Transcript ID | Name | Length | RefSeq ID | Protein ID | Length | RefSeq ID | UniportKB ID |
---|---|---|---|---|---|---|---|
ENST00000558036 | SNRPA1-205 | 2108 | - | - | - (aa) | - | - |
ENST00000561187 | SNRPA1-215 | 509 | - | - | - (aa) | - | - |
ENST00000560987 | SNRPA1-214 | 478 | - | - | - (aa) | - | - |
ENST00000560307 | SNRPA1-209 | 433 | - | - | - (aa) | - | - |
ENST00000626000 | SNRPA1-216 | 539 | - | ENSP00000486896 | 154 (aa) | - | H0YKK0 |
ENST00000560856 | SNRPA1-213 | 588 | - | - | - (aa) | - | - |
ENST00000540017 | SNRPA1-203 | 506 | NR_135507 | - | - (aa) | - | - |
ENST00000560496 | SNRPA1-212 | 824 | - | ENSP00000453309 | 89 (aa) | - | H0YLR3 |
ENST00000254193 | SNRPA1-201 | 1055 | - | ENSP00000254193 | 255 (aa) | - | P09661 |
ENST00000559309 | SNRPA1-207 | 924 | - | ENSP00000452836 | 154 (aa) | - | H0YKK0 |
ENST00000394082 | SNRPA1-202 | 556 | NR_135506 | - | - (aa) | - | - |
ENST00000560433 | SNRPA1-211 | 2440 | - | - | - (aa) | - | - |
ENST00000560383 | SNRPA1-210 | 565 | - | - | - (aa) | - | - |
ENST00000558059 | SNRPA1-206 | 678 | - | - | - (aa) | - | - |
ENST00000558020 | SNRPA1-204 | 466 | - | - | - (aa) | - | - |
ENST00000559686 | SNRPA1-208 | 625 | - | ENSP00000453521 | 142 (aa) | - | H0YMA0 |
Pathway ID | Pathway Name | Source |
---|---|---|
hsa03040 | Spliceosome | KEGG |
ensgID | SNP | Chromosome | Position | SNP-risk | Trait | PubmedID | 95% CI | Or or BEAT | EFO ID |
---|---|---|---|---|---|---|---|---|---|
ENSG00000131876 | rs56377826 | 15 | 101287286 | T | Lung cancer | 28604730 | [1.04-1.11] | 1.0730215 | EFO_0001071 |
Ensembl ID | Gene Symbol | Coverage | Identiy | Ortholog | Gene Symbol | Coverage | Identiy | Species |
---|---|---|---|---|---|---|---|---|
ENSG00000131876 | SNRPA1 | 99 | 54.605 | WBGene00003390 | mog-2 | 92 | 49.356 | Caenorhabditis_elegans |
ENSG00000131876 | SNRPA1 | 100 | 100.000 | ENSMUSG00000030512 | Snrpa1 | 100 | 100.000 | Mus_musculus |
Go ID | Go_term | PubmedID | Evidence | Category |
---|---|---|---|---|
GO:0000398 | mRNA splicing, via spliceosome | 21873635. | IBA | Process |
GO:0000398 | mRNA splicing, via spliceosome | 9731529.11991638. | IC | Process |
GO:0000398 | mRNA splicing, via spliceosome | 28076346.28781166. | IDA | Process |
GO:0000398 | mRNA splicing, via spliceosome | - | TAS | Process |
GO:0003723 | RNA binding | 22681889. | HDA | Function |
GO:0005515 | protein binding | 9716128.22365833.25416956. | IPI | Function |
GO:0005634 | nucleus | 28076346.28781166. | IDA | Component |
GO:0005654 | nucleoplasm | - | IDA | Component |
GO:0005654 | nucleoplasm | - | TAS | Component |
GO:0005681 | spliceosomal complex | 9731529. | IDA | Component |
GO:0005686 | U2 snRNP | 21873635. | IBA | Component |
GO:0007283 | spermatogenesis | 27035939. | IGI | Process |
GO:0008380 | RNA splicing | 2928112. | TAS | Process |
GO:0016604 | nuclear body | - | IDA | Component |
GO:0016607 | nuclear speck | - | IDA | Component |
GO:0030532 | small nuclear ribonucleoprotein complex | 2928112. | TAS | Component |
GO:0030620 | U2 snRNA binding | 21873635. | IBA | Function |
GO:0035722 | interleukin-12-mediated signaling pathway | - | TAS | Process |
GO:0071005 | U2-type precatalytic spliceosome | 28781166. | IDA | Component |
GO:0071007 | U2-type catalytic step 2 spliceosome | 28076346. | IDA | Component |
GO:0071013 | catalytic step 2 spliceosome | 11991638. | IDA | Component |
Cancer | Chr | Position | Mutation Type | dbSNP | Protein-change | Allele Freq | RBD |
---|---|---|---|---|---|---|---|
BLCA | |||||||
BLCA | |||||||
BLCA | |||||||
BLCA | |||||||
BRCA | |||||||
CESC | |||||||
CESC | |||||||
CESC | |||||||
CESC | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
HNSC | |||||||
HNSC | |||||||
KIRC | |||||||
KIRP | |||||||
KIRP | |||||||
LAML | |||||||
LIHC | |||||||
LUAD | |||||||
LUAD | |||||||
LUSC | |||||||
LUSC | |||||||
MESO | |||||||
PAAD | |||||||
PRAD | |||||||
PRAD | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCS |
Cancer | Type | Freq | Q-value |
---|---|---|---|
CESC | |||
ESCA | |||
HNSC | |||
LGG | |||
LIHC | |||
LIHC | |||
LUSC | |||
OV | |||
PAAD | |||
SARC | |||
SKCM | |||
UCEC |
Cancer | P-value | Q-value |
---|---|---|
THYM | ||
SARC | ||
MESO | ||
ACC | ||
SKCM | ||
PRAD | ||
KIRP | ||
BLCA | ||
KICH | ||
LIHC | ||
LUAD | ||
OV |