EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000126746 (Gene tree)
Gene ID
171017
Gene Symbol
ZNF384
Alias
CAGH1A|CIZ|NMP4|NP|TNRC1
Full Name
zinc finger protein 384
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
23,096 bases
Position
chr12:6,666,477-6,689,572
Accession
11955
RBP type
canonical RBP
Summary
This gene encodes a C2H2-type zinc finger protein, which may function as a transcription factor. This gene also contains long CAG trinucleotide repeats that encode consecutive glutamine residues. The protein appears to bind and regulate the promoters of the extracellular matrix genes MMP1, MMP3, MMP7 and COL1A1. Studies in mouse suggest that nuclear matrix transcription factors (NP/NMP4) may be part of a general mechanical pathway that couples cell construction and function during extracellular matrix remodeling. Alternative splicing results in multiple transcript variants. Recurrent rearrangements of this gene with the Ewing's sarcoma gene, EWSR1 on chromosome 22, or with the TAF15 gene on chromosome 17, or with the TCF3 (E2A) gene on chromosome 19, have been observed in acute leukemia. A related pseudogene has been identified on chromosome 7. [provided by RefSeq, Apr 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000354592zf-C2H2PF00096.268.7e-3617
ENSP00000354592zf-C2H2PF00096.268.7e-3627
ENSP00000354592zf-C2H2PF00096.268.7e-3637
ENSP00000354592zf-C2H2PF00096.268.7e-3647
ENSP00000354592zf-C2H2PF00096.268.7e-3657
ENSP00000354592zf-C2H2PF00096.268.7e-3667
ENSP00000354592zf-C2H2PF00096.268.7e-3677
ENSP00000380019zf-C2H2PF00096.268.7e-3617
ENSP00000380019zf-C2H2PF00096.268.7e-3627
ENSP00000380019zf-C2H2PF00096.268.7e-3637
ENSP00000380019zf-C2H2PF00096.268.7e-3647
ENSP00000380019zf-C2H2PF00096.268.7e-3657
ENSP00000380019zf-C2H2PF00096.268.7e-3667
ENSP00000380019zf-C2H2PF00096.268.7e-3677
ENSP00000348018zf-C2H2PF00096.261.1e-2615
ENSP00000348018zf-C2H2PF00096.261.1e-2625
ENSP00000348018zf-C2H2PF00096.261.1e-2635
ENSP00000348018zf-C2H2PF00096.261.1e-2645
ENSP00000348018zf-C2H2PF00096.261.1e-2655
ENSP00000321650zf-C2H2PF00096.262.5e-2615
ENSP00000321650zf-C2H2PF00096.262.5e-2625
ENSP00000321650zf-C2H2PF00096.262.5e-2635
ENSP00000321650zf-C2H2PF00096.262.5e-2645
ENSP00000321650zf-C2H2PF00096.262.5e-2655
ENSP00000399572zf-C2H2PF00096.265e-1613
ENSP00000399572zf-C2H2PF00096.265e-1623
ENSP00000399572zf-C2H2PF00096.265e-1633
ENSP00000412911zf-C2H2PF00096.268.2e-0711
ENSP00000473311zf-C2H2PF00096.265.2e-0611
ENSP00000354592zf-metPF12874.70.0007911
ENSP00000380019zf-metPF12874.70.0007911
ENSP00000348018zf-metPF12874.70.001311

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
16510139Interaction partners for human ZNF384/CIZ/NMP4--zyxin as a mediator for p130CAS signaling?Exp Cell Res2006 Apr 15Janssen H-
30150451An Adult Patient with Early Pre-B Acute Lymphoblastic Leukemia with t(12;17)(p13;q21)/ZNF384-TAF15.In Vivo2018 Sep-OctGeorgakopoulos Ndoi: 10.21873/invivo.11371.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000538829ZNF384-210506-ENSP00000441408127 (aa)-F5GYZ1
ENST00000355772ZNF384-2022514XM_017018948ENSP00000348018461 (aa)XP_016874437Q8TF68
ENST00000537383ZNF384-209672--- (aa)--
ENST00000361959ZNF384-2032978XM_011520920ENSP00000354592577 (aa)XP_011519222Q8TF68
ENST00000535485ZNF384-207912-ENSP00000437488168 (aa)-F5H6N8
ENST00000417772ZNF384-2051286-ENSP00000399572377 (aa)-E9PHB3
ENST00000396801ZNF384-2043008XM_011520917ENSP00000380019577 (aa)XP_011519219Q8TF68
ENST00000319770ZNF384-2013266XM_017018946ENSP00000321650516 (aa)XP_016874435Q8TF68
ENST00000540915ZNF384-2111140-ENSP00000439736204 (aa)-F5H105
ENST00000545946ZNF384-216500-ENSP00000473311159 (aa)-R4GMR4
ENST00000542519ZNF384-213797--- (aa)--
ENST00000542605ZNF384-214571--- (aa)--
ENST00000436774ZNF384-2061096-ENSP00000412911277 (aa)-F5H8L7
ENST00000537248ZNF384-208594--- (aa)--
ENST00000544482ZNF384-215557-ENSP00000438047116 (aa)-F5H0D6
ENST00000542351ZNF384-212572-ENSP00000438555118 (aa)-F5H3Z9
Gene Model
Click here to download ENSG00000126746's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000126746's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000126746ZNF38410063.768ENSAPOG00000022749-8078.736Acanthochromis_polyacanthus
ENSG00000126746ZNF3849163.768ENSAPOG00000001844-8078.736Acanthochromis_polyacanthus
ENSG00000126746ZNF38410063.768ENSAPOG00000005130znf384l8078.736Acanthochromis_polyacanthus
ENSG00000126746ZNF38410096.575ENSAMEG00000014121ZNF38410096.575Ailuropoda_melanoleuca
ENSG00000126746ZNF3849971.341ENSACIG00000023513znf384l8078.161Amphilophus_citrinellus
ENSG00000126746ZNF38410051.852ENSACIG00000013508ZNF3848073.714Amphilophus_citrinellus
ENSG00000126746ZNF38410063.768ENSAOCG00000008769znf384l8078.736Amphiprion_ocellaris
ENSG00000126746ZNF38410063.768ENSAPEG00000014757znf384l10055.882Amphiprion_percula
ENSG00000126746ZNF38410063.768ENSATEG00000000165znf384l8079.310Anabas_testudineus
ENSG00000126746ZNF3849952.365ENSATEG00000020665-7972.414Anabas_testudineus
ENSG00000126746ZNF384100100.000ENSANAG00000032088ZNF38410097.054Aotus_nancymaae
ENSG00000126746ZNF3849950.551ENSACLG00000006757-8078.161Astatotilapia_calliptera
ENSG00000126746ZNF3849663.768ENSACLG00000020430znf384l8078.161Astatotilapia_calliptera
ENSG00000126746ZNF3849163.768ENSACLG00000025353ZNF3847973.714Astatotilapia_calliptera
ENSG00000126746ZNF3849956.140ENSAMXG00000032718si:ch211-154o6.27652.520Astyanax_mexicanus
ENSG00000126746ZNF38410063.768ENSAMXG00000035967znf384l10055.272Astyanax_mexicanus
ENSG00000126746ZNF384100100.000ENSBTAG00000017072ZNF38410096.724Bos_taurus
ENSG00000126746ZNF384100100.000ENSCJAG00000007944ZNF38410098.267Callithrix_jacchus
ENSG00000126746ZNF384100100.000ENSCAFG00000014740ZNF38410097.920Canis_familiaris
ENSG00000126746ZNF384100100.000ENSCAFG00020002932ZNF38410097.920Canis_lupus_dingo
ENSG00000126746ZNF384100100.000ENSCHIG00000012248ZNF38410096.226Capra_hircus
ENSG00000126746ZNF38410099.213ENSTSYG00000003178ZNF38410098.190Carlito_syrichta
ENSG00000126746ZNF3845498.649ENSCAPG00000012608-10098.649Cavia_aperea
ENSG00000126746ZNF38410099.213ENSCPOG00000012313ZNF38410096.730Cavia_porcellus
ENSG00000126746ZNF384100100.000ENSCCAG00000032088ZNF38410098.446Cebus_capucinus
ENSG00000126746ZNF384100100.000ENSCATG00000008991ZNF38410098.616Cercocebus_atys
ENSG00000126746ZNF38410099.213ENSCLAG00000015550ZNF38410096.735Chinchilla_lanigera
ENSG00000126746ZNF384100100.000ENSCSAG00000010379ZNF38410098.446Chlorocebus_sabaeus
ENSG00000126746ZNF3849898.020ENSCHOG00000006697ZNF3848898.020Choloepus_hoffmanni
ENSG00000126746ZNF38410086.047ENSCPBG00000027704ZNF3848384.500Chrysemys_picta_bellii
ENSG00000126746ZNF38410098.425ENSCGRG00001013065Zfp38410096.392Cricetulus_griseus_chok1gshd
ENSG00000126746ZNF38410098.425ENSCGRG00000015919Zfp38410096.392Cricetulus_griseus_crigri
ENSG00000126746ZNF38410063.768ENSCSEG00000019134znf384l10055.096Cynoglossus_semilaevis
ENSG00000126746ZNF38410063.768ENSCVAG00000000607znf384l7579.885Cyprinodon_variegatus
ENSG00000126746ZNF38410060.870ENSCVAG00000022685-8074.138Cyprinodon_variegatus
ENSG00000126746ZNF38410066.667ENSDARG00000001015znf384l9963.636Danio_rerio
ENSG00000126746ZNF38410098.810ENSDNOG00000003936ZNF38410094.622Dasypus_novemcinctus
ENSG00000126746ZNF38410084.615ENSELUG00000006251ZNF3848177.586Esox_lucius
ENSG00000126746ZNF3849983.537ENSELUG00000020479znf384l7766.176Esox_lucius
ENSG00000126746ZNF384100100.000ENSFCAG00000006882ZNF38410098.440Felis_catus
ENSG00000126746ZNF38410099.213ENSFDAG00000007530ZNF38410096.534Fukomys_damarensis
ENSG00000126746ZNF38410062.319ENSFHEG00000011373ZNF3848074.138Fundulus_heteroclitus
ENSG00000126746ZNF3849979.310ENSGMOG00000015258ZNF3847479.310Gadus_morhua
ENSG00000126746ZNF38410063.768ENSGACG00000001879znf384l8078.409Gasterosteus_aculeatus
ENSG00000126746ZNF384100100.000ENSGGOG00000016048ZNF38410099.807Gorilla_gorilla
ENSG00000126746ZNF38410063.768ENSHBUG00000016733ZNF3848073.714Haplochromis_burtoni
ENSG00000126746ZNF3849950.392ENSHBUG00000009319znf384l8178.161Haplochromis_burtoni
ENSG00000126746ZNF3849950.889ENSHCOG00000012508-8156.674Hippocampus_comes
ENSG00000126746ZNF3849948.000ENSHCOG00000001659znf384l8354.527Hippocampus_comes
ENSG00000126746ZNF3849954.965ENSIPUG00000004803si:ch211-154o6.27750.794Ictalurus_punctatus
ENSG00000126746ZNF384100100.000ENSSTOG00000009902ZNF38410098.267Ictidomys_tridecemlineatus
ENSG00000126746ZNF38410065.217ENSKMAG00000021584znf384l8079.310Kryptolebias_marmoratus
ENSG00000126746ZNF3849953.202ENSLBEG00000011133ZNF3847372.989Labrus_bergylta
ENSG00000126746ZNF3849981.818ENSLBEG00000014070znf384l7962.121Labrus_bergylta
ENSG00000126746ZNF38410072.954ENSLACG00000010143ZNF3849575.871Latimeria_chalumnae
ENSG00000126746ZNF38410068.116ENSLOCG00000007968znf384l8382.759Lepisosteus_oculatus
ENSG00000126746ZNF384100100.000ENSLAFG00000008381ZNF38410092.979Loxodonta_africana
ENSG00000126746ZNF384100100.000ENSMFAG00000037538ZNF38410098.450Macaca_fascicularis
ENSG00000126746ZNF384100100.000ENSMMUG00000016990ZNF38499100.000Macaca_mulatta
ENSG00000126746ZNF384100100.000ENSMNEG00000029452ZNF38410098.276Macaca_nemestrina
ENSG00000126746ZNF384100100.000ENSMLEG00000027305ZNF38410098.616Mandrillus_leucophaeus
ENSG00000126746ZNF38410063.768ENSMAMG00000014051znf384l10055.484Mastacembelus_armatus
ENSG00000126746ZNF3849953.695ENSMAMG00000003540ZNF3848072.571Mastacembelus_armatus
ENSG00000126746ZNF3849950.551ENSMZEG00005025974znf384l8078.161Maylandia_zebra
ENSG00000126746ZNF38410063.768ENSMZEG00005018208-8073.714Maylandia_zebra
ENSG00000126746ZNF38410098.425ENSMOCG00000022768Zfp38410095.848Microtus_ochrogaster
ENSG00000126746ZNF3849948.670ENSMMOG00000013506znf384l8354.851Mola_mola
ENSG00000126746ZNF3849979.310ENSMMOG00000015837-8072.159Mola_mola
ENSG00000126746ZNF38410089.003ENSMODG00000018105ZNF38410085.034Monodelphis_domestica
ENSG00000126746ZNF38410053.177ENSMALG00000022522-8158.727Monopterus_albus
ENSG00000126746ZNF38410063.768ENSMALG00000009233znf384l10054.341Monopterus_albus
ENSG00000126746ZNF38410098.425ENSMUSG00000038346Zfp38410096.062Mus_musculus
ENSG00000126746ZNF38410098.425MGP_PahariEiJ_G0022625Zfp38410096.200Mus_pahari
ENSG00000126746ZNF38410099.510ENSMPUG00000016838ZNF38410097.920Mustela_putorius_furo
ENSG00000126746ZNF38410099.405ENSNGAG00000011316Zfp38410096.724Nannospalax_galili
ENSG00000126746ZNF38410063.768ENSNBRG00000020830-8073.143Neolamprologus_brichardi
ENSG00000126746ZNF38410046.082ENSNBRG00000018927znf384l8060.000Neolamprologus_brichardi
ENSG00000126746ZNF384100100.000ENSNLEG00000004506ZNF38410098.440Nomascus_leucogenys
ENSG00000126746ZNF38410098.425ENSOPRG00000003626ZNF38410098.094Ochotona_princeps
ENSG00000126746ZNF38410098.425ENSODEG00000002585ZNF38410096.534Octodon_degus
ENSG00000126746ZNF38410060.274ENSONIG00000013041ZNF3848061.181Oreochromis_niloticus
ENSG00000126746ZNF38410063.768ENSONIG00000004947znf384l8078.161Oreochromis_niloticus
ENSG00000126746ZNF38410099.510ENSOCUG00000003747ZNF38410098.623Oryctolagus_cuniculus
ENSG00000126746ZNF38410066.667ENSORLG00000006888znf384l10055.987Oryzias_latipes
ENSG00000126746ZNF38410062.319ENSORLG00000012835ZNF3848069.274Oryzias_latipes
ENSG00000126746ZNF38410062.319ENSORLG00020003948ZNF3848069.274Oryzias_latipes_hni
ENSG00000126746ZNF38410046.154ENSORLG00020010866znf384l10046.508Oryzias_latipes_hni
ENSG00000126746ZNF38410066.667ENSORLG00015000861znf384l10055.987Oryzias_latipes_hsok
ENSG00000126746ZNF38410062.319ENSORLG00015009575ZNF3848069.274Oryzias_latipes_hsok
ENSG00000126746ZNF38410062.319ENSOMEG00000014386-7869.663Oryzias_melastigma
ENSG00000126746ZNF38410065.217ENSOMEG00000001063znf384l8179.310Oryzias_melastigma
ENSG00000126746ZNF3849697.846ENSOGAG00000010052ZNF38410097.846Otolemur_garnettii
ENSG00000126746ZNF384100100.000ENSPPAG00000043539ZNF38410098.967Pan_paniscus
ENSG00000126746ZNF384100100.000ENSPPRG00000006494ZNF38410098.440Panthera_pardus
ENSG00000126746ZNF384100100.000ENSPTIG00000014865ZNF38410098.097Panthera_tigris_altaica
ENSG00000126746ZNF384100100.000ENSPTRG00000004584ZNF384100100.000Pan_troglodytes
ENSG00000126746ZNF384100100.000ENSPANG00000014845ZNF38410098.446Papio_anubis
ENSG00000126746ZNF38410062.319ENSPKIG00000012153-7978.736Paramormyrops_kingsleyae
ENSG00000126746ZNF38410065.217ENSPKIG00000002222znf384l6778.161Paramormyrops_kingsleyae
ENSG00000126746ZNF38410053.012ENSPMGG00000002902znf384l8078.161Periophthalmus_magnuspinnatus
ENSG00000126746ZNF3849662.319ENSPMGG00000007260-7170.857Periophthalmus_magnuspinnatus
ENSG00000126746ZNF38410098.810ENSPEMG00000016282Zfp38410096.075Peromyscus_maniculatus_bairdii
ENSG00000126746ZNF38410092.143ENSPCIG00000001942ZNF38410085.517Phascolarctos_cinereus
ENSG00000126746ZNF3849974.725ENSPFOG00000015360-9956.066Poecilia_formosa
ENSG00000126746ZNF38410063.768ENSPFOG00000001513znf384l8179.310Poecilia_formosa
ENSG00000126746ZNF38410062.295ENSPLAG00000009475znf384l8078.736Poecilia_latipinna
ENSG00000126746ZNF38410063.768ENSPLAG00000003243-9956.066Poecilia_latipinna
ENSG00000126746ZNF38410063.768ENSPMEG00000019030znf384l8079.310Poecilia_mexicana
ENSG00000126746ZNF38410063.768ENSPMEG00000005010-9956.066Poecilia_mexicana
ENSG00000126746ZNF38410063.768ENSPREG00000007875znf384l9978.481Poecilia_reticulata
ENSG00000126746ZNF384100100.000ENSPPYG00000004196ZNF38410098.618Pongo_abelii
ENSG00000126746ZNF38410098.425ENSPVAG00000011440ZNF38410097.069Pteropus_vampyrus
ENSG00000126746ZNF3849950.392ENSPNYG00000019270znf384l8178.161Pundamilia_nyererei
ENSG00000126746ZNF38410063.768ENSPNYG00000022622ZNF3847973.714Pundamilia_nyererei
ENSG00000126746ZNF38410063.768ENSPNAG00000010552znf384l10055.272Pygocentrus_nattereri
ENSG00000126746ZNF38410098.425ENSRNOG00000017066Zfp38410098.148Rattus_norvegicus
ENSG00000126746ZNF384100100.000ENSRBIG00000034371ZNF38410098.616Rhinopithecus_bieti
ENSG00000126746ZNF384100100.000ENSRROG00000034990ZNF38410098.276Rhinopithecus_roxellana
ENSG00000126746ZNF384100100.000ENSSBOG00000020182ZNF38410098.448Saimiri_boliviensis_boliviensis
ENSG00000126746ZNF38410092.143ENSSHAG00000015330ZNF38410085.812Sarcophilus_harrisii
ENSG00000126746ZNF3849959.649ENSSFOG00015013893si:ch211-154o6.28055.313Scleropages_formosus
ENSG00000126746ZNF38410065.217ENSSFOG00015023839znf384l8079.310Scleropages_formosus
ENSG00000126746ZNF3849977.576ENSSMAG00000017501-8456.583Scophthalmus_maximus
ENSG00000126746ZNF38410065.217ENSSDUG00000010249znf384l7679.885Seriola_dumerili
ENSG00000126746ZNF38410051.839ENSSLDG00000024533-7950.302Seriola_lalandi_dorsalis
ENSG00000126746ZNF3849982.716ENSSLDG00000017138znf384l7979.885Seriola_lalandi_dorsalis
ENSG00000126746ZNF38410060.870ENSSPAG00000017553-7972.000Stegastes_partitus
ENSG00000126746ZNF38410063.768ENSSPAG00000009256znf384l8078.736Stegastes_partitus
ENSG00000126746ZNF38410063.768ENSTRUG00000004550znf384l8078.161Takifugu_rubripes
ENSG00000126746ZNF38410051.034ENSTRUG00000011097-7957.411Takifugu_rubripes
ENSG00000126746ZNF3849952.094ENSTNIG00000008018-8167.778Tetraodon_nigroviridis
ENSG00000126746ZNF38410060.274ENSTNIG00000000726znf384l10054.485Tetraodon_nigroviridis
ENSG00000126746ZNF384100100.000ENSTTRG00000011754ZNF38410097.227Tursiops_truncatus
ENSG00000126746ZNF384100100.000ENSUAMG00000022892ZNF38410097.574Ursus_americanus
ENSG00000126746ZNF384100100.000ENSUMAG00000005073ZNF38410097.574Ursus_maritimus
ENSG00000126746ZNF384100100.000ENSVVUG00000011329ZNF38410097.762Vulpes_vulpes
ENSG00000126746ZNF3849935.897ENSXCOG00000013504znf384l7279.310Xiphophorus_couchianus
ENSG00000126746ZNF38410063.768ENSXMAG00000016787znf384l8079.310Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific-ISAFunction
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific19274049.NASFunction
GO:0003677DNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0006357regulation of transcription by RNA polymerase II-IEAProcess
GO:0046872metal ion binding-IEAFunction

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