EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000125755 (Gene tree)
Gene ID
8189
Gene Symbol
SYMPK
Alias
SYM|SPK
Full Name
symplekin
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
47,881 bases
Position
chr19:45,815,410-45,863,290
Accession
22935
RBP type
canonical RBP
Summary
This gene encodes a nuclear protein that functions in the regulation of polyadenylation and promotes gene expression. The protein forms a high-molecular weight complex with components of the polyadenylation machinery. It is thought to serve as a scaffold for recruiting regulatory factors to the polyadenylation complex. It also participates in 3'-end maturation of histone mRNAs, which do not undergo polyadenylation. The protein also localizes to the cytoplasmic plaques of tight junctions in some cell types. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000245934Symplekin_CPF12295.81.9e-7311
ENSP00000478599Symplekin_CPF12295.84.6e-1911
ENSP00000479480Symplekin_CPF12295.84.6e-1911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
25921069Global Promotion of Alternative Internal Exon Usage by mRNA 3' End Formation Factors.Mol Cell2015 Jun 4Misra Adoi: 10.1016/j.molcel.2015.03.016
18158581Protein factors in pre-mRNA 3'-end processing.Cell Mol Life Sci2008 AprMandel CR-
20634199The 68 kDa subunit of mammalian cleavage factor I interacts with the U7 small nuclear ribonucleoprotein and participates in 3'-end processing of animal histone mRNAs.Nucleic Acids Res2010 NovRuepp MDdoi: 10.1093/nar/gkq613
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000596518SYMPK-206592--- (aa)--
ENST00000594293SYMPK-205623-ENSP00000471770115 (aa)-M0R1C2
ENST00000600237SYMPK-2155164-ENSP00000473136673 (aa)-M0R3C7
ENST00000601600SYMPK-217560-ENSP0000047097750 (aa)-M0R039
ENST00000599814SYMPK-2146537-ENSP000004785991058 (aa)-A0A087WUE9
ENST00000593899SYMPK-203558--- (aa)--
ENST00000593959SYMPK-204546--- (aa)--
ENST00000602061SYMPK-218503-ENSP00000469296142 (aa)-M0QXP5
ENST00000599460SYMPK-2135449-ENSP000004794801058 (aa)-A0A087WUE9
ENST00000598364SYMPK-211995--- (aa)--
ENST00000598155SYMPK-2091603--- (aa)--
ENST00000601582SYMPK-216544--- (aa)--
ENST00000593504SYMPK-2025107--- (aa)--
ENST00000598059SYMPK-208611-ENSP00000471694137 (aa)-M0R180
ENST00000598896SYMPK-2121899--- (aa)--
ENST00000596824SYMPK-207653-ENSP0000047095795 (aa)-M0R033
ENST00000245934SYMPK-2014195XM_005259286ENSP000002459341274 (aa)XP_005259343Q92797
ENST00000598329SYMPK-2101000--- (aa)--
Gene Model
Click here to download ENSG00000125755's gene model file
Pathways
Pathway IDPathway NameSource
hsa03015mRNA surveillance pathwayKEGG
hsa04530Tight junctionKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000125755Colonic Neoplasms5E-728295283
ENSG00000125755Colorectal Neoplasms9E-728295283
ENSG00000125755Colonic Neoplasms2E-828295283
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000125755rs568489361945818249AColon cancer28295283[1.37-1.92]1.64EFO_0004288
ENSG00000125755rs568489361945818249AColon cancer28295283[1.43-2.22]1.79EFO_0004288
ENSG00000125755rs568489361945818249AColorectal cancer28295283[1.25-1.69]1.45EFO_0005842
ENSG00000125755rs767931721945856536TEosinophil counts27863252[0.04-0.065] unit decrease0.05245408EFO_0004842
ENSG00000125755rs81028761945829584?Systolic blood pressure30595370EFO_0006335
ENSG00000125755rs621098541945847117?Eosinophil counts30595370EFO_0004842
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000125755's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000125755SYMPK8383.051ENSAPOG00000015934sympk9773.870Acanthochromis_polyacanthus
ENSG00000125755SYMPK10098.592ENSAMEG00000000680SYMPK10097.096Ailuropoda_melanoleuca
ENSG00000125755SYMPK8181.818ENSACIG00000006357sympk9274.840Amphilophus_citrinellus
ENSG00000125755SYMPK9177.907ENSAOCG00000024124sympk9274.656Amphiprion_ocellaris
ENSG00000125755SYMPK9177.907ENSAPEG00000003465sympk9074.301Amphiprion_percula
ENSG00000125755SYMPK8778.906ENSATEG00000008472sympk9174.350Anabas_testudineus
ENSG00000125755SYMPK8393.671ENSACAG00000004126SYMPK9978.956Anolis_carolinensis
ENSG00000125755SYMPK10099.296ENSANAG00000021087SYMPK10099.200Aotus_nancymaae
ENSG00000125755SYMPK8878.906ENSACLG00000001813sympk9174.506Astatotilapia_calliptera
ENSG00000125755SYMPK10075.352ENSAMXG00000013677sympk9273.810Astyanax_mexicanus
ENSG00000125755SYMPK10098.592ENSBTAG00000012101SYMPK10096.468Bos_taurus
ENSG00000125755SYMPK9030.294WBGene00017797symk-18030.541Caenorhabditis_elegans
ENSG00000125755SYMPK10099.296ENSCJAG00000012172SYMPK9997.460Callithrix_jacchus
ENSG00000125755SYMPK10098.592ENSCAFG00000004376SYMPK10097.338Canis_familiaris
ENSG00000125755SYMPK10098.592ENSCAFG00020001815SYMPK10097.338Canis_lupus_dingo
ENSG00000125755SYMPK10098.592ENSCHIG00000026784SYMPK10096.939Capra_hircus
ENSG00000125755SYMPK10098.592ENSTSYG00000006268SYMPK9996.873Carlito_syrichta
ENSG00000125755SYMPK10099.296ENSCAPG00000005112SYMPK9695.403Cavia_aperea
ENSG00000125755SYMPK10099.296ENSCPOG00000010434SYMPK10091.660Cavia_porcellus
ENSG00000125755SYMPK10099.296ENSCCAG00000036309SYMPK10099.200Cebus_capucinus
ENSG00000125755SYMPK100100.000ENSCATG00000045107SYMPK100100.000Cercocebus_atys
ENSG00000125755SYMPK100100.000ENSCLAG00000001206SYMPK10096.627Chinchilla_lanigera
ENSG00000125755SYMPK100100.000ENSCSAG00000003115SYMPK10099.294Chlorocebus_sabaeus
ENSG00000125755SYMPK9392.834ENSCHOG00000012456SYMPK81100.000Choloepus_hoffmanni
ENSG00000125755SYMPK10088.811ENSCPBG00000007170SYMPK9884.455Chrysemys_picta_bellii
ENSG00000125755SYMPK8068.421ENSCING00000021232-9649.153Ciona_intestinalis
ENSG00000125755SYMPK8067.105ENSCSAVG00000005154-10048.071Ciona_savignyi
ENSG00000125755SYMPK100100.000ENSCANG00000040907SYMPK100100.000Colobus_angolensis_palliatus
ENSG00000125755SYMPK10099.296ENSCGRG00001010086Sympk10091.713Cricetulus_griseus_chok1gshd
ENSG00000125755SYMPK8679.508ENSCSEG00000016802sympk9174.170Cynoglossus_semilaevis
ENSG00000125755SYMPK8183.117ENSCVAG00000015093sympk8173.902Cyprinodon_variegatus
ENSG00000125755SYMPK9081.250ENSDARG00000059553sympk8874.091Danio_rerio
ENSG00000125755SYMPK10097.183ENSDNOG00000016149SYMPK9895.501Dasypus_novemcinctus
ENSG00000125755SYMPK9634.058FBgn0037371Sym9536.729Drosophila_melanogaster
ENSG00000125755SYMPK6495.082ENSETEG00000015995-5495.541Echinops_telfairi
ENSG00000125755SYMPK8177.922ENSEBUG00000000387sympk8962.558Eptatretus_burgeri
ENSG00000125755SYMPK10098.592ENSEASG00005014227SYMPK10097.176Equus_asinus_asinus
ENSG00000125755SYMPK10098.592ENSECAG00000008163SYMPK10097.176Equus_caballus
ENSG00000125755SYMPK10090.000ENSEEUG00000000270-8193.333Erinaceus_europaeus
ENSG00000125755SYMPK10079.720ENSELUG00000000850sympk8875.380Esox_lucius
ENSG00000125755SYMPK10098.927ENSFCAG00000007337SYMPK10097.331Felis_catus
ENSG00000125755SYMPK10099.296ENSFDAG00000011272SYMPK10096.314Fukomys_damarensis
ENSG00000125755SYMPK8383.898ENSFHEG00000010274sympk9075.000Fundulus_heteroclitus
ENSG00000125755SYMPK8183.117ENSGMOG00000002357sympk9972.970Gadus_morhua
ENSG00000125755SYMPK8580.000ENSGAFG00000010976sympk9175.158Gambusia_affinis
ENSG00000125755SYMPK9275.373ENSGACG00000002735sympk9874.319Gasterosteus_aculeatus
ENSG00000125755SYMPK9682.796ENSGAGG00000012538-8884.885Gopherus_agassizii
ENSG00000125755SYMPK100100.000ENSGGOG00000003410SYMPK9899.608Gorilla_gorilla
ENSG00000125755SYMPK8878.906ENSHBUG00000023564sympk9174.596Haplochromis_burtoni
ENSG00000125755SYMPK10099.296ENSHGLG00000005228SYMPK10091.843Heterocephalus_glaber_female
ENSG00000125755SYMPK10099.296ENSHGLG00100018571SYMPK10091.393Heterocephalus_glaber_male
ENSG00000125755SYMPK8180.519ENSHCOG00000017400sympk9170.394Hippocampus_comes
ENSG00000125755SYMPK10073.239ENSIPUG00000024020SYMPK9073.925Ictalurus_punctatus
ENSG00000125755SYMPK10099.296ENSSTOG00000001534SYMPK10097.017Ictidomys_tridecemlineatus
ENSG00000125755SYMPK10098.592ENSJJAG00000006633Sympk10094.910Jaculus_jaculus
ENSG00000125755SYMPK8683.607ENSKMAG00000016292sympk9870.515Kryptolebias_marmoratus
ENSG00000125755SYMPK8382.278ENSLBEG00000027913sympk9969.980Labrus_bergylta
ENSG00000125755SYMPK10078.621ENSLACG00000016497SYMPK10071.593Latimeria_chalumnae
ENSG00000125755SYMPK10098.592ENSLAFG00000008726SYMPK10096.630Loxodonta_africana
ENSG00000125755SYMPK81100.000ENSMFAG00000030093-9097.605Macaca_fascicularis
ENSG00000125755SYMPK100100.000ENSMMUG00000015428SYMPK100100.000Macaca_mulatta
ENSG00000125755SYMPK100100.000ENSMNEG00000019439SYMPK100100.000Macaca_nemestrina
ENSG00000125755SYMPK100100.000ENSMLEG00000040508SYMPK100100.000Mandrillus_leucophaeus
ENSG00000125755SYMPK8382.203ENSMAMG00000010486sympk9074.345Mastacembelus_armatus
ENSG00000125755SYMPK8878.906ENSMZEG00005014146sympk9174.506Maylandia_zebra
ENSG00000125755SYMPK10099.296ENSMAUG00000015657Sympk10092.338Mesocricetus_auratus
ENSG00000125755SYMPK10098.000ENSMICG00000001871SYMPK10097.600Microcebus_murinus
ENSG00000125755SYMPK10099.296ENSMOCG00000008388Sympk10093.297Microtus_ochrogaster
ENSG00000125755SYMPK8781.818ENSMMOG00000019227sympk9473.073Mola_mola
ENSG00000125755SYMPK9995.035ENSMODG00000021534SYMPK9690.187Monodelphis_domestica
ENSG00000125755SYMPK8869.607ENSMALG00000008347sympk9669.926Monopterus_albus
ENSG00000125755SYMPK10098.592MGP_CAROLIEiJ_G0029267Sympk10093.375Mus_caroli
ENSG00000125755SYMPK10098.592ENSMUSG00000023118Sympk10092.564Mus_musculus
ENSG00000125755SYMPK10099.296MGP_PahariEiJ_G0021127Sympk10094.136Mus_pahari
ENSG00000125755SYMPK10098.592MGP_SPRETEiJ_G0030351-10093.380Mus_spretus
ENSG00000125755SYMPK10098.592ENSMPUG00000005505SYMPK10095.455Mustela_putorius_furo
ENSG00000125755SYMPK8397.468ENSMLUG00000001359SYMPK10092.147Myotis_lucifugus
ENSG00000125755SYMPK10098.592ENSNGAG00000000820Sympk10094.914Nannospalax_galili
ENSG00000125755SYMPK8181.818ENSNBRG00000018101sympk9275.187Neolamprologus_brichardi
ENSG00000125755SYMPK100100.000ENSNLEG00000002369SYMPK10085.927Nomascus_leucogenys
ENSG00000125755SYMPK10092.000ENSMEUG00000003866SYMPK8192.982Notamacropus_eugenii
ENSG00000125755SYMPK10098.592ENSOPRG00000009967SYMPK10093.740Ochotona_princeps
ENSG00000125755SYMPK10099.296ENSODEG00000007519SYMPK10096.471Octodon_degus
ENSG00000125755SYMPK8582.500ENSONIG00000016802sympk9674.234Oreochromis_niloticus
ENSG00000125755SYMPK10098.592ENSOCUG00000005511SYMPK9295.980Oryctolagus_cuniculus
ENSG00000125755SYMPK8581.197ENSORLG00000015338sympk9674.473Oryzias_latipes
ENSG00000125755SYMPK8282.143ENSORLG00020004402sympk9075.572Oryzias_latipes_hni
ENSG00000125755SYMPK8580.328ENSORLG00015005712sympk9075.663Oryzias_latipes_hsok
ENSG00000125755SYMPK8083.186ENSOMEG00000022561sympk9075.276Oryzias_melastigma
ENSG00000125755SYMPK10099.296ENSOGAG00000013483SYMPK10097.488Otolemur_garnettii
ENSG00000125755SYMPK10098.592ENSOARG00000010349SYMPK10091.342Ovis_aries
ENSG00000125755SYMPK100100.000ENSPPAG00000043204SYMPK10099.843Pan_paniscus
ENSG00000125755SYMPK10097.887ENSPPRG00000004282SYMPK10097.331Panthera_pardus
ENSG00000125755SYMPK10097.887ENSPTIG00000015420SYMPK10094.898Panthera_tigris_altaica
ENSG00000125755SYMPK100100.000ENSPTRG00000011169SYMPK10099.843Pan_troglodytes
ENSG00000125755SYMPK100100.000ENSPANG00000019930SYMPK100100.000Papio_anubis
ENSG00000125755SYMPK10081.818ENSPKIG00000017132sympk9672.987Paramormyrops_kingsleyae
ENSG00000125755SYMPK100100.000ENSPEMG00000007564Sympk10093.682Peromyscus_maniculatus_bairdii
ENSG00000125755SYMPK8181.818ENSPMAG00000004936sympk10065.679Petromyzon_marinus
ENSG00000125755SYMPK9995.745ENSPCIG00000024476SYMPK9988.337Phascolarctos_cinereus
ENSG00000125755SYMPK8580.000ENSPFOG00000001194sympk9075.272Poecilia_formosa
ENSG00000125755SYMPK8580.000ENSPLAG00000012995sympk9075.181Poecilia_latipinna
ENSG00000125755SYMPK8580.000ENSPMEG00000008099sympk9075.181Poecilia_mexicana
ENSG00000125755SYMPK8579.167ENSPREG00000006176sympk9075.431Poecilia_reticulata
ENSG00000125755SYMPK100100.000ENSPPYG00000010135SYMPK9999.281Pongo_abelii
ENSG00000125755SYMPK10094.000ENSPCAG00000005182SYMPK9490.738Procavia_capensis
ENSG00000125755SYMPK10098.592ENSPCOG00000023740SYMPK10098.400Propithecus_coquereli
ENSG00000125755SYMPK10097.183ENSPVAG00000001355SYMPK10096.045Pteropus_vampyrus
ENSG00000125755SYMPK8879.688ENSPNYG00000011455sympk9074.686Pundamilia_nyererei
ENSG00000125755SYMPK10081.690ENSPNAG00000016505sympk8975.560Pygocentrus_nattereri
ENSG00000125755SYMPK100100.000ENSRNOG00000014353Sympk10093.765Rattus_norvegicus
ENSG00000125755SYMPK100100.000ENSRBIG00000040963SYMPK100100.000Rhinopithecus_bieti
ENSG00000125755SYMPK100100.000ENSRROG00000024834SYMPK10099.137Rhinopithecus_roxellana
ENSG00000125755SYMPK10099.296ENSSBOG00000034497SYMPK10099.200Saimiri_boliviensis_boliviensis
ENSG00000125755SYMPK9996.491ENSSHAG00000003139SYMPK9991.154Sarcophilus_harrisii
ENSG00000125755SYMPK10081.119ENSSFOG00015006974sympk9076.004Scleropages_formosus
ENSG00000125755SYMPK7987.037ENSSMAG00000018130sympk7274.615Scophthalmus_maximus
ENSG00000125755SYMPK8086.726ENSSDUG00000007092sympk9174.619Seriola_dumerili
ENSG00000125755SYMPK8086.726ENSSLDG00000014774sympk9672.374Seriola_lalandi_dorsalis
ENSG00000125755SYMPK10096.000ENSSARG00000004274-66100.000Sorex_araneus
ENSG00000125755SYMPK10088.276ENSSPUG00000002789SYMPK9682.688Sphenodon_punctatus
ENSG00000125755SYMPK8681.148ENSSPAG00000000854sympk9074.729Stegastes_partitus
ENSG00000125755SYMPK10098.592ENSSSCG00000003093SYMPK10097.174Sus_scrofa
ENSG00000125755SYMPK8783.065ENSTRUG00000010202sympk9174.214Takifugu_rubripes
ENSG00000125755SYMPK8783.065ENSTNIG00000017855sympk9973.590Tetraodon_nigroviridis
ENSG00000125755SYMPK10097.183ENSTBEG00000000454SYMPK8894.805Tupaia_belangeri
ENSG00000125755SYMPK10098.592ENSTTRG00000014311SYMPK10088.706Tursiops_truncatus
ENSG00000125755SYMPK10098.592ENSUAMG00000022272SYMPK10094.431Ursus_americanus
ENSG00000125755SYMPK10098.592ENSUMAG00000023698SYMPK10097.253Ursus_maritimus
ENSG00000125755SYMPK10098.592ENSVVUG00000003024SYMPK9997.627Vulpes_vulpes
ENSG00000125755SYMPK9283.077ENSXETG00000024453sympk9472.743Xenopus_tropicalis
ENSG00000125755SYMPK8181.818ENSXCOG00000015368sympk10074.468Xiphophorus_couchianus
ENSG00000125755SYMPK8580.000ENSXMAG00000005737sympk9075.272Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0005515protein binding14707147.18288197.18688255.20861839.26496610.IPIFunction
GO:0005654nucleoplasm8769423.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005737cytoplasm8769423.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0005856cytoskeleton-IEAComponent
GO:0005886plasma membrane-IDAComponent
GO:0005923bicellular tight junction-IEAComponent
GO:0006369termination of RNA polymerase II transcription-TASProcess
GO:0006378mRNA polyadenylation20861839.IMPProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0007155cell adhesion-IEAProcess
GO:0031124mRNA 3'-end processing-TASProcess
GO:0032091negative regulation of protein binding29158257.IMPProcess
GO:0035307positive regulation of protein dephosphorylation20861839.IDAProcess
GO:0097165nuclear stress granule14707147.IDAComponent

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