EuRBPDB

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  • Basic Information
  • Cancer Related Information

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000130810 (Gene tree)
Gene ID
56342
Gene Symbol
PPAN
Alias
SSF1|SSF2|SSF|BXDC3
Full Name
peter pan homolog
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
5,412 bases
Position
chr19:10,106,223-10,111,634
Accession
9227
RBP type
canonical RBP
Summary
The protein encoded by this gene is an evolutionarily conserved protein similar to yeast SSF1 as well as to the gene product of the Drosophila gene peter pan (ppan). SSF1 is known to be involved in the second step of mRNA splicing. Both SSF1 and ppan are essential for cell growth and proliferation. Exogenous expression of this gene was reported to reduce the anchorage-independent growth of some tumor cells. Read-through transcription of this gene with P2RY11/P2Y(11), an adjacent downstream gene that encodes an ATP receptor, has been found. These read-through transcripts are ubiquitously present and up-regulated during granulocyte differentiation. [provided by RefSeq, Nov 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000253107BrixPF04427.181.8e-4411
ENSP00000377382BrixPF04427.183e-4011
ENSP00000410485BrixPF04427.187.3e-3011
ENSP00000415988BrixPF04427.181.4e-1411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000486482PPAN-2081017--- (aa)--
ENST00000444703PPAN-204757-ENSP00000415467208 (aa)-H7C446
ENST00000468881PPAN-207627--- (aa)--
ENST00000393793PPAN-2021575-ENSP00000377382420 (aa)-A8MV53
ENST00000430370PPAN-203594-ENSP0000041598897 (aa)-C9JHF7
ENST00000253107PPAN-2011657-ENSP00000253107473 (aa)-Q9NQ55
ENST00000466025PPAN-206523--- (aa)--
ENST00000446223PPAN-205844-ENSP00000410485210 (aa)-C9J3W3
Gene Model
Click here to download ENSG00000130810's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000130810Narcolepsy4E-1024204295
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000130810rs15515701910107354?Narcolepsy24204295[1.2-1.43]1.32EFO_0000614
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000130810's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000130810PPAN9971.292ENSAPOG00000017687ppan8259.368Acanthochromis_polyacanthus
ENSG00000130810PPAN9994.737ENSAMEG00000011989-9779.780Ailuropoda_melanoleuca
ENSG00000130810PPAN9969.792ENSACIG00000007417ppan8257.666Amphilophus_citrinellus
ENSG00000130810PPAN9972.249ENSAOCG00000005416ppan8259.594Amphiprion_ocellaris
ENSG00000130810PPAN9972.249ENSAPEG00000010382ppan8259.594Amphiprion_percula
ENSG00000130810PPAN9975.598ENSATEG00000021221ppan7962.110Anabas_testudineus
ENSG00000130810PPAN9975.598ENSACAG00000003838-7964.434Anolis_carolinensis
ENSG00000130810PPAN9993.780ENSANAG00000038012-9787.366Aotus_nancymaae
ENSG00000130810PPAN10097.938ENSANAG00000020371-9688.521Aotus_nancymaae
ENSG00000130810PPAN9969.378ENSACLG00000019215ppan8059.670Astatotilapia_calliptera
ENSG00000130810PPAN10072.165ENSAMXG00000032540ppan7759.620Astyanax_mexicanus
ENSG00000130810PPAN9996.172ENSBTAG00000012745PPAN9679.303Bos_taurus
ENSG00000130810PPAN9939.535WBGene00003062lpd-65639.564Caenorhabditis_elegans
ENSG00000130810PPAN10097.938ENSCJAG00000039296PPAN9688.496Callithrix_jacchus
ENSG00000130810PPAN9995.694ENSCAFG00000017917P2RY117980.761Canis_familiaris
ENSG00000130810PPAN9995.694ENSCAFG00020023621-9679.739Canis_lupus_dingo
ENSG00000130810PPAN9995.694ENSCHIG00000006450-9678.775Capra_hircus
ENSG00000130810PPAN10092.784ENSTSYG00000034845-9179.717Carlito_syrichta
ENSG00000130810PPAN9990.909ENSCPOG00000025539-9386.919Cavia_porcellus
ENSG00000130810PPAN10097.938ENSCCAG00000032527-9689.159Cebus_capucinus
ENSG00000130810PPAN9999.522ENSCATG00000040554-9695.796Cercocebus_atys
ENSG00000130810PPAN9993.301ENSCLAG00000009362-9678.821Chinchilla_lanigera
ENSG00000130810PPAN9999.522ENSCSAG00000007423-9695.796Chlorocebus_sabaeus
ENSG00000130810PPAN10080.952ENSCPBG00000005372-7469.576Chrysemys_picta_bellii
ENSG00000130810PPAN9951.131ENSCING00000005420ppan8645.985Ciona_intestinalis
ENSG00000130810PPAN9948.430ENSCSAVG00000005816-8645.169Ciona_savignyi
ENSG00000130810PPAN9999.522ENSCANG00000036259-9594.602Colobus_angolensis_palliatus
ENSG00000130810PPAN9992.344ENSCGRG00001015990Ppan9777.511Cricetulus_griseus_chok1gshd
ENSG00000130810PPAN9992.344ENSCGRG00000012785Ppan9775.949Cricetulus_griseus_crigri
ENSG00000130810PPAN9974.641ENSCSEG00000021023ppan7263.750Cynoglossus_semilaevis
ENSG00000130810PPAN9971.292ENSCVAG00000013547ppan8159.050Cyprinodon_variegatus
ENSG00000130810PPAN9972.249ENSDARG00000022232ppan8260.508Danio_rerio
ENSG00000130810PPAN9996.651ENSDNOG00000047670-6892.667Dasypus_novemcinctus
ENSG00000130810PPAN9996.172ENSDORG00000003829Ppan10089.826Dipodomys_ordii
ENSG00000130810PPAN9939.904FBgn0010770ppan8240.547Drosophila_melanogaster
ENSG00000130810PPAN10089.691ENSETEG00000019286-9674.781Echinops_telfairi
ENSG00000130810PPAN9967.943ENSEBUG00000004335ppan6164.683Eptatretus_burgeri
ENSG00000130810PPAN9995.694ENSEASG00005010574-9681.140Equus_asinus_asinus
ENSG00000130810PPAN9995.694ENSECAG00000024469-9680.702Equus_caballus
ENSG00000130810PPAN9973.684ENSELUG00000024160ppan8258.372Esox_lucius
ENSG00000130810PPAN9989.474ENSFCAG00000009388-8778.540Felis_catus
ENSG00000130810PPAN10086.598ENSFDAG00000008458-9856.554Fukomys_damarensis
ENSG00000130810PPAN9971.292ENSFHEG00000001554ppan7859.809Fundulus_heteroclitus
ENSG00000130810PPAN9972.727ENSGMOG00000003431ppan7759.804Gadus_morhua
ENSG00000130810PPAN9970.000ENSGALG00000051597-8463.158Gallus_gallus
ENSG00000130810PPAN9971.292ENSGAFG00000015832ppan8257.753Gambusia_affinis
ENSG00000130810PPAN9973.206ENSGACG00000013723ppan8456.923Gasterosteus_aculeatus
ENSG00000130810PPAN10080.476ENSGAGG00000009455-7668.585Gopherus_agassizii
ENSG00000130810PPAN99100.000ENSGGOG00000039459PPAN10098.810Gorilla_gorilla
ENSG00000130810PPAN9969.378ENSHBUG00000021830ppan8059.670Haplochromis_burtoni
ENSG00000130810PPAN9992.823ENSHGLG00000006964-9678.855Heterocephalus_glaber_female
ENSG00000130810PPAN9992.823ENSHGLG00100011618-9678.855Heterocephalus_glaber_male
ENSG00000130810PPAN9968.750ENSHCOG00000016751ppan7547.857Hippocampus_comes
ENSG00000130810PPAN9975.120ENSIPUG00000005082ppan7461.594Ictalurus_punctatus
ENSG00000130810PPAN9995.215ENSSTOG00000010828-9679.341Ictidomys_tridecemlineatus
ENSG00000130810PPAN9993.780ENSJJAG00000016362Ppan9778.587Jaculus_jaculus
ENSG00000130810PPAN9968.900ENSKMAG00000016509ppan7659.903Kryptolebias_marmoratus
ENSG00000130810PPAN9971.770ENSLBEG00000020897ppan9461.500Labrus_bergylta
ENSG00000130810PPAN9973.958ENSLACG00000001451ppan8857.757Latimeria_chalumnae
ENSG00000130810PPAN9974.163ENSLOCG00000007381ppan8658.952Lepisosteus_oculatus
ENSG00000130810PPAN10092.784ENSLAFG00000016399-9678.761Loxodonta_africana
ENSG00000130810PPAN9999.522ENSMFAG00000042854-9695.796Macaca_fascicularis
ENSG00000130810PPAN10098.969ENSMMUG00000017211PPAN10098.969Macaca_mulatta
ENSG00000130810PPAN9999.522ENSMNEG00000031363-9696.018Macaca_nemestrina
ENSG00000130810PPAN9999.043ENSMLEG00000042991-9695.354Mandrillus_leucophaeus
ENSG00000130810PPAN9973.206ENSMAMG00000012418ppan7959.811Mastacembelus_armatus
ENSG00000130810PPAN9969.378ENSMZEG00005018872ppan9861.000Maylandia_zebra
ENSG00000130810PPAN9992.823ENSMAUG00000000310Ppan9778.384Mesocricetus_auratus
ENSG00000130810PPAN9995.215ENSMICG00000047321-9680.617Microcebus_murinus
ENSG00000130810PPAN9989.952ENSMOCG00000016402Ppan9777.024Microtus_ochrogaster
ENSG00000130810PPAN9972.249ENSMMOG00000011584ppan8658.036Mola_mola
ENSG00000130810PPAN9985.167ENSMODG00000005158PPAN9569.783Monodelphis_domestica
ENSG00000130810PPAN9973.684ENSMALG00000015931ppan7861.412Monopterus_albus
ENSG00000130810PPAN9989.952MGP_CAROLIEiJ_G0031850Ppan9776.035Mus_caroli
ENSG00000130810PPAN9989.952ENSMUSG00000004100Ppan8888.824Mus_musculus
ENSG00000130810PPAN9989.952MGP_PahariEiJ_G0014716Ppan9376.770Mus_pahari
ENSG00000130810PPAN9989.952MGP_SPRETEiJ_G0032974Ppan9776.688Mus_spretus
ENSG00000130810PPAN9995.694ENSMPUG00000006866-9580.659Mustela_putorius_furo
ENSG00000130810PPAN9993.780ENSMLUG00000014186-9679.212Myotis_lucifugus
ENSG00000130810PPAN8292.486ENSNGAG00000012813Ppan9575.281Nannospalax_galili
ENSG00000130810PPAN9969.856ENSNBRG00000008460ppan8059.670Neolamprologus_brichardi
ENSG00000130810PPAN99100.000ENSNLEG00000012048-10097.252Nomascus_leucogenys
ENSG00000130810PPAN9984.689ENSMEUG00000007968-9967.333Notamacropus_eugenii
ENSG00000130810PPAN9995.215ENSOPRG00000006982-5680.866Ochotona_princeps
ENSG00000130810PPAN9992.344ENSODEG00000016743-9677.753Octodon_degus
ENSG00000130810PPAN9970.335ENSONIG00000001598ppan8059.906Oreochromis_niloticus
ENSG00000130810PPAN9979.904ENSOANG00000006740PPAN8568.396Ornithorhynchus_anatinus
ENSG00000130810PPAN9970.813ENSORLG00000005634ppan8658.797Oryzias_latipes
ENSG00000130810PPAN9970.813ENSORLG00020003966ppan8658.797Oryzias_latipes_hni
ENSG00000130810PPAN9970.813ENSORLG00015016869ppan8661.988Oryzias_latipes_hsok
ENSG00000130810PPAN9970.813ENSOMEG00000023943ppan8658.575Oryzias_melastigma
ENSG00000130810PPAN10092.784ENSOGAG00000014454-9678.936Otolemur_garnettii
ENSG00000130810PPAN9995.694ENSOARG00000014981-8775.485Ovis_aries
ENSG00000130810PPAN10099.366ENSPPAG00000039744-10099.366Pan_paniscus
ENSG00000130810PPAN9995.215ENSPPRG00000023895-9680.263Panthera_pardus
ENSG00000130810PPAN9995.215ENSPTIG00000015960-9679.462Panthera_tigris_altaica
ENSG00000130810PPAN10099.154ENSPTRG00000010459PPAN10099.154Pan_troglodytes
ENSG00000130810PPAN9999.043ENSPANG00000005948-9695.796Papio_anubis
ENSG00000130810PPAN9973.206ENSPMGG00000001212ppan8159.207Periophthalmus_magnuspinnatus
ENSG00000130810PPAN9992.344ENSPEMG00000015393Ppan9777.533Peromyscus_maniculatus_bairdii
ENSG00000130810PPAN10084.286ENSPCIG00000018786-8567.686Phascolarctos_cinereus
ENSG00000130810PPAN9972.249ENSPFOG00000005396ppan8257.978Poecilia_formosa
ENSG00000130810PPAN9971.770ENSPLAG00000021445ppan8257.753Poecilia_latipinna
ENSG00000130810PPAN9972.249ENSPMEG00000011625ppan8258.202Poecilia_mexicana
ENSG00000130810PPAN9972.249ENSPREG00000006330ppan8257.978Poecilia_reticulata
ENSG00000130810PPAN9999.043ENSPPYG00000009543-5695.475Pongo_abelii
ENSG00000130810PPAN9993.237ENSPCAG00000007303-9675.897Procavia_capensis
ENSG00000130810PPAN10094.845ENSPCOG00000027096-9681.978Propithecus_coquereli
ENSG00000130810PPAN10092.784ENSPVAG00000003673-9577.802Pteropus_vampyrus
ENSG00000130810PPAN9969.378ENSPNYG00000013872ppan8059.434Pundamilia_nyererei
ENSG00000130810PPAN9975.120ENSPNAG00000017058ppan7761.611Pygocentrus_nattereri
ENSG00000130810PPAN9989.952ENSRNOG00000020608Ppan9775.817Rattus_norvegicus
ENSG00000130810PPAN9999.522ENSRBIG00000041320-9694.912Rhinopithecus_bieti
ENSG00000130810PPAN9999.043ENSRROG00000034660-9694.690Rhinopithecus_roxellana
ENSG00000130810PPAN9999.043ENSRROG00000038245-10097.090Rhinopithecus_roxellana
ENSG00000130810PPAN8648.837YDR312W-9034.856Saccharomyces_cerevisiae
ENSG00000130810PPAN8648.837YHR066W-9535.104Saccharomyces_cerevisiae
ENSG00000130810PPAN9998.086ENSSBOG00000026246-9688.053Saimiri_boliviensis_boliviensis
ENSG00000130810PPAN9984.689ENSSHAG00000009305-9567.939Sarcophilus_harrisii
ENSG00000130810PPAN9971.770ENSSFOG00015023726ppan8360.789Scleropages_formosus
ENSG00000130810PPAN9670.647ENSSMAG00000004098ppan8258.239Scophthalmus_maximus
ENSG00000130810PPAN9672.637ENSSDUG00000021301ppan7861.229Seriola_dumerili
ENSG00000130810PPAN9672.637ENSSLDG00000016106ppan8159.637Seriola_lalandi_dorsalis
ENSG00000130810PPAN9972.727ENSSPAG00000000160ppan8559.052Stegastes_partitus
ENSG00000130810PPAN9995.694ENSSSCG00000013662PPAN9680.702Sus_scrofa
ENSG00000130810PPAN5669.492ENSTGUG00000016037-10069.492Taeniopygia_guttata
ENSG00000130810PPAN9972.249ENSTRUG00000007656ppan8558.575Takifugu_rubripes
ENSG00000130810PPAN9972.727ENSTNIG00000018564ppan8861.779Tetraodon_nigroviridis
ENSG00000130810PPAN10088.660ENSTBEG00000002721-5191.736Tupaia_belangeri
ENSG00000130810PPAN10091.753ENSTTRG00000004530-9673.904Tursiops_truncatus
ENSG00000130810PPAN9994.737ENSUAMG00000007239-9390.625Ursus_americanus
ENSG00000130810PPAN9995.694ENSVVUG00000028309-9679.739Vulpes_vulpes
ENSG00000130810PPAN9979.426ENSXETG00000022055ppan7762.411Xenopus_tropicalis
ENSG00000130810PPAN9971.770ENSXMAG00000028708ppan8258.108Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000027ribosomal large subunit assembly21873635.IBAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005634nucleus15302935.IDAComponent
GO:0005730nucleolus-IEAComponent
GO:0030687preribosome, large subunit precursor21873635.IBAComponent

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
CESCchr1910111092Missense_Mutationrs201530848R450Q0.44
CESCchr19101112013'UTRnovel0.59
SKCMchr1910111110Missense_MutationnovelS456F0.17
UCECchr1910111133Missense_MutationnovelG464C0.09
UCECchr1910106435Intronnovel0.5
UCECchr19101112523'UTRnovel0.33
UCECchr1910111092Frame_Shift_DelnovelR453Efs*600.36

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
READDEL0.0970.23023
THCADEL0.0140.10598

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

STAD0.013

Kaplan-Meier Survival Analysis

ACC0.00041

Kaplan-Meier Survival Analysis

HNSC0.016

Kaplan-Meier Survival Analysis

SKCM0.024

Kaplan-Meier Survival Analysis

PRAD0.018

Kaplan-Meier Survival Analysis

PAAD0.022

Kaplan-Meier Survival Analysis

BLCA0.0013

Kaplan-Meier Survival Analysis

LGG0.012

Kaplan-Meier Survival Analysis

UVM0.017

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742


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