00000035134MRPS710088.017Sus_scrofa
ENSG00000125445MRPS79974.839ENSTGUG00000008655MRPS710068.372Taeniopygia_guttata
ENSG00000125445MRPS79967.742ENSTRUG00000010937mrps79762.162Takifugu_rubripes
ENSG00000125445MRPS79969.677ENSTNIG00000011939mrps79764.414Tetraodon_nigroviridis
ENSG00000125445MRPS78887.681ENSTBEG00000003880MRPS710087.681Tupaia_belangeri
ENSG00000125445MRPS79989.677ENSTTRG00000014421MRPS79984.298Tursiops_truncatus
ENSG00000125445MRPS79991.228ENSUAMG00000010519MRPS78885.950Ursus_americanus
ENSG00000125445MRPS79991.228ENSUMAG00000008652MRPS78886.364Ursus_maritimus
ENSG00000125445MRPS76790.411ENSVPAG00000011849MRPS76890.411Vicugna_pacos
ENSG00000125445MRPS79990.643ENSVVUG00000011263MRPS710085.950Vulpes_vulpes
ENSG00000125445MRPS79968.387ENSXETG00000012510mrps79764.159Xenopus_tropicalis
ENSG00000125445MRPS79966.452ENSXCOG00000000231mrps79762.162Xiphophorus_couchianus
ENSG00000125445MRPS79966.452ENSXMAG00000023257mrps79362.162Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000028ribosomal small subunit assembly21873635.IBAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0003735structural constituent of ribosome-ISSFunction
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005763mitochondrial small ribosomal subunit21873635.IBAComponent
GO:0005763mitochondrial small ribosomal subunit25838379.IDAComponent
GO:0005763mitochondrial small ribosomal subunit-ISSComponent
GO:0006412translation21873635.IBAProcess
GO:0019843rRNA binding21873635.IBAFunction
GO:0032543mitochondrial translation-ISSProcess
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess

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