EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000128534 (Gene tree)
Gene ID
51691
Gene Symbol
LSM8
Alias
YJR022W
Full Name
LSM8 homolog, U6 small nuclear RNA associated
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
20,008 bases
Position
chr7:118,184,032-118,204,039
Accession
20471
RBP type
canonical RBP
Summary
This gene encodes a member of the like-Sm family of proteins. The encoded protein consists of a closed barrel shape, made up of five anti-parallel beta strands and an alpha helix. This protein partners with six paralogs to form a heteroheptameric ring which transiently binds U6 small nuclear RNAs and is involved in the general maturation of RNA in the nucleus. [provided by RefSeq, Jan 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000249299LSMPF01423.229.3e-1911
ENSP00000395263LSMPF01423.229.9e-1811
ENSP00000408267LSMPF01423.229.6e-1411
ENSP00000403811LSMPF01423.224.9e-1211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
29615482Defining essential elements and genetic interactions of the yeast Lsm2-8 ring and demonstration that essentiality of Lsm2-8 is bypassed via overexpression of U6 snRNA or the U6 snRNP subunit Prp24.RNA2018 JunRoth AJdoi: 10.1261/rna.066175.118
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000422760LSM8-2031920-ENSP0000040381175 (aa)-C9JIZ0
ENST00000424702LSM8-2044030-ENSP0000039526367 (aa)-F2Z2Y6
ENST00000411938LSM8-202290-ENSP0000040826777 (aa)-C9JNV3
ENST00000249299LSM8-2011305-ENSP0000024929996 (aa)-O95777
Gene Model
Click here to download ENSG00000128534's gene model file
Pathways
Pathway IDPathway NameSource
hsa03018RNA degradationKEGG
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000128534Hemoglobins1.49763859072319E-617903294
ENSG00000128534Hemoglobins2.89847563027428E-617903294
ENSG00000128534Hemoglobins3.08704903993923E-617903294
ENSG00000128534Echocardiography1.76907441445477E-717903301
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000128534's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000128534LSM89933.333ENSG00000175324LSM16534.091
ENSG00000128534LSM87335.526ENSG00000130332LSM77235.526
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000128534LSM810097.333ENSAPOG00000008649lsm810092.708Acanthochromis_polyacanthus
ENSG00000128534LSM8100100.000ENSAMEG00000001162LSM8100100.000Ailuropoda_melanoleuca
ENSG00000128534LSM810097.333ENSACIG00000014694lsm810097.333Amphilophus_citrinellus
ENSG00000128534LSM810097.333ENSAOCG00000013926lsm810092.708Amphiprion_ocellaris
ENSG00000128534LSM810097.333ENSAPEG00000023502lsm810092.708Amphiprion_percula
ENSG00000128534LSM810097.333ENSATEG00000023432lsm810097.333Anabas_testudineus
ENSG00000128534LSM810098.667ENSAPLG00000005115LSM89591.489Anas_platyrhynchos
ENSG00000128534LSM8100100.000ENSANAG00000027771LSM8100100.000Aotus_nancymaae
ENSG00000128534LSM810097.333ENSACLG00000011253lsm810092.708Astatotilapia_calliptera
ENSG00000128534LSM810098.667ENSAMXG00000042902lsm810094.792Astyanax_mexicanus
ENSG00000128534LSM8100100.000ENSBTAG00000012649LSM8100100.000Bos_taurus
ENSG00000128534LSM810059.701WBGene00003082lsm-89658.511Caenorhabditis_elegans
ENSG00000128534LSM8100100.000ENSCJAG00000046406LSM8100100.000Callithrix_jacchus
ENSG00000128534LSM8100100.000ENSCAFG00000016459LSM896100.000Canis_familiaris
ENSG00000128534LSM8100100.000ENSCAFG00020007643-100100.000Canis_lupus_dingo
ENSG00000128534LSM8100100.000ENSCAFG00020012800-6698.824Canis_lupus_dingo
ENSG00000128534LSM8100100.000ENSCHIG00000014201LSM890100.000Capra_hircus
ENSG00000128534LSM8100100.000ENSTSYG00000032434LSM8100100.000Carlito_syrichta
ENSG00000128534LSM89998.649ENSCAPG00000008253LSM810098.649Cavia_aperea
ENSG00000128534LSM8100100.000ENSCPOG00000035673LSM8100100.000Cavia_porcellus
ENSG00000128534LSM8100100.000ENSCCAG00000021329LSM8100100.000Cebus_capucinus
ENSG00000128534LSM8100100.000ENSCATG00000045302LSM8100100.000Cercocebus_atys
ENSG00000128534LSM8100100.000ENSCLAG00000003726LSM8100100.000Chinchilla_lanigera
ENSG00000128534LSM810097.333ENSCSAG00000019007-10095.833Chlorocebus_sabaeus
ENSG00000128534LSM8100100.000ENSCSAG00000010802-100100.000Chlorocebus_sabaeus
ENSG00000128534LSM8100100.000ENSCPBG00000008154LSM887100.000Chrysemys_picta_bellii
ENSG00000128534LSM810080.597ENSCING00000024877-10075.000Ciona_intestinalis
ENSG00000128534LSM8100100.000ENSCANG00000040728LSM8100100.000Colobus_angolensis_palliatus
ENSG00000128534LSM8100100.000ENSCGRG00001000450Lsm8100100.000Cricetulus_griseus_chok1gshd
ENSG00000128534LSM8100100.000ENSCGRG00000005587Lsm8100100.000Cricetulus_griseus_crigri
ENSG00000128534LSM89695.833ENSCSEG00000004164lsm810081.250Cynoglossus_semilaevis
ENSG00000128534LSM810096.000ENSCVAG00000020547lsm810091.667Cyprinodon_variegatus
ENSG00000128534LSM810097.333ENSDARG00000091656lsm810091.667Danio_rerio
ENSG00000128534LSM8100100.000ENSDNOG00000034613LSM8100100.000Dasypus_novemcinctus
ENSG00000128534LSM8100100.000ENSDORG00000027868Lsm8100100.000Dipodomys_ordii
ENSG00000128534LSM89771.233FBgn0035271CG20219969.149Drosophila_melanogaster
ENSG00000128534LSM8100100.000ENSETEG00000011594LSM810098.958Echinops_telfairi
ENSG00000128534LSM89991.892ENSEBUG00000012017lsm810091.892Eptatretus_burgeri
ENSG00000128534LSM8100100.000ENSEASG00005008932LSM862100.000Equus_asinus_asinus
ENSG00000128534LSM8100100.000ENSECAG00000024025LSM877100.000Equus_caballus
ENSG00000128534LSM810094.667ENSELUG00000010138lsm810091.667Esox_lucius
ENSG00000128534LSM8100100.000ENSFCAG00000036620-100100.000Felis_catus
ENSG00000128534LSM88973.134ENSFCAG00000044794-8374.390Felis_catus
ENSG00000128534LSM8100100.000ENSFALG00000010023LSM810098.958Ficedula_albicollis
ENSG00000128534LSM8100100.000ENSFDAG00000019530LSM8100100.000Fukomys_damarensis
ENSG00000128534LSM810097.333ENSFHEG00000013729lsm810092.708Fundulus_heteroclitus
ENSG00000128534LSM8100100.000ENSGALG00000009110LSM810098.958Gallus_gallus
ENSG00000128534LSM810096.000ENSGAFG00000001135lsm810091.667Gambusia_affinis
ENSG00000128534LSM8100100.000ENSGAGG00000017366LSM8100100.000Gopherus_agassizii
ENSG00000128534LSM8100100.000ENSGGOG00000041883LSM8100100.000Gorilla_gorilla
ENSG00000128534LSM810097.333ENSHBUG00000003646lsm810092.708Haplochromis_burtoni
ENSG00000128534LSM8100100.000ENSHGLG00000001988-99100.000Heterocephalus_glaber_female
ENSG00000128534LSM810094.030ENSHGLG00000019782-10093.750Heterocephalus_glaber_female
ENSG00000128534LSM810095.833ENSHGLG00100012166-10095.833Heterocephalus_glaber_male
ENSG00000128534LSM8100100.000ENSHGLG00100003934-9596.842Heterocephalus_glaber_male
ENSG00000128534LSM810096.000ENSHCOG00000005037lsm810091.667Hippocampus_comes
ENSG00000128534LSM810098.667ENSIPUG00000019811NAA3810094.792Ictalurus_punctatus
ENSG00000128534LSM810086.667ENSSTOG00000034801-8187.500Ictidomys_tridecemlineatus
ENSG00000128534LSM8100100.000ENSSTOG00000009039LSM8100100.000Ictidomys_tridecemlineatus
ENSG00000128534LSM8100100.000ENSJJAG00000009031Lsm899100.000Jaculus_jaculus
ENSG00000128534LSM810097.333ENSKMAG00000018983lsm810092.708Kryptolebias_marmoratus
ENSG00000128534LSM810096.000ENSLACG00000010231LSM810094.792Latimeria_chalumnae
ENSG00000128534LSM810097.333ENSLOCG00000015580lsm810093.750Lepisosteus_oculatus
ENSG00000128534LSM8100100.000ENSLAFG00000011242LSM810098.969Loxodonta_africana
ENSG00000128534LSM810096.000ENSMFAG00000013044-10095.833Macaca_fascicularis
ENSG00000128534LSM8100100.000ENSMFAG00000035798LSM8100100.000Macaca_fascicularis
ENSG00000128534LSM8100100.000ENSMMUG00000046401LSM810097.297Macaca_mulatta
ENSG00000128534LSM810096.000ENSMNEG00000011141-10096.000Macaca_nemestrina
ENSG00000128534LSM8100100.000ENSMNEG00000036764-100100.000Macaca_nemestrina
ENSG00000128534LSM810084.375ENSMLEG00000039324-10084.375Mandrillus_leucophaeus
ENSG00000128534LSM8100100.000ENSMLEG00000035828-100100.000Mandrillus_leucophaeus
ENSG00000128534LSM810097.333ENSMAMG00000018839lsm810097.333Mastacembelus_armatus
ENSG00000128534LSM810097.333ENSMZEG00005019138lsm810092.708Maylandia_zebra
ENSG00000128534LSM8100100.000ENSMGAG00000008808LSM810098.958Meleagris_gallopavo
ENSG00000128534LSM810080.208ENSMAUG00000015356-10080.208Mesocricetus_auratus
ENSG00000128534LSM89990.541ENSMAUG00000020287-10090.541Mesocricetus_auratus
ENSG00000128534LSM8100100.000ENSMAUG00000015721-10092.708Mesocricetus_auratus
ENSG00000128534LSM8100100.000ENSMICG00000042730LSM8100100.000Microcebus_murinus
ENSG00000128534LSM8100100.000ENSMOCG00000001688Lsm8100100.000Microtus_ochrogaster
ENSG00000128534LSM810097.333ENSMMOG00000006046lsm810097.333Mola_mola
ENSG00000128534LSM89786.667ENSMODG00000015729LSM89686.667Monodelphis_domestica
ENSG00000128534LSM810097.333ENSMALG00000000405lsm810093.750Monopterus_albus
ENSG00000128534LSM8100100.000MGP_CAROLIEiJ_G0028125-100100.000Mus_caroli
ENSG00000128534LSM8100100.000ENSMUSG00000044155Lsm8100100.000Mus_musculus
ENSG00000128534LSM8100100.000MGP_PahariEiJ_G0021881Lsm8100100.000Mus_pahari
ENSG00000128534LSM8100100.000MGP_SPRETEiJ_G0029125-100100.000Mus_spretus
ENSG00000128534LSM810098.958ENSMLUG00000027762-10098.958Myotis_lucifugus
ENSG00000128534LSM8100100.000ENSMLUG00000006837-100100.000Myotis_lucifugus
ENSG00000128534LSM8100100.000ENSNGAG00000016554Lsm8100100.000Nannospalax_galili
ENSG00000128534LSM810097.333ENSNBRG00000014441lsm810092.708Neolamprologus_brichardi
ENSG00000128534LSM8100100.000ENSNLEG00000011768LSM8100100.000Nomascus_leucogenys
ENSG00000128534LSM810088.542ENSMEUG00000007801LSM810088.542Notamacropus_eugenii
ENSG00000128534LSM8100100.000ENSOPRG00000014809LSM8100100.000Ochotona_princeps
ENSG00000128534LSM89983.333ENSODEG00000020290-10082.558Octodon_degus
ENSG00000128534LSM8100100.000ENSODEG00000000418-100100.000Octodon_degus
ENSG00000128534LSM8100100.000ENSOANG00000014536LSM810098.958Ornithorhynchus_anatinus
ENSG00000128534LSM8100100.000ENSOCUG00000017359LSM810098.969Oryctolagus_cuniculus
ENSG00000128534LSM89697.222ENSORLG00000017432lsm810082.292Oryzias_latipes
ENSG00000128534LSM89697.222ENSORLG00020004376lsm810082.292Oryzias_latipes_hni
ENSG00000128534LSM810097.333ENSORLG00015003757lsm810092.708Oryzias_latipes_hsok
ENSG00000128534LSM89297.101ENSOMEG00000022509lsm810081.250Oryzias_melastigma
ENSG00000128534LSM8100100.000ENSOGAG00000013377LSM8100100.000Otolemur_garnettii
ENSG00000128534LSM8100100.000ENSOARG00000017974LSM8100100.000Ovis_aries
ENSG00000128534LSM8100100.000ENSPPAG00000043228-100100.000Pan_paniscus
ENSG00000128534LSM8100100.000ENSPPRG00000006444LSM8100100.000Panthera_pardus
ENSG00000128534LSM8100100.000ENSPTIG00000004722LSM8100100.000Panthera_tigris_altaica
ENSG00000128534LSM8100100.000ENSPTRG00000046596-100100.000Pan_troglodytes
ENSG00000128534LSM8100100.000ENSPANG00000035470-100100.000Papio_anubis
ENSG00000128534LSM810095.522ENSPANG00000019395-10093.750Papio_anubis
ENSG00000128534LSM810097.333ENSPKIG00000006092lsm88697.647Paramormyrops_kingsleyae
ENSG00000128534LSM8100100.000ENSPSIG00000017054LSM8100100.000Pelodiscus_sinensis
ENSG00000128534LSM810097.333ENSPMGG00000016442lsm810097.333Periophthalmus_magnuspinnatus
ENSG00000128534LSM89997.297ENSPEMG00000009153Lsm810097.297Peromyscus_maniculatus_bairdii
ENSG00000128534LSM8100100.000ENSPCIG00000021467LSM898100.000Phascolarctos_cinereus
ENSG00000128534LSM810096.000ENSPFOG00000012340lsm810091.667Poecilia_formosa
ENSG00000128534LSM810096.000ENSPLAG00000000516lsm88994.118Poecilia_latipinna
ENSG00000128534LSM810096.000ENSPMEG00000022567lsm810091.667Poecilia_mexicana
ENSG00000128534LSM89785.000ENSPREG00000005527lsm87285.000Poecilia_reticulata
ENSG00000128534LSM8100100.000ENSPPYG00000017942LSM8100100.000Pongo_abelii
ENSG00000128534LSM89487.302ENSPCOG00000017982-9977.895Propithecus_coquereli
ENSG00000128534LSM8100100.000ENSPCOG00000003309-100100.000Propithecus_coquereli
ENSG00000128534LSM810098.667ENSPVAG00000000990LSM810098.824Pteropus_vampyrus
ENSG00000128534LSM810097.333ENSPNYG00000011448lsm810092.708Pundamilia_nyererei
ENSG00000128534LSM810098.667ENSPNAG00000010252lsm810094.792Pygocentrus_nattereri
ENSG00000128534LSM8100100.000ENSRNOG00000058677Lsm8100100.000Rattus_norvegicus
ENSG00000128534LSM8100100.000ENSRBIG00000032851LSM8100100.000Rhinopithecus_bieti
ENSG00000128534LSM8100100.000ENSRROG00000039618LSM8100100.000Rhinopithecus_roxellana
ENSG00000128534LSM8100100.000ENSSBOG00000023223LSM8100100.000Saimiri_boliviensis_boliviensis
ENSG00000128534LSM8100100.000ENSSHAG00000018435-100100.000Sarcophilus_harrisii
ENSG00000128534LSM810096.000ENSSFOG00015004412lsm810091.667Scleropages_formosus
ENSG00000128534LSM810097.333ENSSMAG00000009458lsm810097.333Scophthalmus_maximus
ENSG00000128534LSM810097.333ENSSDUG00000014702lsm810092.708Seriola_dumerili
ENSG00000128534LSM810097.333ENSSLDG00000016870lsm810097.333Seriola_lalandi_dorsalis
ENSG00000128534LSM896100.000ENSSARG00000009628-100100.000Sorex_araneus
ENSG00000128534LSM8100100.000ENSSPUG00000017419LSM8100100.000Sphenodon_punctatus
ENSG00000128534LSM810097.333ENSSPAG00000021422lsm810092.708Stegastes_partitus
ENSG00000128534LSM8100100.000ENSSSCG00000021652LSM8100100.000Sus_scrofa
ENSG00000128534LSM810097.333ENSTGUG00000016823-10096.875Taeniopygia_guttata
ENSG00000128534LSM810098.667ENSTGUG00000004730-10097.917Taeniopygia_guttata
ENSG00000128534LSM810097.333ENSTRUG00000025192lsm810092.708Takifugu_rubripes
ENSG00000128534LSM810097.333ENSTNIG00000002864lsm810092.708Tetraodon_nigroviridis
ENSG00000128534LSM8100100.000ENSTTRG00000001023LSM8100100.000Tursiops_truncatus
ENSG00000128534LSM8100100.000ENSUAMG00000006943-9296.591Ursus_americanus
ENSG00000128534LSM8100100.000ENSUMAG00000003073LSM89496.591Ursus_maritimus
ENSG00000128534LSM8100100.000ENSVPAG00000001530LSM8100100.000Vicugna_pacos
ENSG00000128534LSM810097.333ENSVVUG00000013248-8297.333Vulpes_vulpes
ENSG00000128534LSM810097.333ENSXETG00000021829lsm89296.629Xenopus_tropicalis
ENSG00000128534LSM810094.667ENSXCOG00000012938lsm810089.583Xiphophorus_couchianus
ENSG00000128534LSM810096.000ENSXMAG00000025919lsm810091.667Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome28781166.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005515protein binding14667819.15231747.19628699.21988832.22365833.IPIFunction
GO:0005634nucleus26912367.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005688U6 snRNP21873635.IBAComponent
GO:0016070RNA metabolic process21873635.IBAProcess
GO:0017070U6 snRNA binding10523320.NASFunction
GO:0046540U4/U6 x U5 tri-snRNP complex21873635.IBAComponent
GO:0046540U4/U6 x U5 tri-snRNP complex26912367.IDAComponent
GO:0071005U2-type precatalytic spliceosome28781166.IDAComponent
GO:0120115Lsm2-8 complex10523320.IDAComponent

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