EuRBPDB

Description

RBDs

RBPome

PRI

Expression

Transcripts

Gene Model

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000132467 (Gene tree)
Gene ID: 57050
Gene Symbol: UTP3
Alias: FLJ23256|DKFZp761F222|SAS10|CRLZ1
Full Name: UTP3 small subunit processome component
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 2,073 bases
Position: chr4:70,688,479-70,690,551
Accession: 24477
RBP type: canonical RBP
Summary: (UTP3 Small Subunit Processome Component) is a Protein Coding gene. Diseases associated with UTP3 include Common Bile Duct Disease. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression. An important paralog of this gene is NGDN.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000254803	Sas10_Utp3	PF04000.15	1.1e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Protein-RNA interaction（RNA-Binding Site）

Click here to download all RNA binding sites

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000254803	UTP3-201	2073	-	ENSP00000254803	479 (aa)	-	Q9NQZ2

Gene Model

Click here to download ENSG00000132467's gene model file

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000132467	rs111485612	4	70689257	T	Glucagon levels in response to oral glucose tolerance test (120 minutes)	29093273	[0.09-0.228] unit increase	0.159	EFO_0008463\|EFO_0004307

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000132467's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000132467	UTP3	93	51.957	ENSAPOG00000018006	utp3	93	50.976	Acanthochromis_polyacanthus
ENSG00000132467	UTP3	100	87.891	ENSAMEG00000019540	UTP3	100	88.100	Ailuropoda_melanoleuca
ENSG00000132467	UTP3	93	46.309	ENSACIG00000010913	utp3	93	44.743	Amphilophus_citrinellus
ENSG00000132467	UTP3	97	50.607	ENSAOCG00000016134	utp3	99	49.390	Amphiprion_ocellaris
ENSG00000132467	UTP3	97	50.202	ENSAPEG00000003914	utp3	99	48.984	Amphiprion_percula
ENSG00000132467	UTP3	93	49.130	ENSATEG00000024940	utp3	99	48.373	Anabas_testudineus
ENSG00000132467	UTP3	77	57.520	ENSACAG00000012860	UTP3	100	51.406	Anolis_carolinensis
ENSG00000132467	UTP3	100	94.375	ENSANAG00000031723	UTP3	100	93.750	Aotus_nancymaae
ENSG00000132467	UTP3	97	50.716	ENSACLG00000015170	utp3	99	49.491	Astatotilapia_calliptera
ENSG00000132467	UTP3	74	55.556	ENSAMXG00000032941	utp3	89	55.556	Astyanax_mexicanus
ENSG00000132467	UTP3	100	86.486	ENSBTAG00000009310	UTP3	100	86.279	Bos_taurus
ENSG00000132467	UTP3	100	95.021	ENSCJAG00000042824	UTP3	100	94.606	Callithrix_jacchus
ENSG00000132467	UTP3	100	87.265	ENSCAFG00000002913	UTP3	100	87.474	Canis_familiaris
ENSG00000132467	UTP3	100	81.497	ENSCAFG00020027071	UTP3	100	81.705	Canis_lupus_dingo
ENSG00000132467	UTP3	100	86.486	ENSCHIG00000002276	UTP3	100	86.279	Capra_hircus
ENSG00000132467	UTP3	99	84.632	ENSCPOG00000005869	UTP3	99	83.158	Cavia_porcellus
ENSG00000132467	UTP3	100	96.451	ENSCCAG00000032341	UTP3	100	96.451	Cebus_capucinus
ENSG00000132467	UTP3	100	97.495	ENSCATG00000016403	UTP3	100	97.495	Cercocebus_atys
ENSG00000132467	UTP3	97	85.622	ENSCLAG00000017606	UTP3	100	86.902	Chinchilla_lanigera
ENSG00000132467	UTP3	100	96.680	ENSCSAG00000000420	UTP3	100	96.680	Chlorocebus_sabaeus
ENSG00000132467	UTP3	99	54.767	ENSCPBG00000019489	UTP3	99	55.040	Chrysemys_picta_bellii
ENSG00000132467	UTP3	91	35.778	ENSCING00000007582	-	78	38.503	Ciona_intestinalis
ENSG00000132467	UTP3	93	35.824	ENSCSAVG00000010608	-	94	35.307	Ciona_savignyi
ENSG00000132467	UTP3	100	96.875	ENSCANG00000016915	UTP3	100	96.875	Colobus_angolensis_palliatus
ENSG00000132467	UTP3	100	85.804	ENSCGRG00001001299	Utp3	100	85.804	Cricetulus_griseus_chok1gshd
ENSG00000132467	UTP3	100	85.595	ENSCGRG00000019120	Utp3	100	85.595	Cricetulus_griseus_crigri
ENSG00000132467	UTP3	85	44.203	ENSCSEG00000021698	utp3	89	48.333	Cynoglossus_semilaevis
ENSG00000132467	UTP3	93	51.092	ENSCVAG00000011971	utp3	93	49.567	Cyprinodon_variegatus
ENSG00000132467	UTP3	93	49.011	ENSDARG00000056720	utp3	93	50.110	Danio_rerio
ENSG00000132467	UTP3	100	84.551	ENSDNOG00000002962	UTP3	100	84.760	Dasypus_novemcinctus
ENSG00000132467	UTP3	100	85.239	ENSDORG00000023913	Utp3	100	86.071	Dipodomys_ordii
ENSG00000132467	UTP3	74	37.067	FBgn0029755	Sas10	80	40.000	Drosophila_melanogaster
ENSG00000132467	UTP3	93	38.511	ENSEBUG00000015686	utp3	76	40.160	Eptatretus_burgeri
ENSG00000132467	UTP3	100	88.958	ENSEASG00005016702	UTP3	100	89.167	Equus_asinus_asinus
ENSG00000132467	UTP3	100	88.958	ENSECAG00000005387	UTP3	100	89.167	Equus_caballus
ENSG00000132467	UTP3	93	50.870	ENSELUG00000001527	utp3	93	49.558	Esox_lucius
ENSG00000132467	UTP3	100	88.773	ENSFCAG00000007268	UTP3	100	87.734	Felis_catus
ENSG00000132467	UTP3	77	55.076	ENSFALG00000014560	UTP3	77	56.499	Ficedula_albicollis
ENSG00000132467	UTP3	91	49.667	ENSFHEG00000018565	utp3	86	49.002	Fundulus_heteroclitus
ENSG00000132467	UTP3	84	49.024	ENSGMOG00000001824	utp3	93	52.493	Gadus_morhua
ENSG00000132467	UTP3	74	57.951	ENSGALG00000047103	UTP3	69	58.333	Gallus_gallus
ENSG00000132467	UTP3	93	51.416	ENSGAFG00000012330	utp3	94	50.108	Gambusia_affinis
ENSG00000132467	UTP3	76	55.914	ENSGACG00000007417	utp3	90	56.684	Gasterosteus_aculeatus
ENSG00000132467	UTP3	99	54.819	ENSGAGG00000003975	UTP3	99	52.738	Gopherus_agassizii
ENSG00000132467	UTP3	100	99.165	ENSGGOG00000025335	UTP3	100	99.165	Gorilla_gorilla
ENSG00000132467	UTP3	97	49.692	ENSHBUG00000003276	utp3	99	48.875	Haplochromis_burtoni
ENSG00000132467	UTP3	97	83.190	ENSHGLG00000020163	UTP3	100	82.672	Heterocephalus_glaber_female
ENSG00000132467	UTP3	97	82.974	ENSHGLG00100020125	UTP3	100	82.463	Heterocephalus_glaber_male
ENSG00000132467	UTP3	91	48.889	ENSHCOG00000020540	utp3	83	50.649	Hippocampus_comes
ENSG00000132467	UTP3	74	54.223	ENSIPUG00000014510	Utp3	93	49.783	Ictalurus_punctatus
ENSG00000132467	UTP3	100	84.551	ENSSTOG00000029126	UTP3	100	84.760	Ictidomys_tridecemlineatus
ENSG00000132467	UTP3	100	82.046	ENSJJAG00000014891	Utp3	100	80.793	Jaculus_jaculus
ENSG00000132467	UTP3	93	50.000	ENSKMAG00000004879	utp3	93	48.701	Kryptolebias_marmoratus
ENSG00000132467	UTP3	93	51.322	ENSLBEG00000024055	utp3	93	49.561	Labrus_bergylta
ENSG00000132467	UTP3	93	50.108	ENSLACG00000009975	utp3	93	50.644	Latimeria_chalumnae
ENSG00000132467	UTP3	82	55.611	ENSLOCG00000001449	utp3	97	57.459	Lepisosteus_oculatus
ENSG00000132467	UTP3	100	79.332	ENSLAFG00000017017	UTP3	100	78.497	Loxodonta_africana
ENSG00000132467	UTP3	100	97.286	ENSMFAG00000013579	UTP3	100	97.286	Macaca_fascicularis
ENSG00000132467	UTP3	100	97.077	ENSMMUG00000014229	UTP3	100	97.077	Macaca_mulatta
ENSG00000132467	UTP3	100	97.286	ENSMNEG00000005112	UTP3	100	97.286	Macaca_nemestrina
ENSG00000132467	UTP3	100	97.912	ENSMLEG00000022236	UTP3	100	97.912	Mandrillus_leucophaeus
ENSG00000132467	UTP3	93	51.549	ENSMAMG00000015467	utp3	93	50.881	Mastacembelus_armatus
ENSG00000132467	UTP3	97	50.716	ENSMZEG00005014455	utp3	99	49.491	Maylandia_zebra
ENSG00000132467	UTP3	56	53.506	ENSMGAG00000009998	UTP3	89	47.875	Meleagris_gallopavo
ENSG00000132467	UTP3	100	84.342	ENSMAUG00000017935	Utp3	100	84.760	Mesocricetus_auratus
ENSG00000132467	UTP3	100	83.507	ENSMOCG00000005434	Utp3	100	83.716	Microtus_ochrogaster
ENSG00000132467	UTP3	85	50.711	ENSMMOG00000010804	utp3	80	51.706	Mola_mola
ENSG00000132467	UTP3	93	71.429	ENSMODG00000019084	UTP3	99	71.336	Monodelphis_domestica
ENSG00000132467	UTP3	92	48.802	ENSMALG00000003443	utp3	93	49.348	Monopterus_albus
ENSG00000132467	UTP3	100	85.804	MGP_CAROLIEiJ_G0027375	Utp3	100	83.925	Mus_caroli
ENSG00000132467	UTP3	100	84.969	ENSMUSG00000070697	Utp3	100	83.090	Mus_musculus
ENSG00000132467	UTP3	75	84.034	MGP_PahariEiJ_G0017153	-	76	82.633	Mus_pahari
ENSG00000132467	UTP3	100	85.177	MGP_SPRETEiJ_G0028372	Utp3	100	83.507	Mus_spretus
ENSG00000132467	UTP3	100	85.804	ENSMPUG00000019074	UTP3	100	84.760	Mustela_putorius_furo
ENSG00000132467	UTP3	100	87.292	ENSMLUG00000003722	UTP3	100	87.500	Myotis_lucifugus
ENSG00000132467	UTP3	100	82.046	ENSNGAG00000012521	Utp3	100	82.255	Nannospalax_galili
ENSG00000132467	UTP3	97	49.692	ENSNBRG00000020374	utp3	99	48.466	Neolamprologus_brichardi
ENSG00000132467	UTP3	100	97.912	ENSNLEG00000018563	UTP3	100	97.912	Nomascus_leucogenys
ENSG00000132467	UTP3	97	83.836	ENSODEG00000018723	UTP3	100	82.463	Octodon_degus
ENSG00000132467	UTP3	93	52.070	ENSONIG00000003918	utp3	93	50.649	Oreochromis_niloticus
ENSG00000132467	UTP3	73	90.541	ENSOANG00000013694	-	99	90.541	Ornithorhynchus_anatinus
ENSG00000132467	UTP3	100	82.463	ENSOCUG00000010003	UTP3	100	82.255	Oryctolagus_cuniculus
ENSG00000132467	UTP3	93	50.877	ENSORLG00000004019	utp3	94	48.904	Oryzias_latipes
ENSG00000132467	UTP3	93	52.298	ENSORLG00020020306	utp3	94	50.109	Oryzias_latipes_hni
ENSG00000132467	UTP3	93	51.535	ENSORLG00015016052	utp3	94	49.561	Oryzias_latipes_hsok
ENSG00000132467	UTP3	93	50.858	ENSOMEG00000022073	utp3	94	48.927	Oryzias_melastigma
ENSG00000132467	UTP3	100	86.100	ENSOGAG00000012878	UTP3	100	85.892	Otolemur_garnettii
ENSG00000132467	UTP3	100	86.694	ENSOARG00000007800	UTP3	100	86.486	Ovis_aries
ENSG00000132467	UTP3	100	99.791	ENSPPAG00000019684	UTP3	100	99.791	Pan_paniscus
ENSG00000132467	UTP3	100	88.518	ENSPPRG00000015468	UTP3	100	88.727	Panthera_pardus
ENSG00000132467	UTP3	100	87.891	ENSPTIG00000006703	UTP3	100	88.100	Panthera_tigris_altaica
ENSG00000132467	UTP3	100	97.495	ENSPANG00000008263	UTP3	100	97.495	Papio_anubis
ENSG00000132467	UTP3	93	48.908	ENSPKIG00000012883	utp3	93	48.366	Paramormyrops_kingsleyae
ENSG00000132467	UTP3	76	61.140	ENSPSIG00000000105	UTP3	62	60.881	Pelodiscus_sinensis
ENSG00000132467	UTP3	93	47.556	ENSPMGG00000023527	utp3	82	51.194	Periophthalmus_magnuspinnatus
ENSG00000132467	UTP3	100	85.386	ENSPEMG00000019223	Utp3	100	86.639	Peromyscus_maniculatus_bairdii
ENSG00000132467	UTP3	93	50.216	ENSPFOG00000014528	utp3	93	49.892	Poecilia_formosa
ENSG00000132467	UTP3	93	50.000	ENSPLAG00000005600	utp3	93	49.892	Poecilia_latipinna
ENSG00000132467	UTP3	93	50.870	ENSPMEG00000019359	utp3	93	49.892	Poecilia_mexicana
ENSG00000132467	UTP3	93	50.655	ENSPREG00000005341	utp3	93	49.237	Poecilia_reticulata
ENSG00000132467	UTP3	100	98.539	ENSPPYG00000014810	UTP3	100	98.539	Pongo_abelii
ENSG00000132467	UTP3	100	83.368	ENSPCAG00000012879	UTP3	100	83.368	Procavia_capensis
ENSG00000132467	UTP3	100	86.515	ENSPVAG00000004333	UTP3	100	86.929	Pteropus_vampyrus
ENSG00000132467	UTP3	93	48.000	ENSPNYG00000017771	utp3	93	46.222	Pundamilia_nyererei
ENSG00000132467	UTP3	93	49.130	ENSPNAG00000000182	utp3	93	48.380	Pygocentrus_nattereri
ENSG00000132467	UTP3	100	84.134	ENSRNOG00000003599	Utp3	100	82.463	Rattus_norvegicus
ENSG00000132467	UTP3	100	97.077	ENSRBIG00000030025	UTP3	100	97.077	Rhinopithecus_bieti
ENSG00000132467	UTP3	100	97.077	ENSRROG00000006709	UTP3	100	97.077	Rhinopithecus_roxellana
ENSG00000132467	UTP3	100	96.250	ENSSBOG00000019914	UTP3	100	96.250	Saimiri_boliviensis_boliviensis
ENSG00000132467	UTP3	91	68.904	ENSSHAG00000018226	UTP3	99	64.549	Sarcophilus_harrisii
ENSG00000132467	UTP3	93	49.558	ENSSFOG00015007775	utp3	93	48.009	Scleropages_formosus
ENSG00000132467	UTP3	93	50.327	ENSSMAG00000015156	utp3	93	49.455	Scophthalmus_maximus
ENSG00000132467	UTP3	93	50.441	ENSSDUG00000014843	utp3	93	48.908	Seriola_dumerili
ENSG00000132467	UTP3	74	53.930	ENSSPUG00000007404	UTP3	74	54.743	Sphenodon_punctatus
ENSG00000132467	UTP3	93	51.641	ENSSPAG00000007106	utp3	93	51.844	Stegastes_partitus
ENSG00000132467	UTP3	100	87.265	ENSSSCG00000028466	UTP3	100	87.474	Sus_scrofa
ENSG00000132467	UTP3	93	49.448	ENSTRUG00000014591	utp3	93	48.894	Takifugu_rubripes
ENSG00000132467	UTP3	93	47.186	ENSTNIG00000014783	utp3	96	51.467	Tetraodon_nigroviridis
ENSG00000132467	UTP3	100	86.013	ENSTTRG00000008390	UTP3	100	86.848	Tursiops_truncatus
ENSG00000132467	UTP3	100	87.474	ENSUAMG00000008914	UTP3	100	87.683	Ursus_americanus
ENSG00000132467	UTP3	100	88.100	ENSUMAG00000003743	UTP3	100	88.100	Ursus_maritimus
ENSG00000132467	UTP3	79	83.113	ENSVVUG00000004285	UTP3	91	83.377	Vulpes_vulpes
ENSG00000132467	UTP3	97	53.079	ENSXETG00000026859	utp3	97	52.854	Xenopus_tropicalis
ENSG00000132467	UTP3	93	51.747	ENSXMAG00000017071	utp3	93	49.453	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003723	RNA binding	22658674.22681889.	HDA	Function
GO:0005515	protein binding	25416956.	IPI	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	IDA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006364	rRNA processing	-	TAS	Process
GO:0007420	brain development	-	ISS	Process
GO:0032040	small-subunit processome	21873635.	IBA	Component