EuRBPDB

Description

Ensembl ID: ENSG00000126698 (Gene tree)
Gene ID: 22826
Gene Symbol: DNAJC8
Alias: SPF31
Full Name: DnaJ heat shock protein family (Hsp40) member C8
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 33,576 bases
Position: chr1:28,199,456-28,233,031
Accession: 15470
RBP type: non-canonical RBP
Summary: (DnaJ Heat Shock Protein Family (Hsp40) Member C8) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000489277	DNAJC8-205	1600	-	-	- (aa)	-	-
ENST00000482674	DNAJC8-203	721	-	-	- (aa)	-	-
ENST00000603289	DNAJC8-206	483	-	ENSP00000474440	106 (aa)	-	S4R3J5
ENST00000263697	DNAJC8-201	1759	-	ENSP00000263697	253 (aa)	-	O75937
ENST00000470967	DNAJC8-202	560	-	-	- (aa)	-	-
ENST00000488868	DNAJC8-204	786	-	-	- (aa)	-	-

Gene Model

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000126698	rs11247763	1	28217607	?	Red blood cell count	30595370			EFO_0004305

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000126698	DNAJC8	100	99.209	ENSMUSG00000054405	Dnajc8	100	99.209	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	TAS	Process
GO:0005515	protein binding	28298427.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	27133716.	IDA	Component
GO:0005654	nucleoplasm	-	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005829	cytosol	-	IDA	Component
GO:0030544	Hsp70 protein binding	27133716.	IPI	Function
GO:0045171	intercellular bridge	-	IDA	Component