EuRBPDB

Description

Ensembl ID: ENSG00000128159 (Gene tree)
Gene ID: 85378
Gene Symbol: TUBGCP6
Alias: GCP6|KIAA1669|DJ402G11.6
Full Name: tubulin gamma complex associated protein 6
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 27,336 bases
Position: chr22:50,217,689-50,245,024
Accession: 18127
RBP type: non-canonical RBP
Summary: The protein encoded by this gene is part of a large multisubunit complex required for microtubule nucleation at the centrosome. [provided by RefSeq, Jul 2008]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000498611	TUBGCP6-208	5274	-	-	- (aa)	-	-
ENST00000248846	TUBGCP6-201	5612	-	ENSP00000248846	1819 (aa)	-	Q96RT7
ENST00000439308	TUBGCP6-204	6078	-	ENSP00000397387	1493 (aa)	-	E7EQL8
ENST00000434349	TUBGCP6-203	830	-	ENSP00000409650	277 (aa)	-	H7C358
ENST00000473946	TUBGCP6-205	1733	-	-	- (aa)	-	-
ENST00000489511	TUBGCP6-206	612	-	-	- (aa)	-	-
ENST00000491449	TUBGCP6-207	4044	-	-	- (aa)	-	-
ENST00000425018	TUBGCP6-202	1509	-	ENSP00000405979	488 (aa)	-	H7C2H5

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000128159	Erythrocyte Count	5.5230000E-005	-
ENSG00000128159	Urine	1E-6	23251661
ENSG00000128159	Maximal Midexpiratory Flow Rate	1E-6	24023788

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000128159	rs5771109	22	50240142	T	Major depressive disorder	27479909	[0.015-0.039] unit decrease	0.0269	EFO_0003761
ENSG00000128159	rs5771242	22	50223440	?	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	24023788			EFO_0004313
ENSG00000128159	rs7511006	22	50237830	G	Obesity-related traits	23251661	[NR] g/d increase	0.04	EFO_0005190
ENSG00000128159	rs17836662	22	50233725	?	Heel bone mineral density	30595370			EFO_0009270

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	21873635.	IBA	Process
GO:0000922	spindle pole	-	IEA	Component
GO:0000923	equatorial microtubule organizing center	21873635.	IBA	Component
GO:0000930	gamma-tubulin complex	21873635.	IBA	Component
GO:0005813	centrosome	21873635.	IBA	Component
GO:0005813	centrosome	21399614.	IDA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0005874	microtubule	-	IEA	Component
GO:0007020	microtubule nucleation	11694571.	IDA	Process
GO:0008017	microtubule binding	11694571.	IDA	Function
GO:0008274	gamma-tubulin ring complex	21873635.	IBA	Component
GO:0008274	gamma-tubulin ring complex	11694571.	IDA	Component
GO:0008275	gamma-tubulin small complex	21873635.	IBA	Component
GO:0016020	membrane	19946888.	HDA	Component
GO:0031122	cytoplasmic microtubule organization	21873635.	IBA	Process
GO:0043015	gamma-tubulin binding	21873635.	IBA	Function
GO:0051011	microtubule minus-end binding	21873635.	IBA	Function
GO:0051225	spindle assembly	21873635.	IBA	Process
GO:0051321	meiotic cell cycle	21873635.	IBA	Process
GO:0051415	microtubule nucleation by interphase microtubule organizing center	21873635.	IBA	Process