EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000131773 (Gene tree)
Gene ID
10656
Gene Symbol
KHDRBS3
Alias
T-STAR|Etle|etoile|SALP|SLM2|SLM-2
Full Name
KH RNA binding domain containing, signal transduction associated 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
199,266 bases
Position
chr8:135,457,457-135,656,722
Accession
18117
RBP type
canonical RBP
Summary
(KH RNA Binding Domain Containing, Signal Transduction Associated 3) is a Protein Coding gene. Diseases associated with KHDRBS3 include Transvestism and Fetishism. Among its related pathways are Signaling by GPCR and Signaling by PTK6. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and RNA binding. An important paralog of this gene is KHDRBS2.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000430284KH_1PF00013.291.4e-0611
ENSP00000431022KH_1PF00013.293.5e-0611
ENSP00000348108KH_1PF00013.295.6e-0611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
31296839KHDRBS3 regulates the permeability of blood-tumor barrier via cDENND4C/miR-577 axis.Cell Death Dis2019 Jul 11Wu Pdoi: 10.1038/s41419-019-1771-2.
23637638The tissue-specific RNA binding protein T-STAR controls regional splicing patterns of neurexin pre-mRNAs in the brain.PLoS Genet2013 AprEhrmann Idoi: 10.1371/journal.pgen.1003474
19457263The STAR RNA binding proteins GLD-1, QKI, SAM68 and SLM-2 bind bipartite RNA motifs.BMC Mol Biol2009 May 20Galarneau Adoi: 10.1186/1471-2199-10-47.
10077576Characterization of Sam68-like mammalian proteins SLM-1 and SLM-2: SLM-1 is a Src substrate during mitosis.Proc Natl Acad Sci U S A1999 Mar 16Di Fruscio M-
10332027T-STAR/ETOILE: a novel relative of SAM68 that interacts with an RNA-binding protein implicated in spermatogenesis.Hum Mol Genet1999 JunVenables JP-
12529443Sam68 RNA binding protein is an in vivo substrate for protein arginine N-methyltransferase 1.Mol Biol Cell2003 JanCote J-
15896330Molecular markers distinguish bone marrow mesenchymal stem cells from fibroblasts.Biochem Biophys Res Commun2005 Jun 24Ishii M-
15471878The nuclear tyrosine kinase BRK/Sik phosphorylates and inhibits the RNA-binding activities of the Sam68-like mammalian proteins SLM-1 and SLM-2.J Biol Chem2004 Dec 24Haegebarth A-
15163637SIAH1 targets the alternative splicing factor T-STAR for degradation by the proteasome.Hum Mol Genet2004 Jul 15Venables JP-
17764653Arginine methylation of Sam68 and SLM proteins negatively regulates their poly(U) RNA binding activity.Arch Biochem Biophys2007 Oct 1Rho J-
27960072An alternative splicing switch shapes neurexin repertoires in principal neurons versus interneurons in the mouse hippocampus.Elife2016 Dec 13Nguyen TMdoi: 10.7554/eLife.22757.
27174676Control of neuronal synapse specification by a highly dedicated alternative splicing program.Science2016 May 20Traunmuller Ldoi: 10.1126/science.aaf2397
28871947[Knock-down of KHDRBS3 gene inhibits proliferation of human ovarian cancer CAOV-3 cells].Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi2017 AugMa X-
20617199RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.PLoS Comput Biol2010 Jul 1Kazan Hdoi: 10.1371/journal.pcbi.1000832.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000517394KHDRBS3-202679-ENSP00000430284160 (aa)-E5RG12
ENST00000520981KHDRBS3-2061243-ENSP00000428607119 (aa)-E5RHD3
ENST00000522578KHDRBS3-210734--- (aa)--
ENST00000524199KHDRBS3-211889XM_024447052ENSP00000431022265 (aa)XP_024302820E5RJZ9
ENST00000522079KHDRBS3-208712--- (aa)--
ENST00000521461KHDRBS3-207793-ENSP0000042864359 (aa)-H0YB45
ENST00000355849KHDRBS3-2011977XM_005250757ENSP00000348108346 (aa)XP_005250814O75525
ENST00000518728KHDRBS3-204197--- (aa)--
ENST00000517859KHDRBS3-2031066-ENSP00000427851196 (aa)-H0YAQ3
ENST00000519600KHDRBS3-2055466--- (aa)--
ENST00000524282KHDRBS3-212585-ENSP00000427841195 (aa)-H0YAQ1
ENST00000522433KHDRBS3-209396--- (aa)--
Gene Model
Click here to download ENSG00000131773's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000131773rs70172978135590885?Aspartate aminotransferase levels in low alcohol consumption30589442[0.045-0.109] unit increase0.0771EFO_0004736|EFO_0007878
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000131773's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000131773KHDRBS39568.831ENSG00000121774KHDRBS17857.821
ENSG00000131773KHDRBS38146.212ENSG00000112531QKI7655.128
ENSG00000131773KHDRBS39479.221ENSG00000112232KHDRBS29965.730
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000131773KHDRBS399100.000ENSAMEG00000016744KHDRBS310095.077Ailuropoda_melanoleuca
ENSG00000131773KHDRBS39991.824ENSACIG00000002529KHDRBS310074.368Amphilophus_citrinellus
ENSG00000131773KHDRBS39991.824ENSAOCG00000006836KHDRBS39977.326Amphiprion_ocellaris
ENSG00000131773KHDRBS39991.824ENSAPEG00000005415KHDRBS39977.326Amphiprion_percula
ENSG00000131773KHDRBS39991.195ENSATEG00000010658KHDRBS39976.744Anabas_testudineus
ENSG00000131773KHDRBS39998.101ENSAPLG00000014746KHDRBS39989.937Anas_platyrhynchos
ENSG00000131773KHDRBS39886.082ENSACAG00000012042KHDRBS310085.034Anolis_carolinensis
ENSG00000131773KHDRBS39999.371ENSANAG00000019406KHDRBS310092.219Aotus_nancymaae
ENSG00000131773KHDRBS39991.772ENSACLG00000010826KHDRBS39976.744Astatotilapia_calliptera
ENSG00000131773KHDRBS310099.375ENSBTAG00000002181KHDRBS310097.688Bos_taurus
ENSG00000131773KHDRBS310099.711ENSCJAG00000004331KHDRBS310099.711Callithrix_jacchus
ENSG00000131773KHDRBS39999.371ENSCAFG00000001166KHDRBS310097.110Canis_familiaris
ENSG00000131773KHDRBS310099.375ENSCAFG00020013570KHDRBS39996.845Canis_lupus_dingo
ENSG00000131773KHDRBS39999.371ENSCHIG00000016533KHDRBS310097.688Capra_hircus
ENSG00000131773KHDRBS398100.000ENSTSYG00000004106KHDRBS310098.418Carlito_syrichta
ENSG00000131773KHDRBS398100.000ENSCPOG00000000342KHDRBS310094.571Cavia_porcellus
ENSG00000131773KHDRBS3100100.000ENSCCAG00000031191KHDRBS3100100.000Cebus_capucinus
ENSG00000131773KHDRBS310099.422ENSCATG00000034823KHDRBS310099.422Cercocebus_atys
ENSG00000131773KHDRBS39999.371ENSCLAG00000002164KHDRBS310097.368Chinchilla_lanigera
ENSG00000131773KHDRBS399100.000ENSCSAG00000009815KHDRBS310097.538Chlorocebus_sabaeus
ENSG00000131773KHDRBS39998.113ENSCPBG00000019654KHDRBS310090.202Chrysemys_picta_bellii
ENSG00000131773KHDRBS39999.621ENSCANG00000031881KHDRBS310099.706Colobus_angolensis_palliatus
ENSG00000131773KHDRBS398100.000ENSCGRG00001000113Khdrbs310097.468Cricetulus_griseus_chok1gshd
ENSG00000131773KHDRBS39991.195ENSCSEG00000013385KHDRBS39974.709Cynoglossus_semilaevis
ENSG00000131773KHDRBS39991.195ENSCVAG00000007211KHDRBS39976.453Cyprinodon_variegatus
ENSG00000131773KHDRBS39874.093ENSDARG00000101020KHDRBS39870.408Danio_rerio
ENSG00000131773KHDRBS39894.828ENSDNOG00000010878KHDRBS310093.174Dasypus_novemcinctus
ENSG00000131773KHDRBS39999.367ENSDORG00000014595-9493.538Dipodomys_ordii
ENSG00000131773KHDRBS39789.744ENSETEG00000004701KHDRBS310078.864Echinops_telfairi
ENSG00000131773KHDRBS310098.750ENSEASG00005022023KHDRBS39997.484Equus_asinus_asinus
ENSG00000131773KHDRBS310098.750ENSECAG00000010194KHDRBS310097.977Equus_caballus
ENSG00000131773KHDRBS397100.000ENSEEUG00000007062KHDRBS310079.114Erinaceus_europaeus
ENSG00000131773KHDRBS39988.889ENSELUG00000011955KHDRBS39975.931Esox_lucius
ENSG00000131773KHDRBS39999.371ENSFCAG00000000229KHDRBS310098.266Felis_catus
ENSG00000131773KHDRBS39996.855ENSFALG00000002752KHDRBS310089.049Ficedula_albicollis
ENSG00000131773KHDRBS310099.375ENSFDAG00000020910KHDRBS39397.792Fukomys_damarensis
ENSG00000131773KHDRBS39991.195ENSFHEG00000017679KHDRBS39975.872Fundulus_heteroclitus
ENSG00000131773KHDRBS39992.405ENSGMOG00000009156KHDRBS310072.956Gadus_morhua
ENSG00000131773KHDRBS39996.855ENSGALG00000031519KHDRBS310089.914Gallus_gallus
ENSG00000131773KHDRBS39991.195ENSGAFG00000018918KHDRBS39976.744Gambusia_affinis
ENSG00000131773KHDRBS38993.007ENSGACG00000008847KHDRBS310074.062Gasterosteus_aculeatus
ENSG00000131773KHDRBS39998.113ENSGAGG00000022819KHDRBS310089.337Gopherus_agassizii
ENSG00000131773KHDRBS3100100.000ENSGGOG00000000940KHDRBS3100100.000Gorilla_gorilla
ENSG00000131773KHDRBS39991.195ENSHBUG00000009781KHDRBS39976.453Haplochromis_burtoni
ENSG00000131773KHDRBS399100.000ENSHGLG00000006718KHDRBS310097.110Heterocephalus_glaber_female
ENSG00000131773KHDRBS39987.342ENSHGLG00000008364-10079.480Heterocephalus_glaber_female
ENSG00000131773KHDRBS398100.000ENSHGLG00100004576-10097.785Heterocephalus_glaber_male
ENSG00000131773KHDRBS39987.342ENSHGLG00100010562-9680.952Heterocephalus_glaber_male
ENSG00000131773KHDRBS310090.625ENSHCOG00000009110KHDRBS39973.414Hippocampus_comes
ENSG00000131773KHDRBS39990.566ENSIPUG00000004984khdrbs39977.035Ictalurus_punctatus
ENSG00000131773KHDRBS39998.742ENSSTOG00000008710KHDRBS310097.399Ictidomys_tridecemlineatus
ENSG00000131773KHDRBS39998.113ENSJJAG00000011049Khdrbs310094.798Jaculus_jaculus
ENSG00000131773KHDRBS39991.824ENSKMAG00000000152-8077.528Kryptolebias_marmoratus
ENSG00000131773KHDRBS39988.957ENSLBEG00000003951KHDRBS38676.149Labrus_bergylta
ENSG00000131773KHDRBS310091.875ENSLOCG00000003734KHDRBS39980.612Lepisosteus_oculatus
ENSG00000131773KHDRBS39998.734ENSLAFG00000004849KHDRBS39893.846Loxodonta_africana
ENSG00000131773KHDRBS398100.000ENSMFAG00000041845KHDRBS310099.659Macaca_fascicularis
ENSG00000131773KHDRBS3100100.000ENSMMUG00000022248KHDRBS39999.371Macaca_mulatta
ENSG00000131773KHDRBS310099.711ENSMNEG00000038285KHDRBS310099.711Macaca_nemestrina
ENSG00000131773KHDRBS39999.620ENSMLEG00000032520KHDRBS310099.684Mandrillus_leucophaeus
ENSG00000131773KHDRBS39991.824ENSMAMG00000003695KHDRBS39976.453Mastacembelus_armatus
ENSG00000131773KHDRBS39991.195ENSMZEG00005001896KHDRBS39976.453Maylandia_zebra
ENSG00000131773KHDRBS39996.855ENSMGAG00000012888KHDRBS310088.372Meleagris_gallopavo
ENSG00000131773KHDRBS399100.000ENSMAUG00000008539Khdrbs310081.844Mesocricetus_auratus
ENSG00000131773KHDRBS310098.555ENSMICG00000027467KHDRBS310098.555Microcebus_murinus
ENSG00000131773KHDRBS399100.000ENSMOCG00000020954Khdrbs310097.110Microtus_ochrogaster
ENSG00000131773KHDRBS39991.195ENSMMOG00000021238KHDRBS36978.652Mola_mola
ENSG00000131773KHDRBS39997.484ENSMODG00000000975KHDRBS39993.642Monodelphis_domestica
ENSG00000131773KHDRBS39992.405ENSMALG00000016210KHDRBS39977.326Monopterus_albus
ENSG00000131773KHDRBS39999.367MGP_CAROLIEiJ_G0019855Khdrbs310097.110Mus_caroli
ENSG00000131773KHDRBS39999.367ENSMUSG00000022332Khdrbs3100100.000Mus_musculus
ENSG00000131773KHDRBS39999.367MGP_PahariEiJ_G0019860Khdrbs310097.110Mus_pahari
ENSG00000131773KHDRBS39999.367MGP_SPRETEiJ_G0020753Khdrbs310096.532Mus_spretus
ENSG00000131773KHDRBS399100.000ENSMPUG00000001869KHDRBS310095.385Mustela_putorius_furo
ENSG00000131773KHDRBS398100.000ENSMLUG00000004054KHDRBS310085.801Myotis_lucifugus
ENSG00000131773KHDRBS39991.195ENSNBRG00000000697KHDRBS310076.301Neolamprologus_brichardi
ENSG00000131773KHDRBS310099.133ENSNLEG00000010766KHDRBS310099.133Nomascus_leucogenys
ENSG00000131773KHDRBS39998.742ENSOPRG00000000404KHDRBS310096.519Ochotona_princeps
ENSG00000131773KHDRBS39998.742ENSODEG00000000682KHDRBS310097.688Octodon_degus
ENSG00000131773KHDRBS39991.772ENSONIG00000007652KHDRBS310076.025Oreochromis_niloticus
ENSG00000131773KHDRBS39995.570ENSOANG00000014074KHDRBS310085.119Ornithorhynchus_anatinus
ENSG00000131773KHDRBS39999.367ENSOCUG00000000743KHDRBS310095.732Oryctolagus_cuniculus
ENSG00000131773KHDRBS39991.772ENSORLG00000013441KHDRBS39974.419Oryzias_latipes
ENSG00000131773KHDRBS39991.772ENSORLG00020021838KHDRBS39974.419Oryzias_latipes_hni
ENSG00000131773KHDRBS39991.139ENSORLG00015010093KHDRBS39971.512Oryzias_latipes_hsok
ENSG00000131773KHDRBS39999.371ENSOGAG00000005150KHDRBS310097.977Otolemur_garnettii
ENSG00000131773KHDRBS310099.375ENSOARG00000005036KHDRBS310091.860Ovis_aries
ENSG00000131773KHDRBS310099.711ENSPPAG00000043998KHDRBS310099.711Pan_paniscus
ENSG00000131773KHDRBS39999.371ENSPPRG00000001453KHDRBS310098.266Panthera_pardus
ENSG00000131773KHDRBS398100.000ENSPTIG00000005373KHDRBS39198.101Panthera_tigris_altaica
ENSG00000131773KHDRBS399100.000ENSPTRG00000020608KHDRBS310089.884Pan_troglodytes
ENSG00000131773KHDRBS310099.711ENSPANG00000006134KHDRBS310099.711Papio_anubis
ENSG00000131773KHDRBS39990.566ENSPKIG00000002433KHDRBS39977.616Paramormyrops_kingsleyae
ENSG00000131773KHDRBS39998.742ENSPSIG00000004366KHDRBS310089.080Pelodiscus_sinensis
ENSG00000131773KHDRBS39990.062ENSPMGG00000018866KHDRBS39974.063Periophthalmus_magnuspinnatus
ENSG00000131773KHDRBS39991.195ENSPREG00000015667KHDRBS39977.326Poecilia_reticulata
ENSG00000131773KHDRBS399100.000ENSPPYG00000018899KHDRBS310098.220Pongo_abelii
ENSG00000131773KHDRBS39898.726ENSPVAG00000017021KHDRBS310094.937Pteropus_vampyrus
ENSG00000131773KHDRBS39987.805ENSPNYG00000007200KHDRBS39966.474Pundamilia_nyererei
ENSG00000131773KHDRBS39990.566ENSPNAG00000013500KHDRBS39978.779Pygocentrus_nattereri
ENSG00000131773KHDRBS39999.367ENSRNOG00000009539Khdrbs310095.665Rattus_norvegicus
ENSG00000131773KHDRBS3100100.000ENSRBIG00000036854KHDRBS3100100.000Rhinopithecus_bieti
ENSG00000131773KHDRBS3100100.000ENSRROG00000044792KHDRBS3100100.000Rhinopithecus_roxellana
ENSG00000131773KHDRBS399100.000ENSSBOG00000020642KHDRBS3100100.000Saimiri_boliviensis_boliviensis
ENSG00000131773KHDRBS37599.167ENSSHAG00000000632-10099.174Sarcophilus_harrisii
ENSG00000131773KHDRBS39991.195ENSSFOG00015013177khdrbs39977.035Scleropages_formosus
ENSG00000131773KHDRBS39991.824ENSSMAG00000020535KHDRBS39976.744Scophthalmus_maximus
ENSG00000131773KHDRBS39991.824ENSSDUG00000000996KHDRBS39976.744Seriola_dumerili
ENSG00000131773KHDRBS39970.000ENSSLDG00000006072KHDRBS38962.857Seriola_lalandi_dorsalis
ENSG00000131773KHDRBS39873.575ENSSARG00000011751KHDRBS310077.733Sorex_araneus
ENSG00000131773KHDRBS39997.484ENSSPUG00000005628KHDRBS310089.625Sphenodon_punctatus
ENSG00000131773KHDRBS39991.824ENSSPAG00000018331KHDRBS39977.326Stegastes_partitus
ENSG00000131773KHDRBS310098.750ENSSSCG00000005941KHDRBS39396.657Sus_scrofa
ENSG00000131773KHDRBS39996.855ENSTGUG00000012611KHDRBS310089.337Taeniopygia_guttata
ENSG00000131773KHDRBS39991.824ENSTRUG00000013451KHDRBS39969.186Takifugu_rubripes
ENSG00000131773KHDRBS39992.405ENSTNIG00000014021KHDRBS39973.252Tetraodon_nigroviridis
ENSG00000131773KHDRBS39999.371ENSTBEG00000004773KHDRBS310096.821Tupaia_belangeri
ENSG00000131773KHDRBS39998.742ENSTTRG00000001270KHDRBS310097.110Tursiops_truncatus
ENSG00000131773KHDRBS399100.000ENSUMAG00000002010KHDRBS310097.611Ursus_maritimus
ENSG00000131773KHDRBS310099.375ENSVVUG00000019368KHDRBS39996.845Vulpes_vulpes
ENSG00000131773KHDRBS39990.506ENSXETG00000009227khdrbs310077.950Xenopus_tropicalis
ENSG00000131773KHDRBS39891.083ENSXCOG00000010479KHDRBS38175.502Xiphophorus_couchianus
ENSG00000131773KHDRBS39990.566ENSXMAG00000005362KHDRBS39976.453Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22681889.HDAFunction
GO:0003723RNA binding19561594.IDAFunction
GO:0005515protein binding10332027.10749975.16189514.20195357.25416956.25910212.26871637.IPIFunction
GO:0005634nucleus10332027.IMPComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0006397mRNA processing-IEAProcess
GO:0017124SH3 domain binding-IEAFunction
GO:0019904protein domain specific binding10332027.10749975.IPIFunction
GO:0042802identical protein binding10332027.10749975.IDAFunction
GO:0048024regulation of mRNA splicing, via spliceosome-IEAProcess
GO:0051259protein complex oligomerization10332027.10749975.IDAProcess

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