EuRBPDB

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000131732 (Gene tree)
Gene ID: 84240
Gene Symbol: ZCCHC9
Alias: DKFZp761J139|PPP1R41
Full Name: zinc finger CCHC-type containing 9
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 11,762 bases
Position: chr5:81,301,583-81,313,344
Accession: 25424
RBP type: canonical RBP
Summary: (Zinc Finger CCHC-Type Containing 9) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZCCHC7.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000254037	zf-CCHC	PF00098.23	2.7e-14	1	2
ENSP00000254037	zf-CCHC	PF00098.23	2.7e-14	2	2
ENSP00000369546	zf-CCHC	PF00098.23	2.7e-14	1	2
ENSP00000369546	zf-CCHC	PF00098.23	2.7e-14	2	2
ENSP00000385047	zf-CCHC	PF00098.23	2.7e-14	1	2
ENSP00000385047	zf-CCHC	PF00098.23	2.7e-14	2	2
ENSP00000412637	zf-CCHC	PF00098.23	2.7e-14	1	2
ENSP00000412637	zf-CCHC	PF00098.23	2.7e-14	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
20711761	1H, 13C, and 15N chemical shift assignments of ZCCHC9.	Biomol NMR Assign	2011 Apr	Sanudo M	doi: 10.1007/s12104-010-9257-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000507402	ZCCHC9-208	768	-	-	- (aa)	-	-
ENST00000254037	ZCCHC9-201	4606	-	ENSP00000254037	271 (aa)	-	Q8N567
ENST00000506458	ZCCHC9-207	818	-	-	- (aa)	-	-
ENST00000510227	ZCCHC9-209	870	-	-	- (aa)	-	-
ENST00000504502	ZCCHC9-205	401	-	-	- (aa)	-	-
ENST00000407610	ZCCHC9-203	1555	XM_005248616	ENSP00000385047	271 (aa)	XP_005248673	Q8N567
ENST00000438268	ZCCHC9-204	1248	-	ENSP00000412637	271 (aa)	-	Q8N567
ENST00000380199	ZCCHC9-202	1372	-	ENSP00000369546	271 (aa)	-	Q8N567
ENST00000505860	ZCCHC9-206	538	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000131732's gene model file

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000131732	rs35668868	5	81303288	?	Cognitive empathy	28584286	[0.07-0.18] unit increase	0.1253	EFO_0009183

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000131732's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000131732	ZCCHC9	100	53.285	ENSAPOG00000010630	zcchc9	100	53.261	Acanthochromis_polyacanthus
ENSG00000131732	ZCCHC9	100	92.620	ENSAMEG00000015854	ZCCHC9	100	92.620	Ailuropoda_melanoleuca
ENSG00000131732	ZCCHC9	100	54.613	ENSACIG00000008121	zcchc9	100	52.143	Amphilophus_citrinellus
ENSG00000131732	ZCCHC9	100	53.214	ENSAOCG00000011664	zcchc9	100	52.669	Amphiprion_ocellaris
ENSG00000131732	ZCCHC9	100	54.182	ENSAPEG00000021681	zcchc9	95	53.623	Amphiprion_percula
ENSG00000131732	ZCCHC9	100	53.004	ENSATEG00000004480	zcchc9	100	54.317	Anabas_testudineus
ENSG00000131732	ZCCHC9	52	79.433	ENSAPLG00000005968	ZCCHC9	99	79.433	Anas_platyrhynchos
ENSG00000131732	ZCCHC9	100	70.221	ENSACAG00000010965	ZCCHC9	100	70.221	Anolis_carolinensis
ENSG00000131732	ZCCHC9	100	81.250	ENSANAG00000022269	-	100	80.882	Aotus_nancymaae
ENSG00000131732	ZCCHC9	100	95.941	ENSANAG00000021689	-	100	95.941	Aotus_nancymaae
ENSG00000131732	ZCCHC9	100	53.957	ENSACLG00000009042	zcchc9	95	55.197	Astatotilapia_calliptera
ENSG00000131732	ZCCHC9	86	45.161	ENSAMXG00000008493	zcchc9	55	65.644	Astyanax_mexicanus
ENSG00000131732	ZCCHC9	88	51.883	ENSAMXG00000043747	zcchc9	87	50.628	Astyanax_mexicanus
ENSG00000131732	ZCCHC9	100	92.620	ENSBTAG00000005265	ZCCHC9	100	92.620	Bos_taurus
ENSG00000131732	ZCCHC9	100	95.941	ENSCJAG00000042621	ZCCHC9	100	95.941	Callithrix_jacchus
ENSG00000131732	ZCCHC9	100	92.989	ENSCAFG00000008703	ZCCHC9	100	92.989	Canis_familiaris
ENSG00000131732	ZCCHC9	100	92.989	ENSCAFG00020002911	ZCCHC9	100	92.989	Canis_lupus_dingo
ENSG00000131732	ZCCHC9	100	92.620	ENSCHIG00000024514	ZCCHC9	100	92.620	Capra_hircus
ENSG00000131732	ZCCHC9	100	74.539	ENSTSYG00000034641	-	100	73.801	Carlito_syrichta
ENSG00000131732	ZCCHC9	100	88.930	ENSTSYG00000012423	-	99	88.930	Carlito_syrichta
ENSG00000131732	ZCCHC9	100	85.609	ENSCPOG00000003947	ZCCHC9	100	85.609	Cavia_porcellus
ENSG00000131732	ZCCHC9	100	97.048	ENSCCAG00000034082	ZCCHC9	100	97.048	Cebus_capucinus
ENSG00000131732	ZCCHC9	100	97.786	ENSCATG00000042586	-	100	97.786	Cercocebus_atys
ENSG00000131732	ZCCHC9	100	86.347	ENSCLAG00000005289	ZCCHC9	100	86.347	Chinchilla_lanigera
ENSG00000131732	ZCCHC9	100	93.727	ENSCSAG00000019139	-	100	94.096	Chlorocebus_sabaeus
ENSG00000131732	ZCCHC9	100	97.417	ENSCSAG00000014955	-	100	97.417	Chlorocebus_sabaeus
ENSG00000131732	ZCCHC9	100	91.882	ENSCHOG00000005268	ZCCHC9	100	91.882	Choloepus_hoffmanni
ENSG00000131732	ZCCHC9	100	77.860	ENSCPBG00000010819	ZCCHC9	100	77.860	Chrysemys_picta_bellii
ENSG00000131732	ZCCHC9	62	53.672	ENSCING00000008173	-	79	53.672	Ciona_intestinalis
ENSG00000131732	ZCCHC9	66	48.404	ENSCSAVG00000010478	-	83	48.404	Ciona_savignyi
ENSG00000131732	ZCCHC9	51	30.159	ENSCSAVG00000001395	-	87	30.233	Ciona_savignyi
ENSG00000131732	ZCCHC9	100	97.417	ENSCANG00000025716	-	100	97.417	Colobus_angolensis_palliatus
ENSG00000131732	ZCCHC9	100	83.764	ENSCGRG00001018367	Zcchc9	100	83.764	Cricetulus_griseus_chok1gshd
ENSG00000131732	ZCCHC9	100	83.764	ENSCGRG00000016428	Zcchc9	100	83.764	Cricetulus_griseus_crigri
ENSG00000131732	ZCCHC9	100	54.909	ENSCSEG00000007145	zcchc9	100	54.909	Cynoglossus_semilaevis
ENSG00000131732	ZCCHC9	100	52.878	ENSCVAG00000019704	zcchc9	100	52.878	Cyprinodon_variegatus
ENSG00000131732	ZCCHC9	98	50.376	ENSDARG00000007531	zcchc9	99	50.000	Danio_rerio
ENSG00000131732	ZCCHC9	100	91.513	ENSDNOG00000016708	ZCCHC9	100	91.513	Dasypus_novemcinctus
ENSG00000131732	ZCCHC9	100	91.513	ENSDORG00000001300	Zcchc9	100	91.513	Dipodomys_ordii
ENSG00000131732	ZCCHC9	100	69.373	ENSETEG00000003838	ZCCHC9	100	69.373	Echinops_telfairi
ENSG00000131732	ZCCHC9	71	46.701	ENSEBUG00000015943	zcchc9	84	47.826	Eptatretus_burgeri
ENSG00000131732	ZCCHC9	100	91.513	ENSEASG00005004088	ZCCHC9	100	91.513	Equus_asinus_asinus
ENSG00000131732	ZCCHC9	100	91.513	ENSECAG00000023186	ZCCHC9	100	91.513	Equus_caballus
ENSG00000131732	ZCCHC9	53	88.112	ENSEEUG00000010726	-	100	88.112	Erinaceus_europaeus
ENSG00000131732	ZCCHC9	93	46.099	ENSELUG00000005654	zcchc9	100	47.176	Esox_lucius
ENSG00000131732	ZCCHC9	100	92.251	ENSFCAG00000033419	ZCCHC9	100	92.251	Felis_catus
ENSG00000131732	ZCCHC9	100	53.237	ENSFHEG00000012337	zcchc9	100	53.285	Fundulus_heteroclitus
ENSG00000131732	ZCCHC9	79	60.280	ENSGMOG00000016323	zcchc9	97	59.420	Gadus_morhua
ENSG00000131732	ZCCHC9	100	59.041	ENSGALG00000015603	ZCCHC9	100	58.672	Gallus_gallus
ENSG00000131732	ZCCHC9	100	50.735	ENSGACG00000015540	zcchc9	100	51.103	Gasterosteus_aculeatus
ENSG00000131732	ZCCHC9	86	77.586	ENSGAGG00000014018	ZCCHC9	95	77.586	Gopherus_agassizii
ENSG00000131732	ZCCHC9	100	100.000	ENSGGOG00000013790	ZCCHC9	100	100.000	Gorilla_gorilla
ENSG00000131732	ZCCHC9	53	67.133	ENSHBUG00000007612	zcchc9	98	64.957	Haplochromis_burtoni
ENSG00000131732	ZCCHC9	100	52.555	ENSHCOG00000001696	zcchc9	100	52.381	Hippocampus_comes
ENSG00000131732	ZCCHC9	96	49.231	ENSIPUG00000008877	zcchc9	99	48.148	Ictalurus_punctatus
ENSG00000131732	ZCCHC9	100	92.620	ENSSTOG00000001407	ZCCHC9	100	92.620	Ictidomys_tridecemlineatus
ENSG00000131732	ZCCHC9	100	85.609	ENSJJAG00000015479	Zcchc9	100	85.609	Jaculus_jaculus
ENSG00000131732	ZCCHC9	100	53.623	ENSKMAG00000008955	zcchc9	100	55.072	Kryptolebias_marmoratus
ENSG00000131732	ZCCHC9	100	53.285	ENSLBEG00000007610	zcchc9	100	54.015	Labrus_bergylta
ENSG00000131732	ZCCHC9	100	64.103	ENSLACG00000009223	ZCCHC9	100	63.139	Latimeria_chalumnae
ENSG00000131732	ZCCHC9	100	54.044	ENSLOCG00000005331	zcchc9	100	54.044	Lepisosteus_oculatus
ENSG00000131732	ZCCHC9	100	90.775	ENSLAFG00000012763	ZCCHC9	100	90.775	Loxodonta_africana
ENSG00000131732	ZCCHC9	100	97.786	ENSMFAG00000001943	ZCCHC9	100	97.786	Macaca_fascicularis
ENSG00000131732	ZCCHC9	100	97.417	ENSMMUG00000020655	ZCCHC9	100	97.417	Macaca_mulatta
ENSG00000131732	ZCCHC9	100	97.786	ENSMNEG00000040582	-	100	97.786	Macaca_nemestrina
ENSG00000131732	ZCCHC9	100	97.786	ENSMLEG00000038748	-	100	97.786	Mandrillus_leucophaeus
ENSG00000131732	ZCCHC9	100	53.986	ENSMAMG00000011669	zcchc9	100	54.710	Mastacembelus_armatus
ENSG00000131732	ZCCHC9	100	54.317	ENSMZEG00005011747	zcchc9	94	54.317	Maylandia_zebra
ENSG00000131732	ZCCHC9	89	58.921	ENSMGAG00000006841	ZCCHC9	100	58.506	Meleagris_gallopavo
ENSG00000131732	ZCCHC9	100	79.336	ENSMAUG00000022026	Zcchc9	100	79.336	Mesocricetus_auratus
ENSG00000131732	ZCCHC9	100	92.251	ENSMICG00000029554	-	100	92.251	Microcebus_murinus
ENSG00000131732	ZCCHC9	100	78.967	ENSMICG00000016266	-	100	78.967	Microcebus_murinus
ENSG00000131732	ZCCHC9	100	82.657	ENSMOCG00000012433	Zcchc9	100	82.657	Microtus_ochrogaster
ENSG00000131732	ZCCHC9	100	54.286	ENSMMOG00000010601	zcchc9	100	54.286	Mola_mola
ENSG00000131732	ZCCHC9	100	76.015	ENSMODG00000020261	-	100	75.277	Monodelphis_domestica
ENSG00000131732	ZCCHC9	100	51.601	ENSMALG00000004220	zcchc9	100	51.812	Monopterus_albus
ENSG00000131732	ZCCHC9	100	84.502	MGP_CAROLIEiJ_G0018764	Zcchc9	100	84.502	Mus_caroli
ENSG00000131732	ZCCHC9	100	83.395	ENSMUSG00000021621	Zcchc9	100	83.395	Mus_musculus
ENSG00000131732	ZCCHC9	100	84.133	MGP_PahariEiJ_G0015843	Zcchc9	100	84.133	Mus_pahari
ENSG00000131732	ZCCHC9	100	81.550	MGP_SPRETEiJ_G0019648	Zcchc9	100	81.181	Mus_spretus
ENSG00000131732	ZCCHC9	86	93.534	ENSMPUG00000008276	ZCCHC9	90	93.534	Mustela_putorius_furo
ENSG00000131732	ZCCHC9	100	91.144	ENSMLUG00000001886	ZCCHC9	100	91.144	Myotis_lucifugus
ENSG00000131732	ZCCHC9	100	88.561	ENSNGAG00000017736	Zcchc9	100	88.930	Nannospalax_galili
ENSG00000131732	ZCCHC9	54	65.068	ENSNBRG00000005258	zcchc9	92	65.217	Neolamprologus_brichardi
ENSG00000131732	ZCCHC9	100	98.524	ENSNLEG00000029214	ZCCHC9	100	98.524	Nomascus_leucogenys
ENSG00000131732	ZCCHC9	100	71.429	ENSMEUG00000011005	ZCCHC9	100	71.429	Notamacropus_eugenii
ENSG00000131732	ZCCHC9	100	77.122	ENSOPRG00000004474	ZCCHC9	100	76.384	Ochotona_princeps
ENSG00000131732	ZCCHC9	100	54.480	ENSONIG00000011366	zcchc9	90	54.480	Oreochromis_niloticus
ENSG00000131732	ZCCHC9	100	76.384	ENSOANG00000014769	ZCCHC9	100	76.384	Ornithorhynchus_anatinus
ENSG00000131732	ZCCHC9	100	81.919	ENSOCUG00000011215	ZCCHC9	100	81.919	Oryctolagus_cuniculus
ENSG00000131732	ZCCHC9	100	51.471	ENSORLG00000020135	zcchc9	100	52.206	Oryzias_latipes
ENSG00000131732	ZCCHC9	100	51.838	ENSORLG00020018090	zcchc9	100	52.574	Oryzias_latipes_hni
ENSG00000131732	ZCCHC9	100	53.309	ENSORLG00015005137	zcchc9	100	53.309	Oryzias_latipes_hsok
ENSG00000131732	ZCCHC9	100	53.506	ENSOMEG00000004423	zcchc9	100	53.875	Oryzias_melastigma
ENSG00000131732	ZCCHC9	100	78.229	ENSOGAG00000026127	-	100	78.229	Otolemur_garnettii
ENSG00000131732	ZCCHC9	100	81.250	ENSOGAG00000026324	-	100	81.250	Otolemur_garnettii
ENSG00000131732	ZCCHC9	100	91.144	ENSOGAG00000002543	-	100	91.144	Otolemur_garnettii
ENSG00000131732	ZCCHC9	99	92.884	ENSOARG00000015219	ZCCHC9	98	92.884	Ovis_aries
ENSG00000131732	ZCCHC9	100	98.524	ENSPPAG00000041281	ZCCHC9	100	98.524	Pan_paniscus
ENSG00000131732	ZCCHC9	100	92.620	ENSPPRG00000023474	ZCCHC9	100	92.620	Panthera_pardus
ENSG00000131732	ZCCHC9	100	91.882	ENSPTIG00000017303	ZCCHC9	100	91.882	Panthera_tigris_altaica
ENSG00000131732	ZCCHC9	100	99.262	ENSPTRG00000017047	ZCCHC9	100	99.262	Pan_troglodytes
ENSG00000131732	ZCCHC9	100	97.786	ENSPANG00000013570	-	100	97.786	Papio_anubis
ENSG00000131732	ZCCHC9	100	56.777	ENSPKIG00000006659	zcchc9	100	55.636	Paramormyrops_kingsleyae
ENSG00000131732	ZCCHC9	100	74.170	ENSPSIG00000015854	ZCCHC9	100	74.539	Pelodiscus_sinensis
ENSG00000131732	ZCCHC9	100	52.381	ENSPMGG00000000044	zcchc9	100	52.669	Periophthalmus_magnuspinnatus
ENSG00000131732	ZCCHC9	100	86.716	ENSPEMG00000016614	Zcchc9	100	86.716	Peromyscus_maniculatus_bairdii
ENSG00000131732	ZCCHC9	100	74.539	ENSPCIG00000013208	ZCCHC9	95	73.801	Phascolarctos_cinereus
ENSG00000131732	ZCCHC9	100	53.546	ENSPFOG00000004364	zcchc9	100	53.546	Poecilia_formosa
ENSG00000131732	ZCCHC9	100	53.546	ENSPMEG00000007672	zcchc9	100	53.546	Poecilia_mexicana
ENSG00000131732	ZCCHC9	100	53.546	ENSPREG00000013644	zcchc9	100	53.546	Poecilia_reticulata
ENSG00000131732	ZCCHC9	100	99.262	ENSPPYG00000015604	ZCCHC9	100	99.262	Pongo_abelii
ENSG00000131732	ZCCHC9	53	95.105	ENSPCOG00000018504	ZCCHC9	100	95.105	Propithecus_coquereli
ENSG00000131732	ZCCHC9	100	54.513	ENSPNYG00000011001	zcchc9	100	54.513	Pundamilia_nyererei
ENSG00000131732	ZCCHC9	98	47.273	ENSPNAG00000008675	zcchc9	88	46.763	Pygocentrus_nattereri
ENSG00000131732	ZCCHC9	100	84.133	ENSRNOG00000051682	Zcchc9	100	84.133	Rattus_norvegicus
ENSG00000131732	ZCCHC9	100	86.716	ENSRBIG00000036904	-	99	86.716	Rhinopithecus_bieti
ENSG00000131732	ZCCHC9	100	97.048	ENSRBIG00000040955	-	100	97.048	Rhinopithecus_bieti
ENSG00000131732	ZCCHC9	100	97.436	ENSRROG00000029012	-	100	97.436	Rhinopithecus_roxellana
ENSG00000131732	ZCCHC9	86	90.558	ENSRROG00000045436	-	100	90.558	Rhinopithecus_roxellana
ENSG00000131732	ZCCHC9	100	98.524	ENSRROG00000042005	-	100	98.524	Rhinopithecus_roxellana
ENSG00000131732	ZCCHC9	100	96.691	ENSSBOG00000034293	-	100	96.691	Saimiri_boliviensis_boliviensis
ENSG00000131732	ZCCHC9	100	72.628	ENSSHAG00000014504	ZCCHC9	100	71.898	Sarcophilus_harrisii
ENSG00000131732	ZCCHC9	100	50.538	ENSSFOG00015011594	zcchc9	100	50.538	Scleropages_formosus
ENSG00000131732	ZCCHC9	100	54.545	ENSSMAG00000009572	zcchc9	100	54.545	Scophthalmus_maximus
ENSG00000131732	ZCCHC9	100	55.678	ENSSDUG00000006368	zcchc9	100	56.044	Seriola_dumerili
ENSG00000131732	ZCCHC9	87	56.118	ENSSLDG00000022676	zcchc9	93	57.741	Seriola_lalandi_dorsalis
ENSG00000131732	ZCCHC9	100	88.930	ENSSARG00000008580	ZCCHC9	100	88.930	Sorex_araneus
ENSG00000131732	ZCCHC9	99	58.909	ENSSPUG00000004588	ZCCHC9	99	61.091	Sphenodon_punctatus
ENSG00000131732	ZCCHC9	100	53.285	ENSSPAG00000022883	zcchc9	100	53.650	Stegastes_partitus
ENSG00000131732	ZCCHC9	100	88.930	ENSSSCG00000014129	ZCCHC9	100	88.930	Sus_scrofa
ENSG00000131732	ZCCHC9	54	73.826	ENSTGUG00000006994	ZCCHC9	100	71.098	Taeniopygia_guttata
ENSG00000131732	ZCCHC9	100	53.261	ENSTRUG00000018600	zcchc9	100	53.261	Takifugu_rubripes
ENSG00000131732	ZCCHC9	100	54.480	ENSTNIG00000013571	zcchc9	100	54.480	Tetraodon_nigroviridis
ENSG00000131732	ZCCHC9	100	92.620	ENSTTRG00000013796	ZCCHC9	100	92.620	Tursiops_truncatus
ENSG00000131732	ZCCHC9	100	92.251	ENSUAMG00000021778	ZCCHC9	100	92.251	Ursus_americanus
ENSG00000131732	ZCCHC9	100	92.251	ENSUMAG00000003264	ZCCHC9	100	92.251	Ursus_maritimus
ENSG00000131732	ZCCHC9	100	90.775	ENSVPAG00000009423	ZCCHC9	100	90.775	Vicugna_pacos
ENSG00000131732	ZCCHC9	100	92.989	ENSVVUG00000023331	ZCCHC9	100	92.989	Vulpes_vulpes
ENSG00000131732	ZCCHC9	100	53.623	ENSXETG00000027804	zcchc9	100	53.623	Xenopus_tropicalis
ENSG00000131732	ZCCHC9	100	53.875	ENSXMAG00000024144	zcchc9	100	53.875	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0005730	nucleolus	-	IEA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010923	negative regulation of phosphatase activity	19389623.	IDA	Process