EuRBPDB

Description

RBPome

Literatures

Expression

Transcripts

Gene Model

Phenotypes

GWAS

PPI

Gene Ontology

Description

Ensembl ID: ENSG00000130479 (Gene tree)
Gene ID: 55201
Gene Symbol: MAP1S
Alias: FLJ10669|MAP8|C19orf5|VCY2IP1|BPY2IP1
Full Name: microtubule associated protein 1S
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 15,275 bases
Position: chr19:17,719,242-17,734,516
Accession: 15715
RBP type: non-canonical RBP
Summary: (Microtubule Associated Protein 1S) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include identical protein binding and actin filament binding. An important paralog of this gene is MAP1B.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
18710533	Interaction of the growth and tumour suppressor NORE1A with microtubules is not required for its growth-suppressive function.	BMC Res Notes	2008 May 15	Moshnikova A	doi: 10.1186/1756-0500-1-13.

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000598756	MAP1S-214	583	-	-	- (aa)	-	-
ENST00000593593	MAP1S-203	566	-	ENSP00000468878	81 (aa)	-	M0QX37
ENST00000544059	MAP1S-202	3399	XM_017026931	ENSP00000439243	1033 (aa)	XP_016882420	Q66K74
ENST00000596637	MAP1S-209	573	-	ENSP00000469854	67 (aa)	-	M0QYI5
ENST00000599494	MAP1S-217	585	-	-	- (aa)	-	-
ENST00000600608	MAP1S-219	539	-	ENSP00000470306	93 (aa)	-	M0QZ50
ENST00000595338	MAP1S-208	558	-	-	- (aa)	-	-
ENST00000597000	MAP1S-210	448	-	ENSP00000471994	120 (aa)	-	M0R1M7
ENST00000601544	MAP1S-221	598	-	-	- (aa)	-	-
ENST00000597067	MAP1S-211	539	-	-	- (aa)	-	-
ENST00000597735	MAP1S-213	580	-	ENSP00000469321	185 (aa)	-	M0QXQ9
ENST00000594212	MAP1S-204	1132	-	ENSP00000469123	82 (aa)	-	M0QXE8
ENST00000597681	MAP1S-212	947	-	-	- (aa)	-	-
ENST00000594625	MAP1S-207	585	-	ENSP00000469571	189 (aa)	-	M0QY41
ENST00000601097	MAP1S-220	650	-	-	- (aa)	-	-
ENST00000594340	MAP1S-205	567	-	-	- (aa)	-	-
ENST00000594365	MAP1S-206	891	-	ENSP00000469232	79 (aa)	-	M0QXK6
ENST00000324096	MAP1S-201	3419	XM_017026930	ENSP00000325313	1059 (aa)	XP_016882419	Q66K74
ENST00000598769	MAP1S-215	717	-	-	- (aa)	-	-
ENST00000598916	MAP1S-216	542	-	-	- (aa)	-	-
ENST00000600186	MAP1S-218	587	-	ENSP00000471903	188 (aa)	-	M0R1J2

Gene Model

Click here to download ENSG00000130479's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000130479	Platelet Function Tests	5.7400000E-007	-
ENSG00000130479	Platelet Function Tests	1.9100000E-006	-
ENSG00000130479	Platelet Function Tests	4.2700000E-006	-
ENSG00000130479	Platelet Function Tests	1.5400000E-007	-
ENSG00000130479	Platelet Function Tests	2.4100000E-006	-
ENSG00000130479	Platelet Function Tests	4.1900000E-006	-
ENSG00000130479	Platelet Function Tests	5.4100000E-006	-

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000130479	rs7251815	19	17734133	T	Coronary artery disease	29212778	[0.038-0.065] unit increase	0.0511	EFO_0000378

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000130479's network

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0001578	microtubule bundle formation	15528209.	IMP	Process
GO:0003677	DNA binding	15907802.	IDA	Function
GO:0003779	actin binding	21873635.	IBA	Function
GO:0004536	deoxyribonuclease activity	15907802.	IDA	Function
GO:0005515	protein binding	12762840.14627543.15907802.17658481.19027008.	IPI	Function
GO:0005634	nucleus	12762840.	IDA	Component
GO:0005730	nucleolus	-	IDA	Component
GO:0005819	spindle	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	12762840.	IDA	Component
GO:0005874	microtubule	21873635.	IBA	Component
GO:0005874	microtubule	15528209.17658481.	IDA	Component
GO:0005875	microtubule associated complex	21873635.	IBA	Component
GO:0006259	DNA metabolic process	-	IEA	Process
GO:0006914	autophagy	21262964.	TAS	Process
GO:0006915	apoptotic process	-	IEA	Process
GO:0007399	nervous system development	16297881.	ISS	Process
GO:0007409	axonogenesis	21873635.	IBA	Process
GO:0007420	brain development	15528209.	ISS	Process
GO:0008017	microtubule binding	21873635.	IBA	Function
GO:0008017	microtubule binding	15528209.	IDA	Function
GO:0008017	microtubule binding	12762840.	TAS	Function
GO:0010848	regulation of chromatin disassembly	12762840.	IDA	Process
GO:0015631	tubulin binding	21873635.	IBA	Function
GO:0015631	tubulin binding	15528209.	IDA	Function
GO:0016358	dendrite development	21873635.	IBA	Process
GO:0030054	cell junction	-	IDA	Component
GO:0030425	dendrite	21873635.	IBA	Component
GO:0030425	dendrite	15528209.	ISS	Component
GO:0031114	regulation of microtubule depolymerization	21873635.	IBA	Process
GO:0042802	identical protein binding	-	IEA	Function
GO:0042995	cell projection	21873635.	IBA	Component
GO:0042995	cell projection	17658481.	IDA	Component
GO:0043025	neuronal cell body	21873635.	IBA	Component
GO:0043025	neuronal cell body	15528209.	ISS	Component
GO:0045202	synapse	21873635.	IBA	Component
GO:0045202	synapse	17658481.	IDA	Component
GO:0047497	mitochondrion transport along microtubule	12762840.	TAS	Process
GO:0048471	perinuclear region of cytoplasm	12762840.	IDA	Component
GO:0048487	beta-tubulin binding	12762840.	IDA	Function
GO:0048812	neuron projection morphogenesis	15528209.	IEP	Process
GO:0051015	actin filament binding	15528209.	IDA	Function
GO:0051015	actin filament binding	12762840.	IDA	Function