EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000131013 (Gene tree)
Gene ID
85313
Gene Symbol
PPIL4
Alias
N
Full Name
peptidylprolyl isomerase like 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
41,608 bases
Position
chr6:149,504,495-149,546,102
Accession
15702
RBP type
canonical RBP
Summary
This gene is a member of the cyclophilin family of peptidylprolyl isomerases. The cyclophilins are a highly conserved family, members of which play an important role in protein folding, immunosuppression by cyclosporin A, and infection of HIV-1 virions. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000253329RRM_1PF00076.227.9e-1711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
11978968Molecular cloning, structure and expression of a novel nuclear RNA-binding cyclophilin-like gene (PPIL4) from human fetal brain.Cytogenet Cell Genet2001Zeng L-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000253329PPIL4-2012232-ENSP00000253329492 (aa)-Q8WUA2
ENST00000340881PPIL4-2021089-ENSP00000344128127 (aa)-Q5T4S2
Gene Model
Click here to download ENSG00000131013's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000131013Arthritis, Rheumatoid5E-824390342
ENSG00000131013Arthritis, Rheumatoid3E-924390342
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000131013rs93735946149513438TRheumatoid arthritis24390342[1.06-1.12]1.09EFO_0000685
ENSG00000131013rs93735946149513438TRheumatoid arthritis24390342[1.07-1.15]1.11EFO_0000685
ENSG00000131013rs93735946149513438TRheumatoid arthritis30423114[0.069-0.174] unit increase0.12164EFO_0000685
ENSG00000131013rs93735946149513438TRheumatoid arthritis30423114[0.042-0.148] unit increase0.0949502EFO_0000685
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000131013's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000131013PPIL47684.140ENSAPOG00000005904ppil47884.140Acanthochromis_polyacanthus
ENSG00000131013PPIL410097.571ENSAMEG00000018278PPIL410097.571Ailuropoda_melanoleuca
ENSG00000131013PPIL47386.389ENSACIG00000006837ppil48186.389Amphilophus_citrinellus
ENSG00000131013PPIL47783.598ENSAOCG00000014541ppil48684.409Amphiprion_ocellaris
ENSG00000131013PPIL410071.429ENSAPEG00000004245ppil47984.409Amphiprion_percula
ENSG00000131013PPIL48181.000ENSATEG00000013141ppil49886.689Anabas_testudineus
ENSG00000131013PPIL49580.384ENSAPLG00000008437PPIL410079.531Anas_platyrhynchos
ENSG00000131013PPIL410077.846ENSACAG00000006936PPIL410077.439Anolis_carolinensis
ENSG00000131013PPIL410098.780ENSANAG00000006499PPIL410098.780Aotus_nancymaae
ENSG00000131013PPIL47782.850ENSACLG00000018467ppil48084.722Astatotilapia_calliptera
ENSG00000131013PPIL47484.573ENSAMXG00000014167ppil49884.228Astyanax_mexicanus
ENSG00000131013PPIL410097.561ENSBTAG00000016980PPIL410097.561Bos_taurus
ENSG00000131013PPIL46760.000WBGene00000890sig-77560.748Caenorhabditis_elegans
ENSG00000131013PPIL410098.374ENSCJAG00000019613PPIL410098.374Callithrix_jacchus
ENSG00000131013PPIL410098.171ENSCAFG00000000379PPIL49498.171Canis_familiaris
ENSG00000131013PPIL410098.171ENSCAFG00020013550PPIL410098.171Canis_lupus_dingo
ENSG00000131013PPIL410097.764ENSCHIG00000010600PPIL49697.764Capra_hircus
ENSG00000131013PPIL410097.358ENSTSYG00000009860PPIL410097.358Carlito_syrichta
ENSG00000131013PPIL48680.541ENSCAPG00000004550PPIL49768.103Cavia_aperea
ENSG00000131013PPIL410096.545ENSCPOG00000032871PPIL410096.545Cavia_porcellus
ENSG00000131013PPIL410098.374ENSCCAG00000022598PPIL410098.374Cebus_capucinus
ENSG00000131013PPIL410098.780ENSCATG00000039936PPIL410098.780Cercocebus_atys
ENSG00000131013PPIL410096.545ENSCLAG00000003991PPIL410096.545Chinchilla_lanigera
ENSG00000131013PPIL410098.780ENSCSAG00000017219PPIL410098.780Chlorocebus_sabaeus
ENSG00000131013PPIL46695.673ENSCHOG00000000236PPIL47494.872Choloepus_hoffmanni
ENSG00000131013PPIL410081.339ENSCPBG00000016612PPIL410081.339Chrysemys_picta_bellii
ENSG00000131013PPIL49753.416ENSCING00000006773-7171.077Ciona_intestinalis
ENSG00000131013PPIL46670.821ENSCSAVG00000010619-7265.538Ciona_savignyi
ENSG00000131013PPIL410097.154ENSCGRG00001019623Ppil410097.154Cricetulus_griseus_chok1gshd
ENSG00000131013PPIL410097.154ENSCGRG00000003980Ppil410097.154Cricetulus_griseus_crigri
ENSG00000131013PPIL410068.889ENSCSEG00000015812ppil49766.388Cynoglossus_semilaevis
ENSG00000131013PPIL47685.215ENSCVAG00000001078ppil47985.215Cyprinodon_variegatus
ENSG00000131013PPIL49870.041ENSDARG00000043854ppil48283.914Danio_rerio
ENSG00000131013PPIL410097.358ENSDNOG00000040219PPIL410097.358Dasypus_novemcinctus
ENSG00000131013PPIL410096.545ENSDORG00000007186Ppil410096.545Dipodomys_ordii
ENSG00000131013PPIL410098.577ENSEASG00005008935PPIL410098.577Equus_asinus_asinus
ENSG00000131013PPIL410098.374ENSECAG00000021819PPIL410098.374Equus_caballus
ENSG00000131013PPIL49593.348ENSEEUG00000000959PPIL410093.089Erinaceus_europaeus
ENSG00000131013PPIL410070.588ENSELUG00000018746ppil49967.708Esox_lucius
ENSG00000131013PPIL410097.764ENSFCAG00000046720PPIL410097.764Felis_catus
ENSG00000131013PPIL48878.851ENSFALG00000013130PPIL49978.391Ficedula_albicollis
ENSG00000131013PPIL410097.154ENSFDAG00000008146PPIL410097.154Fukomys_damarensis
ENSG00000131013PPIL47783.113ENSFHEG00000011503ppil48083.651Fundulus_heteroclitus
ENSG00000131013PPIL47579.620ENSGMOG00000006191ppil49279.032Gadus_morhua
ENSG00000131013PPIL410080.081ENSGALG00000012364PPIL49580.488Gallus_gallus
ENSG00000131013PPIL47783.069ENSGAFG00000009521ppil48783.871Gambusia_affinis
ENSG00000131013PPIL49374.348ENSGACG00000006639ppil49970.348Gasterosteus_aculeatus
ENSG00000131013PPIL410081.339ENSGAGG00000005926PPIL410081.339Gopherus_agassizii
ENSG00000131013PPIL410099.593ENSGGOG00000009686PPIL410099.593Gorilla_gorilla
ENSG00000131013PPIL47782.850ENSHBUG00000021518ppil47984.530Haplochromis_burtoni
ENSG00000131013PPIL410097.764ENSHGLG00000007609PPIL410097.764Heterocephalus_glaber_female
ENSG00000131013PPIL410097.764ENSHGLG00100008308PPIL410097.764Heterocephalus_glaber_male
ENSG00000131013PPIL410068.651ENSIPUG00000006626PPIL49870.564Ictalurus_punctatus
ENSG00000131013PPIL410097.561ENSSTOG00000013980PPIL410097.561Ictidomys_tridecemlineatus
ENSG00000131013PPIL410091.886ENSJJAG00000017619Ppil410091.886Jaculus_jaculus
ENSG00000131013PPIL47682.353ENSKMAG00000014367ppil49769.182Kryptolebias_marmoratus
ENSG00000131013PPIL410069.309ENSLBEG00000012172ppil49570.332Labrus_bergylta
ENSG00000131013PPIL49974.343ENSLACG00000016551PPIL49775.726Latimeria_chalumnae
ENSG00000131013PPIL48579.665ENSLOCG00000017002ppil49773.849Lepisosteus_oculatus
ENSG00000131013PPIL410090.467ENSLAFG00000026804PPIL410090.467Loxodonta_africana
ENSG00000131013PPIL410098.780ENSMFAG00000032721PPIL410098.780Macaca_fascicularis
ENSG00000131013PPIL410098.780ENSMMUG00000023067PPIL410098.780Macaca_mulatta
ENSG00000131013PPIL410098.780ENSMNEG00000042362PPIL410098.780Macaca_nemestrina
ENSG00000131013PPIL410098.780ENSMLEG00000041942PPIL410098.780Mandrillus_leucophaeus
ENSG00000131013PPIL410073.022ENSMAMG00000004525ppil47984.140Mastacembelus_armatus
ENSG00000131013PPIL47782.850ENSMZEG00005015546ppil48084.722Maylandia_zebra
ENSG00000131013PPIL49578.981ENSMGAG00000012596PPIL410079.406Meleagris_gallopavo
ENSG00000131013PPIL410097.358ENSMAUG00000015059Ppil410097.358Mesocricetus_auratus
ENSG00000131013PPIL410089.024ENSMICG00000006287PPIL410089.024Microcebus_murinus
ENSG00000131013PPIL410097.154ENSMOCG00000012720-10097.154Microtus_ochrogaster
ENSG00000131013PPIL410081.707ENSMOCG00000000256-9882.114Microtus_ochrogaster
ENSG00000131013PPIL47582.016ENSMMOG00000014859ppil48282.016Mola_mola
ENSG00000131013PPIL410086.179ENSMODG00000016825PPIL410086.179Monodelphis_domestica
ENSG00000131013PPIL410070.385ENSMALG00000018887ppil47884.140Monopterus_albus
ENSG00000131013PPIL49596.137MGP_CAROLIEiJ_G0015103Ppil410096.138Mus_caroli
ENSG00000131013PPIL410096.748ENSMUSG00000015757Ppil410096.748Mus_musculus
ENSG00000131013PPIL410097.154MGP_PahariEiJ_G0023722Ppil410097.154Mus_pahari
ENSG00000131013PPIL410096.545MGP_SPRETEiJ_G0015910Ppil410096.545Mus_spretus
ENSG00000131013PPIL410098.171ENSMPUG00000018073PPIL410098.171Mustela_putorius_furo
ENSG00000131013PPIL410095.951ENSMLUG00000002766PPIL410095.951Myotis_lucifugus
ENSG00000131013PPIL410096.748ENSNGAG00000008801Ppil410096.748Nannospalax_galili
ENSG00000131013PPIL47782.850ENSNBRG00000010947ppil47983.871Neolamprologus_brichardi
ENSG00000131013PPIL48399.511ENSNLEG00000015316PPIL49699.511Nomascus_leucogenys
ENSG00000131013PPIL47994.118ENSOPRG00000005619PPIL48094.118Ochotona_princeps
ENSG00000131013PPIL410096.341ENSODEG00000002499PPIL410096.341Octodon_degus
ENSG00000131013PPIL47781.510ENSONIG00000011400ppil49282.493Oreochromis_niloticus
ENSG00000131013PPIL49977.530ENSOANG00000001063PPIL49777.500Ornithorhynchus_anatinus
ENSG00000131013PPIL410096.748ENSOCUG00000007696PPIL410096.748Oryctolagus_cuniculus
ENSG00000131013PPIL47685.753ENSORLG00000015310ppil48580.978Oryzias_latipes
ENSG00000131013PPIL47686.022ENSORLG00020008558ppil49289.310Oryzias_latipes_hni
ENSG00000131013PPIL47686.022ENSORLG00015003655ppil49289.310Oryzias_latipes_hsok
ENSG00000131013PPIL47784.433ENSOMEG00000011713ppil49688.276Oryzias_melastigma
ENSG00000131013PPIL49397.403ENSOGAG00000014153-10097.403Otolemur_garnettii
ENSG00000131013PPIL49982.688ENSOGAG00000025753-9683.054Otolemur_garnettii
ENSG00000131013PPIL410097.764ENSOARG00000002675PPIL410097.764Ovis_aries
ENSG00000131013PPIL410099.797ENSPPAG00000042154PPIL410099.797Pan_paniscus
ENSG00000131013PPIL410097.764ENSPPRG00000004682PPIL410097.764Panthera_pardus
ENSG00000131013PPIL49897.292ENSPTIG00000014238PPIL48197.292Panthera_tigris_altaica
ENSG00000131013PPIL410099.797ENSPTRG00000018692PPIL410099.797Pan_troglodytes
ENSG00000131013PPIL410098.780ENSPANG00000017996PPIL410098.780Papio_anubis
ENSG00000131013PPIL49970.000ENSPKIG00000019748ppil49585.172Paramormyrops_kingsleyae
ENSG00000131013PPIL48177.889ENSPSIG00000016651PPIL49677.865Pelodiscus_sinensis
ENSG00000131013PPIL49172.222ENSPMGG00000002277ppil48282.927Periophthalmus_magnuspinnatus
ENSG00000131013PPIL410097.154ENSPEMG00000010912Ppil410097.154Peromyscus_maniculatus_bairdii
ENSG00000131013PPIL410085.425ENSPCIG00000025561PPIL410085.569Phascolarctos_cinereus
ENSG00000131013PPIL48976.765ENSPFOG00000004145ppil49970.902Poecilia_formosa
ENSG00000131013PPIL47782.895ENSPLAG00000001207ppil47984.409Poecilia_latipinna
ENSG00000131013PPIL47782.895ENSPMEG00000009249ppil49886.254Poecilia_mexicana
ENSG00000131013PPIL47782.368ENSPREG00000020355ppil47883.871Poecilia_reticulata
ENSG00000131013PPIL47498.898ENSPPYG00000029525-9998.898Pongo_abelii
ENSG00000131013PPIL49581.237ENSPPYG00000017785-9779.515Pongo_abelii
ENSG00000131013PPIL48098.795ENSPCAG00000008203PPIL48598.795Procavia_capensis
ENSG00000131013PPIL410098.780ENSPCOG00000016997PPIL410098.780Propithecus_coquereli
ENSG00000131013PPIL410097.561ENSPVAG00000000746PPIL410097.561Pteropus_vampyrus
ENSG00000131013PPIL47782.850ENSPNYG00000010608ppil48084.722Pundamilia_nyererei
ENSG00000131013PPIL410069.715ENSPNAG00000002199ppil47884.946Pygocentrus_nattereri
ENSG00000131013PPIL410097.561ENSRNOG00000015552Ppil410097.561Rattus_norvegicus
ENSG00000131013PPIL410095.935ENSRBIG00000043467PPIL410095.935Rhinopithecus_bieti
ENSG00000131013PPIL410098.780ENSRROG00000002923PPIL410098.780Rhinopithecus_roxellana
ENSG00000131013PPIL410098.577ENSSBOG00000004498PPIL410098.577Saimiri_boliviensis_boliviensis
ENSG00000131013PPIL410084.990ENSSHAG00000017140PPIL49785.386Sarcophilus_harrisii
ENSG00000131013PPIL410071.660ENSSFOG00015020750ppil410071.992Scleropages_formosus
ENSG00000131013PPIL410071.341ENSSMAG00000017653ppil49785.862Scophthalmus_maximus
ENSG00000131013PPIL410070.683ENSSDUG00000010647ppil48184.444Seriola_dumerili
ENSG00000131013PPIL410070.732ENSSLDG00000021975ppil48183.889Seriola_lalandi_dorsalis
ENSG00000131013PPIL410090.707ENSSARG00000011244PPIL410090.505Sorex_araneus
ENSG00000131013PPIL46790.060ENSSPUG00000005655PPIL47290.938Sphenodon_punctatus
ENSG00000131013PPIL410069.838ENSSPAG00000017442ppil48484.722Stegastes_partitus
ENSG00000131013PPIL410097.561ENSSSCG00000028867PPIL410097.561Sus_scrofa
ENSG00000131013PPIL410080.691ENSTGUG00000010655-10080.285Taeniopygia_guttata
ENSG00000131013PPIL49369.584ENSTRUG00000006670ppil49184.247Takifugu_rubripes
ENSG00000131013PPIL47874.419ENSTNIG00000002706ppil49476.882Tetraodon_nigroviridis
ENSG00000131013PPIL49574.359ENSTBEG00000001467PPIL410074.359Tupaia_belangeri
ENSG00000131013PPIL410086.789ENSTTRG00000006014PPIL410086.789Tursiops_truncatus
ENSG00000131013PPIL49597.868ENSUMAG00000002774PPIL49897.868Ursus_maritimus
ENSG00000131013PPIL410088.821ENSVPAG00000005157PPIL410088.821Vicugna_pacos
ENSG00000131013PPIL410097.967ENSVVUG00000005119PPIL49497.967Vulpes_vulpes
ENSG00000131013PPIL410070.994ENSXETG00000021385ppil47985.135Xenopus_tropicalis
ENSG00000131013PPIL410069.636ENSXCOG00000001316ppil48184.444Xiphophorus_couchianus
ENSG00000131013PPIL410069.838ENSXMAG00000004998ppil48383.333Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000413protein peptidyl-prolyl isomerization-IEAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003755peptidyl-prolyl cis-trans isomerase activity-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005829cytosol-IDAComponent
GO:1901407regulation of phosphorylation of RNA polymerase II C-terminal domain21873635.IBAProcess

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