EuRBPDB

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000126254 (Gene tree)
Gene ID: 79171
Gene Symbol: RBM42
Alias: MGC10433
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 8,657 bases
Position: chr19:35,629,030-35,637,686
Accession: 28117
RBP type: canonical RBP
Summary: (RNA Binding Motif Protein 42) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000467614	RRM_1	PF00076.22	2.1e-17	1	1
ENSP00000466044	RRM_1	PF00076.22	2.3e-17	1	1
ENSP00000467278	RRM_1	PF00076.22	2.4e-17	1	1
ENSP00000262633	RRM_1	PF00076.22	2.6e-17	1	1
ENSP00000466548	RRM_1	PF00076.22	2.2e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
19170760	hnRNP K interacts with RNA binding motif protein 42 and functions in the maintenance of cellular ATP level during stress conditions.	Genes Cells	2009 Feb	Fukuda T	doi: 10.1111/j.1365-2443.2008.01256.x
29140688	RNA Chemical Proteomics Reveals the N6-Methyladenosine (m6A)-Regulated Protein-RNA Interactome.	J Am Chem Soc	2017 Dec 6	Arguello AE	doi: 10.1021/jacs.7b09213
31142587	c-MYC regulates mRNA translation efficiency and start-site selection in lymphoma.	J Exp Med	2019 Jul 1	Singh K	doi: 10.1084/jem.20181726

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000589559	RBM42-204	1328	-	ENSP00000468060	386 (aa)	-	K7ER08
ENST00000589871	RBM42-205	1487	-	ENSP00000467278	458 (aa)	-	K7EP90
ENST00000588161	RBM42-203	1609	-	ENSP00000466044	450 (aa)	-	Q9BTD8
ENST00000592526	RBM42-207	1012	-	-	- (aa)	-	-
ENST00000262633	RBM42-201	1680	XM_005259257	ENSP00000262633	480 (aa)	XP_005259314	Q9BTD8
ENST00000592202	RBM42-206	1469	-	ENSP00000467614	426 (aa)	-	K7EQ03
ENST00000586618	RBM42-202	771	-	ENSP00000466548	184 (aa)	-	K7EML2

Gene Model

Click here to download ENSG00000126254's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000126254's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000126254	RBM42	100	97.718	ENSAMEG00000000524	RBM42	100	97.718	Ailuropoda_melanoleuca
ENSG00000126254	RBM42	85	95.775	ENSACAG00000005495	RBM42	53	71.698	Anolis_carolinensis
ENSG00000126254	RBM42	100	100.000	ENSANAG00000027537	RBM42	100	100.000	Aotus_nancymaae
ENSG00000126254	RBM42	100	100.000	ENSBTAG00000013440	RBM42	100	98.472	Bos_taurus
ENSG00000126254	RBM42	100	100.000	ENSCJAG00000010220	RBM42	100	100.000	Callithrix_jacchus
ENSG00000126254	RBM42	100	100.000	ENSCAFG00020018628	RBM42	96	100.000	Canis_lupus_dingo
ENSG00000126254	RBM42	100	100.000	ENSCHIG00000009518	RBM42	100	98.004	Capra_hircus
ENSG00000126254	RBM42	100	100.000	ENSTSYG00000014688	RBM42	100	100.000	Carlito_syrichta
ENSG00000126254	RBM42	80	98.446	ENSCAPG00000009566	RBM42	99	98.446	Cavia_aperea
ENSG00000126254	RBM42	100	100.000	ENSCPOG00000012365	RBM42	99	98.004	Cavia_porcellus
ENSG00000126254	RBM42	100	100.000	ENSCCAG00000034440	RBM42	100	100.000	Cebus_capucinus
ENSG00000126254	RBM42	100	100.000	ENSCATG00000041924	RBM42	100	100.000	Cercocebus_atys
ENSG00000126254	RBM42	100	100.000	ENSCLAG00000012865	RBM42	99	97.561	Chinchilla_lanigera
ENSG00000126254	RBM42	100	100.000	ENSCSAG00000004422	RBM42	100	99.557	Chlorocebus_sabaeus
ENSG00000126254	RBM42	100	88.542	ENSCANG00000030272	RBM42	100	88.542	Colobus_angolensis_palliatus
ENSG00000126254	RBM42	100	100.000	ENSCGRG00001018540	Rbm42	99	96.667	Cricetulus_griseus_chok1gshd
ENSG00000126254	RBM42	100	100.000	ENSDNOG00000037397	RBM42	100	96.894	Dasypus_novemcinctus
ENSG00000126254	RBM42	97	100.000	ENSDORG00000013001	Rbm42	99	96.674	Dipodomys_ordii
ENSG00000126254	RBM42	91	92.754	ENSETEG00000007878	RBM42	71	92.857	Echinops_telfairi
ENSG00000126254	RBM42	100	98.004	ENSEASG00005001074	RBM42	100	98.004	Equus_asinus_asinus
ENSG00000126254	RBM42	100	98.004	ENSECAG00000018215	RBM42	100	98.004	Equus_caballus
ENSG00000126254	RBM42	100	100.000	ENSFCAG00000006376	RBM42	100	100.000	Felis_catus
ENSG00000126254	RBM42	100	100.000	ENSFDAG00000007440	RBM42	99	96.468	Fukomys_damarensis
ENSG00000126254	RBM42	73	97.183	ENSGAGG00000014805	RBM42	50	92.086	Gopherus_agassizii
ENSG00000126254	RBM42	100	100.000	ENSGGOG00000009972	RBM42	100	100.000	Gorilla_gorilla
ENSG00000126254	RBM42	100	95.787	ENSHGLG00000008418	RBM42	99	95.787	Heterocephalus_glaber_female
ENSG00000126254	RBM42	100	95.787	ENSHGLG00100018667	RBM42	99	95.787	Heterocephalus_glaber_male
ENSG00000126254	RBM42	100	100.000	ENSSTOG00000013050	RBM42	99	98.448	Ictidomys_tridecemlineatus
ENSG00000126254	RBM42	100	100.000	ENSJJAG00000010421	Rbm42	99	96.452	Jaculus_jaculus
ENSG00000126254	RBM42	98	94.904	ENSLAFG00000014993	RBM42	99	91.667	Loxodonta_africana
ENSG00000126254	RBM42	100	100.000	ENSMFAG00000002758	RBM42	100	100.000	Macaca_fascicularis
ENSG00000126254	RBM42	100	100.000	ENSMMUG00000018954	RBM42	100	100.000	Macaca_mulatta
ENSG00000126254	RBM42	100	100.000	ENSMNEG00000030009	RBM42	100	100.000	Macaca_nemestrina
ENSG00000126254	RBM42	100	100.000	ENSMLEG00000036119	RBM42	100	100.000	Mandrillus_leucophaeus
ENSG00000126254	RBM42	100	100.000	ENSMICG00000009880	RBM42	100	100.000	Microcebus_murinus
ENSG00000126254	RBM42	100	100.000	ENSMOCG00000000405	Rbm42	99	96.458	Microtus_ochrogaster
ENSG00000126254	RBM42	84	100.000	ENSMODG00000013957	RBM42	83	80.738	Monodelphis_domestica
ENSG00000126254	RBM42	100	100.000	MGP_CAROLIEiJ_G0029536	Rbm42	99	97.083	Mus_caroli
ENSG00000126254	RBM42	100	100.000	ENSMUSG00000036733	Rbm42	99	97.083	Mus_musculus
ENSG00000126254	RBM42	100	100.000	MGP_PahariEiJ_G0012770	Rbm42	99	97.083	Mus_pahari
ENSG00000126254	RBM42	100	100.000	MGP_SPRETEiJ_G0030632	Rbm42	99	97.083	Mus_spretus
ENSG00000126254	RBM42	100	98.226	ENSMPUG00000006288	RBM42	100	98.226	Mustela_putorius_furo
ENSG00000126254	RBM42	100	100.000	ENSMLUG00000011334	RBM42	100	96.667	Myotis_lucifugus
ENSG00000126254	RBM42	100	100.000	ENSNGAG00000019698	Rbm42	99	96.250	Nannospalax_galili
ENSG00000126254	RBM42	85	86.066	ENSNLEG00000011272	-	94	92.458	Nomascus_leucogenys
ENSG00000126254	RBM42	96	81.935	ENSMEUG00000016300	RBM42	100	81.224	Notamacropus_eugenii
ENSG00000126254	RBM42	100	100.000	ENSOPRG00000001229	RBM42	100	91.875	Ochotona_princeps
ENSG00000126254	RBM42	100	100.000	ENSODEG00000013705	RBM42	99	97.783	Octodon_degus
ENSG00000126254	RBM42	100	100.000	ENSOCUG00000003337	RBM42	100	98.670	Oryctolagus_cuniculus
ENSG00000126254	RBM42	100	100.000	ENSOGAG00000004144	RBM42	100	97.292	Otolemur_garnettii
ENSG00000126254	RBM42	99	100.000	ENSOARG00000004926	RBM42	98	92.693	Ovis_aries
ENSG00000126254	RBM42	100	100.000	ENSPPAG00000037315	RBM42	100	100.000	Pan_paniscus
ENSG00000126254	RBM42	100	100.000	ENSPPRG00000016784	RBM42	100	100.000	Panthera_pardus
ENSG00000126254	RBM42	100	100.000	ENSPTIG00000019270	RBM42	100	100.000	Panthera_tigris_altaica
ENSG00000126254	RBM42	100	100.000	ENSPTRG00000010852	RBM42	100	100.000	Pan_troglodytes
ENSG00000126254	RBM42	100	100.000	ENSPANG00000017032	RBM42	100	100.000	Papio_anubis
ENSG00000126254	RBM42	100	100.000	ENSPEMG00000012065	Rbm42	99	97.500	Peromyscus_maniculatus_bairdii
ENSG00000126254	RBM42	100	100.000	ENSPCIG00000015737	RBM42	100	81.602	Phascolarctos_cinereus
ENSG00000126254	RBM42	100	100.000	ENSPPYG00000009871	RBM42	100	98.969	Pongo_abelii
ENSG00000126254	RBM42	90	100.000	ENSPCAG00000013053	RBM42	100	84.583	Procavia_capensis
ENSG00000126254	RBM42	100	100.000	ENSPCOG00000026433	-	100	100.000	Propithecus_coquereli
ENSG00000126254	RBM42	97	75.870	ENSPCOG00000020672	RBM42	81	99.099	Propithecus_coquereli
ENSG00000126254	RBM42	100	100.000	ENSPVAG00000012815	RBM42	100	97.708	Pteropus_vampyrus
ENSG00000126254	RBM42	100	100.000	ENSRNOG00000024278	Rbm42	99	97.292	Rattus_norvegicus
ENSG00000126254	RBM42	100	100.000	ENSRBIG00000007566	RBM42	100	100.000	Rhinopithecus_bieti
ENSG00000126254	RBM42	100	100.000	ENSRROG00000042313	RBM42	100	100.000	Rhinopithecus_roxellana
ENSG00000126254	RBM42	90	98.956	ENSSBOG00000030666	RBM42	100	99.754	Saimiri_boliviensis_boliviensis
ENSG00000126254	RBM42	94	76.768	ENSSHAG00000008876	RBM42	58	77.358	Sarcophilus_harrisii
ENSG00000126254	RBM42	100	87.708	ENSSARG00000010724	RBM42	100	87.708	Sorex_araneus
ENSG00000126254	RBM42	100	100.000	ENSSSCG00000002905	RBM42	100	97.418	Sus_scrofa
ENSG00000126254	RBM42	100	100.000	ENSUAMG00000020711	RBM42	100	97.917	Ursus_americanus
ENSG00000126254	RBM42	100	100.000	ENSUMAG00000020223	RBM42	100	97.917	Ursus_maritimus
ENSG00000126254	RBM42	100	100.000	ENSVVUG00000015117	RBM42	100	98.004	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005515	protein binding	25416956.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	IEA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component