EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000125676 (Gene tree)
Gene ID
57187
Gene Symbol
THOC2
Alias
THO2|dJ506G2.1|CXorf3|MRX12|MRX35
Full Name
THO complex 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
132,496 bases
Position
chrX:123,600,561-123,733,056
Accession
19073
RBP type
canonical RBP
Summary
The TREX multiprotein complex binds specifically to spliced mRNAs to facilitate mRNA export. The protein encoded by this gene is a member of the THO complex, a subset of the TREX complex. The encoded protein interacts with the THOC1 protein.[provided by RefSeq, Jun 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000419795Tho2PF11262.81e-10311
ENSP00000245838Tho2PF11262.81.1e-10311
ENSP00000347959Tho2PF11262.81.1e-10311
ENSP00000416639Tho2PF11262.81.7e-8211
ENSP00000419795Thoc2PF11732.82.6e-3611
ENSP00000245838Thoc2PF11732.83e-3611
ENSP00000347959Thoc2PF11732.83e-3611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
26166480THOC2 Mutations Implicate mRNA-Export Pathway in X-Linked Intellectual Disability.Am J Hum Genet2015 Aug 6Kumar Rdoi: 10.1016/j.ajhg.2015.05.021
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000455053THOC2-210573-ENSP0000040216884 (aa)-B7ZB98
ENST00000433883THOC2-206876-ENSP00000415374120 (aa)-F2Z2V2
ENST00000441692THOC2-2084364-ENSP00000415211388 (aa)-H0Y7U4
ENST00000355725THOC2-2024930-ENSP000003479591593 (aa)-Q8NI27
ENST00000464992THOC2-215902--- (aa)--
ENST00000464982THOC2-214398--- (aa)--
ENST00000618150THOC2-2203211-ENSP00000480478414 (aa)-Q8NI27
ENST00000245838THOC2-2015609XM_017029662ENSP000002458381593 (aa)XP_016885151Q8NI27
ENST00000497887THOC2-219768--- (aa)--
ENST00000492203THOC2-217641--- (aa)--
ENST00000491737THOC2-2164452-ENSP000004197951478 (aa)-A0A0C4DG98
ENST00000438358THOC2-2071137-ENSP00000416639379 (aa)-H0Y815
ENST00000419789THOC2-204229--- (aa)--
ENST00000464161THOC2-212660--- (aa)--
ENST00000432353THOC2-2053188-ENSP00000415947165 (aa)-H7C477
ENST00000448128THOC2-2091365-ENSP00000397317189 (aa)-H0Y594
ENST00000416618THOC2-203657-ENSP00000415244180 (aa)-B7ZBA0
ENST00000464604THOC2-213664--- (aa)--
ENST00000459945THOC2-211689--- (aa)--
ENST00000496830THOC2-2181013--- (aa)--
Gene Model
Click here to download ENSG00000125676's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
hsa03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000125676's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000125676THOC210075.539ENSAPOG00000003459thoc29975.419Acanthochromis_polyacanthus
ENSG00000125676THOC210098.496ENSAMEG00000014841THOC210098.496Ailuropoda_melanoleuca
ENSG00000125676THOC29674.795ENSACIG00000015022thoc29973.733Amphilophus_citrinellus
ENSG00000125676THOC29873.778ENSAOCG00000013305thoc29874.290Amphiprion_ocellaris
ENSG00000125676THOC29873.865ENSAPEG00000004792thoc29874.290Amphiprion_percula
ENSG00000125676THOC29974.746ENSATEG00000013110thoc29973.691Anabas_testudineus
ENSG00000125676THOC29986.667ENSAPLG00000010614THOC210087.179Anas_platyrhynchos
ENSG00000125676THOC29986.145ENSACAG00000011585THOC29985.812Anolis_carolinensis
ENSG00000125676THOC210096.677ENSANAG00000022505-10096.677Aotus_nancymaae
ENSG00000125676THOC29998.780ENSANAG00000034037-9994.692Aotus_nancymaae
ENSG00000125676THOC29871.997ENSACLG00000012036thoc210069.968Astatotilapia_calliptera
ENSG00000125676THOC29973.370ENSAMXG00000014184thoc29972.555Astyanax_mexicanus
ENSG00000125676THOC29896.151ENSBTAG00000047341-9896.151Bos_taurus
ENSG00000125676THOC210098.807ENSBTAG00000008388THOC210098.807Bos_taurus
ENSG00000125676THOC28634.875WBGene00015813thoc-27934.801Caenorhabditis_elegans
ENSG00000125676THOC210098.493ENSCJAG00000016157THOC210098.493Callithrix_jacchus
ENSG00000125676THOC210098.996ENSCAFG00000018574THOC210098.996Canis_familiaris
ENSG00000125676THOC29998.172ENSCAFG00020002284THOC29998.172Canis_lupus_dingo
ENSG00000125676THOC29896.743ENSCHIG00000025851-9996.665Capra_hircus
ENSG00000125676THOC29997.982ENSCHIG00000017733-9997.982Capra_hircus
ENSG00000125676THOC210097.841ENSTSYG00000012292THOC210096.431Carlito_syrichta
ENSG00000125676THOC29996.341ENSCPOG00000038670THOC29995.712Cavia_porcellus
ENSG00000125676THOC210099.561ENSCCAG00000021906THOC210099.561Cebus_capucinus
ENSG00000125676THOC2100100.000ENSCATG00000003183THOC210099.937Cercocebus_atys
ENSG00000125676THOC210098.682ENSCLAG00000002641THOC210098.682Chinchilla_lanigera
ENSG00000125676THOC2100100.000ENSCSAG00000018332THOC210099.937Chlorocebus_sabaeus
ENSG00000125676THOC29985.763ENSCPBG00000012863THOC29889.905Chrysemys_picta_bellii
ENSG00000125676THOC27562.937ENSCING00000007364-9958.621Ciona_intestinalis
ENSG00000125676THOC27562.937ENSCSAVG00000007923-9976.882Ciona_savignyi
ENSG00000125676THOC2100100.000ENSCANG00000035077THOC210099.937Colobus_angolensis_palliatus
ENSG00000125676THOC210094.941ENSCGRG00001015509Thoc210094.941Cricetulus_griseus_chok1gshd
ENSG00000125676THOC210090.647ENSCGRG00001009811BC0055619890.272Cricetulus_griseus_chok1gshd
ENSG00000125676THOC29993.814ENSCGRG00000001226Thoc29994.050Cricetulus_griseus_crigri
ENSG00000125676THOC210090.709ENSCGRG00000000980BC0055619990.335Cricetulus_griseus_crigri
ENSG00000125676THOC29674.521ENSCSEG00000019946thoc29974.117Cynoglossus_semilaevis
ENSG00000125676THOC29972.880ENSCVAG00000021509thoc29971.429Cyprinodon_variegatus
ENSG00000125676THOC29976.216ENSDARG00000037503thoc29974.811Danio_rerio
ENSG00000125676THOC29997.707ENSDNOG00000012487THOC210096.062Dasypus_novemcinctus
ENSG00000125676THOC29741.882FBgn0031390tho27348.000Drosophila_melanogaster
ENSG00000125676THOC295100.000ENSETEG00000016183THOC295100.000Echinops_telfairi
ENSG00000125676THOC29998.984ENSEASG00005017399THOC210099.075Equus_asinus_asinus
ENSG00000125676THOC210098.870ENSECAG00000010431THOC210099.043Equus_caballus
ENSG00000125676THOC29994.118ENSEEUG00000015598THOC27899.029Erinaceus_europaeus
ENSG00000125676THOC29678.082ENSELUG00000007778thoc29875.242Esox_lucius
ENSG00000125676THOC210098.933ENSFCAG00000008301THOC210098.933Felis_catus
ENSG00000125676THOC29986.693ENSFALG00000001519THOC29985.883Ficedula_albicollis
ENSG00000125676THOC29998.936ENSFDAG00000017237THOC210098.790Fukomys_damarensis
ENSG00000125676THOC29972.200ENSFHEG00000001695thoc29970.492Fundulus_heteroclitus
ENSG00000125676THOC29574.444ENSGMOG00000000069thoc29969.582Gadus_morhua
ENSG00000125676THOC29188.379ENSGALG00000008507THOC29987.077Gallus_gallus
ENSG00000125676THOC29972.978ENSGAFG00000005902thoc210071.768Gambusia_affinis
ENSG00000125676THOC29971.583ENSGACG00000020367thoc29970.696Gasterosteus_aculeatus
ENSG00000125676THOC29986.739ENSGAGG00000024263THOC29986.893Gopherus_agassizii
ENSG00000125676THOC2100100.000ENSGGOG00000000486THOC2100100.000Gorilla_gorilla
ENSG00000125676THOC29674.932ENSHBUG00000003516thoc29974.797Haplochromis_burtoni
ENSG00000125676THOC210097.365ENSHGLG00000004222THOC210097.365Heterocephalus_glaber_female
ENSG00000125676THOC29797.126ENSHGLG00100011595THOC29397.724Heterocephalus_glaber_male
ENSG00000125676THOC29972.444ENSHCOG00000006276thoc29971.992Hippocampus_comes
ENSG00000125676THOC29974.696ENSIPUG00000015876thoc29972.347Ictalurus_punctatus
ENSG00000125676THOC210098.620ENSSTOG00000009134THOC210098.620Ictidomys_tridecemlineatus
ENSG00000125676THOC210096.926ENSJJAG00000017282Thoc210096.926Jaculus_jaculus
ENSG00000125676THOC29989.581ENSJJAG00000008784BC0055619989.457Jaculus_jaculus
ENSG00000125676THOC29675.204ENSKMAG00000012263thoc29876.337Kryptolebias_marmoratus
ENSG00000125676THOC210074.228ENSLBEG00000003049thoc29875.142Labrus_bergylta
ENSG00000125676THOC29885.034ENSLACG00000016494THOC29983.226Latimeria_chalumnae
ENSG00000125676THOC29981.233ENSLOCG00000014546thoc29980.278Lepisosteus_oculatus
ENSG00000125676THOC29999.468ENSLAFG00000003146THOC210098.054Loxodonta_africana
ENSG00000125676THOC2100100.000ENSMFAG00000042215THOC210099.937Macaca_fascicularis
ENSG00000125676THOC2100100.000ENSMMUG00000003745THOC210099.937Macaca_mulatta
ENSG00000125676THOC2100100.000ENSMNEG00000033627THOC210099.937Macaca_nemestrina
ENSG00000125676THOC2100100.000ENSMLEG00000034817THOC210099.937Mandrillus_leucophaeus
ENSG00000125676THOC29873.529ENSMAMG00000012993thoc29872.678Mastacembelus_armatus
ENSG00000125676THOC29975.439ENSMZEG00005015842thoc29974.228Maylandia_zebra
ENSG00000125676THOC29986.945ENSMGAG00000007345THOC210086.240Meleagris_gallopavo
ENSG00000125676THOC210097.051ENSMAUG00000002356Thoc210097.051Mesocricetus_auratus
ENSG00000125676THOC210098.870ENSMICG00000011840THOC210098.870Microcebus_murinus
ENSG00000125676THOC210096.926ENSMOCG00000009946Thoc210096.926Microtus_ochrogaster
ENSG00000125676THOC210088.952ENSMOCG00000019406BC0055619989.514Microtus_ochrogaster
ENSG00000125676THOC29674.659ENSMMOG00000016313thoc29675.280Mola_mola
ENSG00000125676THOC29987.147ENSMODG00000014984THOC29986.298Monodelphis_domestica
ENSG00000125676THOC29872.565ENSMALG00000019718thoc29969.975Monopterus_albus
ENSG00000125676THOC210097.428MGP_CAROLIEiJ_G0033023Thoc210097.428Mus_caroli
ENSG00000125676THOC210089.586MGP_CAROLIEiJ_G0027482BC0055619989.071Mus_caroli
ENSG00000125676THOC210097.428ENSMUSG00000037475Thoc210097.428Mus_musculus
ENSG00000125676THOC210089.962ENSMUSG00000079065BC0055619989.514Mus_musculus
ENSG00000125676THOC210089.962MGP_PahariEiJ_G0017260BC0055619989.640Mus_pahari
ENSG00000125676THOC210097.491MGP_PahariEiJ_G0031569Thoc210097.491Mus_pahari
ENSG00000125676THOC210090.088MGP_SPRETEiJ_G0028479BC0055619989.640Mus_spretus
ENSG00000125676THOC210097.428MGP_SPRETEiJ_G0034181Thoc210097.428Mus_spretus
ENSG00000125676THOC210098.501ENSMPUG00000001357THOC210098.501Mustela_putorius_furo
ENSG00000125676THOC28994.527ENSMLUG00000027559-9992.308Myotis_lucifugus
ENSG00000125676THOC29997.907ENSMLUG00000013656-10097.839Myotis_lucifugus
ENSG00000125676THOC29586.131ENSMLUG00000026072-9986.391Myotis_lucifugus
ENSG00000125676THOC29482.484ENSMLUG00000028256-9981.654Myotis_lucifugus
ENSG00000125676THOC210090.647ENSNGAG00000010936BC0055619989.829Nannospalax_galili
ENSG00000125676THOC210096.438ENSNGAG00000016184Thoc210096.438Nannospalax_galili
ENSG00000125676THOC29674.659ENSNBRG00000018089thoc29973.389Neolamprologus_brichardi
ENSG00000125676THOC29999.390ENSNLEG00000015055THOC210093.022Nomascus_leucogenys
ENSG00000125676THOC29383.799ENSMEUG00000003533THOC28091.045Notamacropus_eugenii
ENSG00000125676THOC26895.902ENSOPRG00000018222-52100.000Ochotona_princeps
ENSG00000125676THOC210098.745ENSODEG00000002478THOC210098.745Octodon_degus
ENSG00000125676THOC210075.370ENSONIG00000004348thoc29973.850Oreochromis_niloticus
ENSG00000125676THOC29987.273ENSOANG00000004054THOC29987.700Ornithorhynchus_anatinus
ENSG00000125676THOC210097.803ENSOCUG00000005996THOC210097.803Oryctolagus_cuniculus
ENSG00000125676THOC29974.328ENSORLG00000008692thoc29973.866Oryzias_latipes
ENSG00000125676THOC29972.282ENSORLG00020002321thoc29972.419Oryzias_latipes_hni
ENSG00000125676THOC29973.522ENSORLG00015000665thoc29974.650Oryzias_latipes_hsok
ENSG00000125676THOC29974.628ENSOMEG00000004006thoc29973.624Oryzias_melastigma
ENSG00000125676THOC210098.619ENSOGAG00000000302THOC210098.619Otolemur_garnettii
ENSG00000125676THOC29999.468ENSOARG00000013665-10098.917Ovis_aries
ENSG00000125676THOC29793.966ENSOARG00000003614-9395.312Ovis_aries
ENSG00000125676THOC299100.000ENSPPAG00000040720THOC29999.568Pan_paniscus
ENSG00000125676THOC210098.870ENSPPRG00000023137THOC210098.870Panthera_pardus
ENSG00000125676THOC29998.404ENSPTIG00000006983THOC210096.422Panthera_tigris_altaica
ENSG00000125676THOC2100100.000ENSPTRG00000022246THOC210099.937Pan_troglodytes
ENSG00000125676THOC29999.390ENSPANG00000004038THOC210097.139Papio_anubis
ENSG00000125676THOC210077.875ENSPKIG00000021719thoc29874.118Paramormyrops_kingsleyae
ENSG00000125676THOC29986.248ENSPSIG00000015352THOC29886.596Pelodiscus_sinensis
ENSG00000125676THOC29672.727ENSPMGG00000002688thoc29967.424Periophthalmus_magnuspinnatus
ENSG00000125676THOC210091.086ENSPEMG00000011125BC0055619990.714Peromyscus_maniculatus_bairdii
ENSG00000125676THOC210096.865ENSPEMG00000007626Thoc210096.865Peromyscus_maniculatus_bairdii
ENSG00000125676THOC29964.375ENSPMAG00000007219-9875.954Petromyzon_marinus
ENSG00000125676THOC26291.758ENSPCIG00000007574THOC29991.613Phascolarctos_cinereus
ENSG00000125676THOC29974.169ENSPFOG00000019556thoc29972.911Poecilia_formosa
ENSG00000125676THOC29972.880ENSPLAG00000005761thoc29970.629Poecilia_latipinna
ENSG00000125676THOC29972.831ENSPMEG00000002951thoc29970.917Poecilia_mexicana
ENSG00000125676THOC29974.831ENSPREG00000021746thoc29973.346Poecilia_reticulata
ENSG00000125676THOC2100100.000ENSPPYG00000020695THOC2100100.000Pongo_abelii
ENSG00000125676THOC29793.103ENSPCAG00000005402THOC210083.574Procavia_capensis
ENSG00000125676THOC29997.561ENSPCOG00000001806THOC29994.780Propithecus_coquereli
ENSG00000125676THOC210097.991ENSPVAG00000006132THOC210097.991Pteropus_vampyrus
ENSG00000125676THOC29674.932ENSPNYG00000019622thoc210070.471Pundamilia_nyererei
ENSG00000125676THOC29971.140ENSPNAG00000020593thoc29970.031Pygocentrus_nattereri
ENSG00000125676THOC210097.491ENSRNOG00000007315Thoc210097.491Rattus_norvegicus
ENSG00000125676THOC210090.464ENSRNOG00000042340LOC6798949990.208Rattus_norvegicus
ENSG00000125676THOC29192.442ENSRBIG00000044129THOC29994.611Rhinopithecus_bieti
ENSG00000125676THOC2100100.000ENSRROG00000041515THOC210099.937Rhinopithecus_roxellana
ENSG00000125676THOC210099.561ENSSBOG00000007245THOC210099.561Saimiri_boliviensis_boliviensis
ENSG00000125676THOC29987.053ENSSHAG00000015987THOC210087.048Sarcophilus_harrisii
ENSG00000125676THOC210076.732ENSSFOG00015010127thoc29878.853Scleropages_formosus
ENSG00000125676THOC210078.514ENSSFOG00015004767THOC29977.666Scleropages_formosus
ENSG00000125676THOC210074.933ENSSMAG00000016574thoc29973.976Scophthalmus_maximus
ENSG00000125676THOC210075.472ENSSDUG00000012815thoc29975.474Seriola_dumerili
ENSG00000125676THOC210075.270ENSSLDG00000015816thoc29974.325Seriola_lalandi_dorsalis
ENSG00000125676THOC29998.396ENSSARG00000005799THOC210090.771Sorex_araneus
ENSG00000125676THOC210085.307ENSSPUG00000012889THOC29986.035Sphenodon_punctatus
ENSG00000125676THOC29675.477ENSSPAG00000023593thoc29376.958Stegastes_partitus
ENSG00000125676THOC210098.870ENSSSCG00000012639THOC210098.969Sus_scrofa
ENSG00000125676THOC29988.187ENSTGUG00000003682THOC210088.451Taeniopygia_guttata
ENSG00000125676THOC29971.981ENSTRUG00000015122thoc29971.023Takifugu_rubripes
ENSG00000125676THOC29771.968ENSTNIG00000011794thoc29968.817Tetraodon_nigroviridis
ENSG00000125676THOC29188.338ENSTBEG00000004420-10089.025Tupaia_belangeri
ENSG00000125676THOC29190.962ENSTBEG00000005854-6099.174Tupaia_belangeri
ENSG00000125676THOC29997.872ENSTTRG00000002762THOC210092.833Tursiops_truncatus
ENSG00000125676THOC29998.222ENSUAMG00000008780THOC29899.285Ursus_americanus
ENSG00000125676THOC29988.329ENSUMAG00000024014THOC29993.794Ursus_maritimus
ENSG00000125676THOC210099.256ENSVPAG00000006247THOC210099.256Vicugna_pacos
ENSG00000125676THOC29998.172ENSVVUG00000028282THOC29998.172Vulpes_vulpes
ENSG00000125676THOC29981.077ENSXETG00000016195thoc29990.554Xenopus_tropicalis
ENSG00000125676THOC29972.942ENSXCOG00000006301thoc210071.548Xiphophorus_couchianus
ENSG00000125676THOC29972.874ENSXMAG00000011604thoc210071.548Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000346transcription export complex15833825.15998806.IDAComponent
GO:0000347THO complex15998806.IDAComponent
GO:0000445THO complex part of transcription export complex21873635.IBAComponent
GO:0000445THO complex part of transcription export complex15998806.IDAComponent
GO:0000784nuclear chromosome, telomeric region24270157.IDAComponent
GO:0003729mRNA binding21873635.IBAFunction
GO:0005515protein binding15870275.22928037.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0006405RNA export from nucleus-TASProcess
GO:0006406mRNA export from nucleus21873635.IBAProcess
GO:0006406mRNA export from nucleus17190602.IDAProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0008380RNA splicing-IEAProcess
GO:0016607nuclear speck-IEAComponent
GO:0016973poly(A)+ mRNA export from nucleus22928037.IDAProcess
GO:0031124mRNA 3'-end processing-TASProcess
GO:0046784viral mRNA export from host cell nucleus18974867.IDAProcess
GO:0048666neuron development26166480.IMPProcess
GO:0048699generation of neurons26166480.IMPProcess

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