EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000132153 (Gene tree)
Gene ID
22907
Gene Symbol
DHX30
Alias
KIAA0890|FLJ11214|DDX30
Full Name
DExH-box helicase 30
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
47,288 bases
Position
chr3:47,802,909-47,850,196
Accession
16716
RBP type
canonical RBP
Summary
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The family member encoded by this gene is a mitochondrial nucleoid protein that associates with mitochondrial DNA. It has also been identified as a component of a transcriptional repressor complex that functions in retinal development, and it is required to optimize the function of the zinc-finger antiviral protein. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Feb 2013]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000483160DEADPF00270.297.8e-0611
ENSP00000343442DEADPF00270.297.9e-0611
ENSP00000392601DEADPF00270.298.2e-0611
ENSP00000405620DEADPF00270.298.2e-0611
ENSP00000394682DEADPF00270.298.6e-0611
ENSP00000483160HA2PF04408.232.6e-1211
ENSP00000343442HA2PF04408.232.7e-1211
ENSP00000392601HA2PF04408.232.8e-1211
ENSP00000405620HA2PF04408.232.8e-1211
ENSP00000394682HA2PF04408.232.9e-1211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
25683715Mitochondrial RNA Granules Are Centers for Posttranscriptional RNA Processing and Ribosome Biogenesis.Cell Rep2015 Feb 17Antonicka Hdoi: 10.1016/j.celrep.2015.01.030
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000476446DHX30-213752--- (aa)--
ENST00000619982DHX30-2153574XM_017005917ENSP000004831601155 (aa)XP_016861406Q7L2E3
ENST00000472718DHX30-2111464NR_075079-- (aa)--
ENST00000470959DHX30-209565--- (aa)--
ENST00000474183DHX30-212963--- (aa)--
ENST00000461905DHX30-208591--- (aa)--
ENST00000471082DHX30-210464--- (aa)--
ENST00000446256DHX30-2063660-ENSP000003926011194 (aa)-Q7L2E3
ENST00000395745DHX30-2023887-ENSP0000037909442 (aa)-F6R0H4
ENST00000457607DHX30-2073748XM_011533490ENSP000003946821222 (aa)XP_011531792Q7L2E3
ENST00000441384DHX30-2041957-ENSP0000041057142 (aa)-F6R0H4
ENST00000415400DHX30-203613-ENSP0000039516642 (aa)-F6R0H4
ENST00000445061DHX30-2054065XM_006713033ENSP000004056201194 (aa)XP_006713096Q7L2E3
ENST00000492893DHX30-214601--- (aa)--
ENST00000348968DHX30-2013994XM_011533497ENSP000003434421166 (aa)XP_011531799H7BXY3
Gene Model
Click here to download ENSG00000132153's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000132153's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000132153DHX306333.858ENSG00000135829DHX95833.858
ENSG00000132153DHX306442.105ENSG00000047188YTHDC25344.138
ENSG00000132153DHX306533.455ENSG00000067248DHX295734.496
ENSG00000132153DHX305031.088ENSG00000140829DHX386832.110
ENSG00000132153DHX306336.869ENSG00000174953DHX369541.232
ENSG00000132153DHX305533.883ENSG00000204560DHX169430.981
ENSG00000132153DHX306050.242ENSG00000163214DHX578050.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000132153DHX309153.236ENSAPOG00000023675dhx309548.551Acanthochromis_polyacanthus
ENSG00000132153DHX3010098.528ENSAMEG00000013112DHX309896.904Ailuropoda_melanoleuca
ENSG00000132153DHX308756.250ENSACIG00000017560dhx309156.250Amphilophus_citrinellus
ENSG00000132153DHX309253.043ENSAOCG00000021534-9253.313Amphiprion_ocellaris
ENSG00000132153DHX309252.781ENSAOCG00000017807dhx309153.044Amphiprion_ocellaris
ENSG00000132153DHX309252.632ENSAPEG00000004418dhx309152.632Amphiprion_percula
ENSG00000132153DHX309949.782ENSATEG00000008254dhx309150.045Anabas_testudineus
ENSG00000132153DHX309977.355ENSAPLG00000015682DHX309977.355Anas_platyrhynchos
ENSG00000132153DHX309975.386ENSACAG00000017696DHX309975.235Anolis_carolinensis
ENSG00000132153DHX3010099.394ENSANAG00000024810DHX3010099.330Aotus_nancymaae
ENSG00000132153DHX309152.846ENSACLG00000020306dhx309153.493Astatotilapia_calliptera
ENSG00000132153DHX309850.305ENSAMXG00000014791dhx309154.873Astyanax_mexicanus
ENSG00000132153DHX3010098.528ENSBTAG00000015833DHX309998.528Bos_taurus
ENSG00000132153DHX3010099.307ENSCJAG00000002635DHX3010099.246Callithrix_jacchus
ENSG00000132153DHX3010098.118ENSCAFG00000013038DHX3010098.118Canis_familiaris
ENSG00000132153DHX3010098.788ENSCAFG00020020245DHX3010098.788Canis_lupus_dingo
ENSG00000132153DHX309998.179ENSCHIG00000017619DHX3010096.645Capra_hircus
ENSG00000132153DHX3010098.009ENSTSYG00000005093DHX3010098.009Carlito_syrichta
ENSG00000132153DHX3010093.212ENSCAPG00000011764DHX309993.212Cavia_aperea
ENSG00000132153DHX3010097.406ENSCPOG00000000699DHX3010097.406Cavia_porcellus
ENSG00000132153DHX3010099.481ENSCCAG00000032718DHX3010099.481Cebus_capucinus
ENSG00000132153DHX3010099.654ENSCATG00000043684DHX3010099.654Cercocebus_atys
ENSG00000132153DHX3010097.320ENSCLAG00000014660DHX309997.300Chinchilla_lanigera
ENSG00000132153DHX3010099.654ENSCSAG00000015968DHX309999.654Chlorocebus_sabaeus
ENSG00000132153DHX3010095.238ENSCHOG00000002900DHX3010093.132Choloepus_hoffmanni
ENSG00000132153DHX309977.015ENSCPBG00000015231DHX309977.101Chrysemys_picta_bellii
ENSG00000132153DHX3010096.482ENSCANG00000007441DHX3010096.987Colobus_angolensis_palliatus
ENSG00000132153DHX3010098.009ENSCGRG00001014229Dhx3010096.399Cricetulus_griseus_chok1gshd
ENSG00000132153DHX3010098.009ENSCGRG00000017808Dhx3010096.399Cricetulus_griseus_crigri
ENSG00000132153DHX309848.559ENSCSEG00000009744dhx309152.553Cynoglossus_semilaevis
ENSG00000132153DHX309053.396ENSCVAG00000006410dhx309653.912Cyprinodon_variegatus
ENSG00000132153DHX309849.347ENSDARG00000077839dhx309054.449Danio_rerio
ENSG00000132153DHX3010092.024ENSDNOG00000018833DHX309891.486Dasypus_novemcinctus
ENSG00000132153DHX3010098.268ENSDORG00000028764Dhx309998.143Dipodomys_ordii
ENSG00000132153DHX308548.479ENSEBUG00000016505dhx309148.479Eptatretus_burgeri
ENSG00000132153DHX3010098.616ENSEASG00005008553DHX3010098.616Equus_asinus_asinus
ENSG00000132153DHX3010098.961ENSECAG00000015670DHX309998.961Equus_caballus
ENSG00000132153DHX309895.122ENSEEUG00000010045DHX308596.269Erinaceus_europaeus
ENSG00000132153DHX309950.215ENSELUG00000020943dhx309350.260Esox_lucius
ENSG00000132153DHX3010098.788ENSFCAG00000000438DHX3010098.788Felis_catus
ENSG00000132153DHX309976.864ENSFALG00000002009DHX309976.949Ficedula_albicollis
ENSG00000132153DHX3010097.056ENSFDAG00000007132DHX309997.056Fukomys_damarensis
ENSG00000132153DHX309251.265ENSFHEG00000014172dhx308655.732Fundulus_heteroclitus
ENSG00000132153DHX307855.507ENSGMOG00000008538dhx308256.794Gadus_morhua
ENSG00000132153DHX309976.692ENSGALG00000039830DHX309976.778Gallus_gallus
ENSG00000132153DHX309949.827ENSGAFG00000021403dhx309154.243Gambusia_affinis
ENSG00000132153DHX309850.219ENSGACG00000017828dhx309750.354Gasterosteus_aculeatus
ENSG00000132153DHX309977.487ENSGAGG00000008495DHX309977.225Gopherus_agassizii
ENSG00000132153DHX3010099.913ENSGGOG00000004307DHX3010099.913Gorilla_gorilla
ENSG00000132153DHX309152.947ENSHBUG00000006060dhx309453.493Haplochromis_burtoni
ENSG00000132153DHX3010096.324ENSHGLG00000012643DHX309996.380Heterocephalus_glaber_female
ENSG00000132153DHX3010096.107ENSHGLG00100011194DHX309996.037Heterocephalus_glaber_male
ENSG00000132153DHX309154.715ENSHCOG00000018612dhx308855.784Hippocampus_comes
ENSG00000132153DHX309850.610ENSIPUG00000012285dhx309250.399Ictalurus_punctatus
ENSG00000132153DHX3010098.528ENSSTOG00000022367DHX3010098.492Ictidomys_tridecemlineatus
ENSG00000132153DHX309997.572ENSJJAG00000007025-9897.572Jaculus_jaculus
ENSG00000132153DHX309353.194ENSKMAG00000015124dhx309353.369Kryptolebias_marmoratus
ENSG00000132153DHX309849.213ENSLBEG00000016705dhx308753.789Labrus_bergylta
ENSG00000132153DHX306863.889ENSLACG00000009404DHX309663.985Latimeria_chalumnae
ENSG00000132153DHX309855.360ENSLOCG00000010283dhx309855.252Lepisosteus_oculatus
ENSG00000132153DHX309997.485ENSLAFG00000028880DHX3010096.618Loxodonta_africana
ENSG00000132153DHX3010099.654ENSMFAG00000033894DHX3010099.654Macaca_fascicularis
ENSG00000132153DHX3010099.654ENSMMUG00000003820DHX309999.654Macaca_mulatta
ENSG00000132153DHX3010099.654ENSMNEG00000035478DHX3010099.654Macaca_nemestrina
ENSG00000132153DHX3010099.481ENSMLEG00000023203DHX3010099.481Mandrillus_leucophaeus
ENSG00000132153DHX309850.174ENSMAMG00000014611dhx309153.476Mastacembelus_armatus
ENSG00000132153DHX309152.846ENSMZEG00005025092dhx309153.493Maylandia_zebra
ENSG00000132153DHX309975.153ENSMGAG00000001216DHX3010075.153Meleagris_gallopavo
ENSG00000132153DHX3010097.835ENSMAUG00000021404Dhx309997.639Mesocricetus_auratus
ENSG00000132153DHX3010098.182ENSMICG00000008784DHX3010098.182Microcebus_murinus
ENSG00000132153DHX3010097.922ENSMOCG00000009984Dhx309997.822Microtus_ochrogaster
ENSG00000132153DHX309054.651ENSMMOG00000016828dhx309554.575Mola_mola
ENSG00000132153DHX309994.796ENSMODG00000014285DHX309992.219Monodelphis_domestica
ENSG00000132153DHX309152.966ENSMALG00000020479dhx309253.241Monopterus_albus
ENSG00000132153DHX309997.832MGP_CAROLIEiJ_G0032725Dhx3010096.049Mus_caroli
ENSG00000132153DHX3010097.835ENSMUSG00000032480Dhx3010097.655Mus_musculus
ENSG00000132153DHX3010097.770MGP_PahariEiJ_G0015592Dhx3010097.739Mus_pahari
ENSG00000132153DHX3010097.599MGP_SPRETEiJ_G0033873Dhx3010097.571Mus_spretus
ENSG00000132153DHX3010098.660ENSMPUG00000015013DHX3010098.660Mustela_putorius_furo
ENSG00000132153DHX3010098.442ENSNGAG00000023148Dhx309998.228Nannospalax_galili
ENSG00000132153DHX309053.927ENSNBRG00000012539dhx309154.516Neolamprologus_brichardi
ENSG00000132153DHX309497.664ENSNLEG00000006367DHX3010097.664Nomascus_leucogenys
ENSG00000132153DHX3010094.724ENSMEUG00000002926DHX3010094.724Notamacropus_eugenii
ENSG00000132153DHX3010097.571ENSOPRG00000017190DHX3010097.571Ochotona_princeps
ENSG00000132153DHX3010096.998ENSODEG00000012770-9996.804Octodon_degus
ENSG00000132153DHX309176.321ENSODEG00000007220-9574.446Octodon_degus
ENSG00000132153DHX309849.869ENSONIG00000009631dhx309750.712Oreochromis_niloticus
ENSG00000132153DHX309981.385ENSOANG00000010513-9981.385Ornithorhynchus_anatinus
ENSG00000132153DHX3010097.054ENSOCUG00000006515DHX3010097.054Oryctolagus_cuniculus
ENSG00000132153DHX309849.476ENSORLG00000017276dhx308953.167Oryzias_latipes
ENSG00000132153DHX309849.391ENSORLG00020010224dhx308953.789Oryzias_latipes_hni
ENSG00000132153DHX309849.304ENSORLG00015010148dhx309153.445Oryzias_latipes_hsok
ENSG00000132153DHX309848.135ENSOMEG00000005351dhx308953.862Oryzias_melastigma
ENSG00000132153DHX3010097.463ENSOGAG00000012526DHX3010097.463Otolemur_garnettii
ENSG00000132153DHX308198.674ENSOARG00000002897DHX309998.674Ovis_aries
ENSG00000132153DHX3010097.791ENSPPAG00000034330DHX3010097.791Pan_paniscus
ENSG00000132153DHX3010098.788ENSPPRG00000022811DHX3010098.788Panthera_pardus
ENSG00000132153DHX3010095.238ENSPTIG00000015582DHX309596.150Panthera_tigris_altaica
ENSG00000132153DHX30100100.000ENSPTRG00000014877DHX30100100.000Pan_troglodytes
ENSG00000132153DHX3010098.630ENSPANG00000014291DHX3010098.405Papio_anubis
ENSG00000132153DHX309355.992ENSPKIG00000000741dhx309456.645Paramormyrops_kingsleyae
ENSG00000132153DHX309967.208ENSPSIG00000011740DHX309965.995Pelodiscus_sinensis
ENSG00000132153DHX3010097.749ENSPEMG00000014177Dhx309997.069Peromyscus_maniculatus_bairdii
ENSG00000132153DHX309945.729ENSPMAG00000001958dhx3010046.087Petromyzon_marinus
ENSG00000132153DHX309994.883ENSPCIG00000013492DHX309592.383Phascolarctos_cinereus
ENSG00000132153DHX306056.114ENSPFOG00000015329dhx308956.114Poecilia_formosa
ENSG00000132153DHX309053.797ENSPMEG00000022750dhx308954.329Poecilia_mexicana
ENSG00000132153DHX309153.702ENSPREG00000010021dhx309254.332Poecilia_reticulata
ENSG00000132153DHX3010099.497ENSPPYG00000013914DHX3010099.497Pongo_abelii
ENSG00000132153DHX3010088.095ENSPCAG00000002209DHX307498.367Procavia_capensis
ENSG00000132153DHX3010098.355ENSPCOG00000025552DHX3010098.355Propithecus_coquereli
ENSG00000132153DHX309997.455ENSPVAG00000010183DHX3010097.455Pteropus_vampyrus
ENSG00000132153DHX308253.822ENSPNYG00000014217dhx308454.516Pundamilia_nyererei
ENSG00000132153DHX309850.476ENSPNAG00000002192dhx309254.312Pygocentrus_nattereri
ENSG00000132153DHX3010097.922ENSRNOG00000029194Dhx3010097.739Rattus_norvegicus
ENSG00000132153DHX3010096.482ENSRBIG00000034012DHX3010096.482Rhinopithecus_bieti
ENSG00000132153DHX3010099.654ENSRROG00000039143DHX3010099.654Rhinopithecus_roxellana
ENSG00000132153DHX3010096.231ENSSBOG00000035810DHX3010096.231Saimiri_boliviensis_boliviensis
ENSG00000132153DHX3010094.891ENSSHAG00000006980DHX3010094.891Sarcophilus_harrisii
ENSG00000132153DHX309353.347ENSSFOG00015018714dhx309153.806Scleropages_formosus
ENSG00000132153DHX309153.292ENSSMAG00000020068dhx309348.821Scophthalmus_maximus
ENSG00000132153DHX309849.956ENSSDUG00000019188dhx309250.044Seriola_dumerili
ENSG00000132153DHX309350.415ENSSLDG00000008176dhx309850.507Seriola_lalandi_dorsalis
ENSG00000132153DHX309975.620ENSSPUG00000019160DHX309775.901Sphenodon_punctatus
ENSG00000132153DHX309949.913ENSSPAG00000022184dhx309153.674Stegastes_partitus
ENSG00000132153DHX3010098.268ENSSSCG00000011342DHX3010098.068Sus_scrofa
ENSG00000132153DHX309977.652ENSTGUG00000000112-9977.826Taeniopygia_guttata
ENSG00000132153DHX309847.064ENSTRUG00000011263dhx309351.012Takifugu_rubripes
ENSG00000132153DHX308562.626ENSTRUG00000020111DHX309162.626Takifugu_rubripes
ENSG00000132153DHX309949.308ENSTNIG00000008523dhx309353.862Tetraodon_nigroviridis
ENSG00000132153DHX3010098.241ENSTTRG00000002314DHX3010098.241Tursiops_truncatus
ENSG00000132153DHX309298.654ENSUAMG00000017241DHX3010098.654Ursus_americanus
ENSG00000132153DHX309087.931ENSUMAG00000001274DHX309386.660Ursus_maritimus
ENSG00000132153DHX309498.438ENSVVUG00000029792DHX308997.753Vulpes_vulpes
ENSG00000132153DHX309957.799ENSXETG00000004213dhx309857.659Xenopus_tropicalis
ENSG00000132153DHX309452.923ENSXCOG00000015021dhx309453.702Xiphophorus_couchianus
ENSG00000132153DHX309949.481ENSXMAG00000016336dhx308854.329Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002151G-quadruplex RNA binding21873635.IBAFunction
GO:0003682chromatin binding18063578.IDAFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding29100085.IDAFunction
GO:0003725double-stranded RNA binding21266579.IDAFunction
GO:0004003ATP-dependent DNA helicase activity21873635.IBAFunction
GO:0004004ATP-dependent RNA helicase activity29100085.IDAFunction
GO:0005515protein binding17932509.21903422.23455922.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm29100085.IDAComponent
GO:0005739mitochondrion29100085.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0007417central nervous system development-ISSProcess
GO:0032508DNA duplex unwinding-IEAProcess
GO:0034459ATP-dependent 3'-5' RNA helicase activity21873635.IBAFunction
GO:0035770ribonucleoprotein granule25683715.IDAComponent
GO:0042645mitochondrial nucleoid18063578.25683715.IDAComponent
GO:1902775mitochondrial large ribosomal subunit assembly25683715.IMPProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us