EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000132603 (Gene tree)
Gene ID
51388
Gene Symbol
NIP7
Alias
CGI-37|FLJ10296|HSPC031|KD93
Full Name
nucleolar pre-rRNA processing protein NIP7
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
5,116 bases
Position
chr16:69,337,996-69,343,111
Accession
24328
RBP type
canonical RBP
Summary
(Nucleolar Pre-RRNA Processing Protein NIP7) is a Protein Coding gene. Diseases associated with NIP7 include Shwachman-Diamond Syndrome 1. Gene Ontology (GO) annotations related to this gene include RNA binding. An important paralog of this gene is CKS1B.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000254940UPF0113PF03657.133.4e-2211
ENSP00000464348UPF0113PF03657.133.8e-1211
ENSP00000464159UPF0113PF03657.134.7e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
15522784Crystal structure of KD93, a novel protein expressed in human hematopoietic stem/progenitor cells.J Struct Biol2004 DecLiu JF-
17187224Isolation, sequence analysis and expression profile of a novel porcine gene, NIP7, differentially expressed in the Longissimus dorsi muscle tissues from Meishan, Meishan x Large White cross and Large White pigs.Mol Biol Rep2007 DecLiu GY-
27832721Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions.J Bioinform Comput Biol2017 AprMedvedev KEdoi: 10.1142/S0219720016500360
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000565034NIP7-206639--- (aa)--
ENST00000563364NIP7-2053936--- (aa)--
ENST00000569637NIP7-2081099-ENSP00000463739110 (aa)-J3QLW7
ENST00000562131NIP7-203572--- (aa)--
ENST00000254941NIP7-2021887-ENSP00000254941133 (aa)-Q9Y221
ENST00000254940NIP7-2012402-ENSP00000254940180 (aa)-Q9Y221
ENST00000567202NIP7-207646-ENSP0000046434879 (aa)-J3QRR4
ENST00000562523NIP7-204760-ENSP0000046415970 (aa)-J3QRD6
Gene Model
Click here to download ENSG00000132603's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000132603's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000132603NIP710084.444ENSAPOG00000005901nip710084.444Acanthochromis_polyacanthus
ENSG00000132603NIP710097.778ENSAMEG00000007542NIP710097.778Ailuropoda_melanoleuca
ENSG00000132603NIP710084.444ENSAOCG00000017498nip710084.444Amphiprion_ocellaris
ENSG00000132603NIP710084.444ENSAPEG00000002824nip710084.444Amphiprion_percula
ENSG00000132603NIP710083.889ENSATEG00000019165nip710083.889Anabas_testudineus
ENSG00000132603NIP79490.909ENSACAG00000003476NIP710083.889Anolis_carolinensis
ENSG00000132603NIP710099.444ENSANAG00000037006NIP710099.444Aotus_nancymaae
ENSG00000132603NIP710083.333ENSACLG00000012368nip710083.333Astatotilapia_calliptera
ENSG00000132603NIP710082.222ENSAMXG00000003634nip710068.889Astyanax_mexicanus
ENSG00000132603NIP710098.333ENSBTAG00000001666NIP710098.333Bos_taurus
ENSG00000132603NIP79961.453WBGene00016607C43E11.99961.453Caenorhabditis_elegans
ENSG00000132603NIP710099.444ENSCJAG00000015364NIP710099.444Callithrix_jacchus
ENSG00000132603NIP710096.111ENSCAFG00000029835NIP79596.111Canis_familiaris
ENSG00000132603NIP710097.778ENSCHIG00000019332-10097.778Capra_hircus
ENSG00000132603NIP710098.333ENSTSYG00000032526NIP710098.333Carlito_syrichta
ENSG00000132603NIP710096.667ENSCPOG00000003712NIP710096.667Cavia_porcellus
ENSG00000132603NIP710099.444ENSCCAG00000023481NIP710099.444Cebus_capucinus
ENSG00000132603NIP710099.444ENSCATG00000031010NIP710099.444Cercocebus_atys
ENSG00000132603NIP710073.333ENSCATG00000006216-8073.333Cercocebus_atys
ENSG00000132603NIP710095.556ENSCLAG00000007579NIP710095.556Chinchilla_lanigera
ENSG00000132603NIP79471.212ENSCSAG00000015707-10063.889Chlorocebus_sabaeus
ENSG00000132603NIP710098.889ENSCSAG00000004137NIP710098.889Chlorocebus_sabaeus
ENSG00000132603NIP79496.970ENSCHOG00000010787NIP79986.111Choloepus_hoffmanni
ENSG00000132603NIP710090.000ENSCPBG00000027051NIP710090.000Chrysemys_picta_bellii
ENSG00000132603NIP79481.818ENSCING00000006610-10073.889Ciona_intestinalis
ENSG00000132603NIP79481.818ENSCSAVG00000009157-10073.889Ciona_savignyi
ENSG00000132603NIP710099.444ENSCANG00000029815NIP710099.444Colobus_angolensis_palliatus
ENSG00000132603NIP79881.921ENSCGRG00001020027-9581.921Cricetulus_griseus_chok1gshd
ENSG00000132603NIP710088.889ENSCGRG00001010780-10088.889Cricetulus_griseus_chok1gshd
ENSG00000132603NIP710098.333ENSCGRG00001008966-10098.333Cricetulus_griseus_chok1gshd
ENSG00000132603NIP710098.333ENSCGRG00000001344-10098.333Cricetulus_griseus_crigri
ENSG00000132603NIP710087.778ENSCGRG00000000567-10087.778Cricetulus_griseus_crigri
ENSG00000132603NIP79283.636ENSCGRG00000007805-10083.636Cricetulus_griseus_crigri
ENSG00000132603NIP710084.444ENSCSEG00000011356nip710084.444Cynoglossus_semilaevis
ENSG00000132603NIP710083.889ENSCVAG00000012170nip710083.889Cyprinodon_variegatus
ENSG00000132603NIP710082.222ENSDARG00000059075nip710082.222Danio_rerio
ENSG00000132603NIP710098.333ENSDNOG00000006821NIP710098.333Dasypus_novemcinctus
ENSG00000132603NIP710097.778ENSDORG00000027163Nip710097.778Dipodomys_ordii
ENSG00000132603NIP79472.727FBgn0039233CG70069964.804Drosophila_melanogaster
ENSG00000132603NIP710097.778ENSETEG00000013549NIP710097.778Echinops_telfairi
ENSG00000132603NIP79483.333ENSEBUG00000015270nip79977.095Eptatretus_burgeri
ENSG00000132603NIP710099.444ENSEASG00005021312NIP710099.444Equus_asinus_asinus
ENSG00000132603NIP710099.444ENSECAG00000036727NIP710099.444Equus_caballus
ENSG00000132603NIP710098.333ENSEEUG00000008660NIP710098.333Erinaceus_europaeus
ENSG00000132603NIP710097.778ENSFCAG00000013574NIP710097.778Felis_catus
ENSG00000132603NIP79487.879ENSFALG00000002761NIP710084.472Ficedula_albicollis
ENSG00000132603NIP710096.667ENSFDAG00000015970NIP710096.667Fukomys_damarensis
ENSG00000132603NIP710065.591ENSFHEG00000008752nip710065.591Fundulus_heteroclitus
ENSG00000132603NIP79487.879ENSGMOG00000005786nip79580.488Gadus_morhua
ENSG00000132603NIP710085.556ENSGALG00000000650NIP710085.556Gallus_gallus
ENSG00000132603NIP710083.889ENSGAFG00000009138nip710083.889Gambusia_affinis
ENSG00000132603NIP710080.556ENSGACG00000016301nip710080.556Gasterosteus_aculeatus
ENSG00000132603NIP79493.939ENSGAGG00000000314NIP710090.541Gopherus_agassizii
ENSG00000132603NIP7100100.000ENSGGOG00000022785NIP7100100.000Gorilla_gorilla
ENSG00000132603NIP710079.444ENSGGOG00000007747-10079.444Gorilla_gorilla
ENSG00000132603NIP710083.333ENSHBUG00000020049nip710083.333Haplochromis_burtoni
ENSG00000132603NIP710096.111ENSHGLG00000017478NIP710096.111Heterocephalus_glaber_female
ENSG00000132603NIP710096.111ENSHGLG00100005353NIP710096.111Heterocephalus_glaber_male
ENSG00000132603NIP79487.879ENSHCOG00000018004nip710081.111Hippocampus_comes
ENSG00000132603NIP710082.778ENSIPUG00000007516nip710082.778Ictalurus_punctatus
ENSG00000132603NIP710098.889ENSSTOG00000012871NIP710098.889Ictidomys_tridecemlineatus
ENSG00000132603NIP79987.709ENSJJAG00000017333-10087.709Jaculus_jaculus
ENSG00000132603NIP710073.333ENSJJAG00000001553-10073.333Jaculus_jaculus
ENSG00000132603NIP79697.688ENSJJAG00000018787-9997.590Jaculus_jaculus
ENSG00000132603NIP79489.394ENSKMAG00000018713nip710082.778Kryptolebias_marmoratus
ENSG00000132603NIP710084.444ENSLBEG00000005274nip710084.444Labrus_bergylta
ENSG00000132603NIP710090.000ENSLACG00000006594NIP710090.000Latimeria_chalumnae
ENSG00000132603NIP710085.000ENSLOCG00000001379nip710085.000Lepisosteus_oculatus
ENSG00000132603NIP710097.222ENSLAFG00000004830NIP710097.222Loxodonta_africana
ENSG00000132603NIP79679.104ENSMFAG00000002077-10080.263Macaca_fascicularis
ENSG00000132603NIP710099.444ENSMFAG00000046374NIP710099.444Macaca_fascicularis
ENSG00000132603NIP710093.333ENSMFAG00000013965-10093.333Macaca_fascicularis
ENSG00000132603NIP710092.778ENSMMUG00000046403-10092.778Macaca_mulatta
ENSG00000132603NIP794100.000ENSMMUG00000016635-79100.000Macaca_mulatta
ENSG00000132603NIP710075.000ENSMMUG00000043208-8075.000Macaca_mulatta
ENSG00000132603NIP710098.889ENSMNEG00000037905NIP710098.889Macaca_nemestrina
ENSG00000132603NIP79492.424ENSMLEG00000037105-9685.311Mandrillus_leucophaeus
ENSG00000132603NIP710099.444ENSMLEG00000042389NIP710099.444Mandrillus_leucophaeus
ENSG00000132603NIP79679.104ENSMLEG00000030257-10078.947Mandrillus_leucophaeus
ENSG00000132603NIP710085.000ENSMAMG00000020375nip710085.000Mastacembelus_armatus
ENSG00000132603NIP710083.333ENSMZEG00005009767nip710083.333Maylandia_zebra
ENSG00000132603NIP79490.909ENSMGAG00000008556NIP710088.199Meleagris_gallopavo
ENSG00000132603NIP710098.889ENSMAUG00000019255Nip710098.889Mesocricetus_auratus
ENSG00000132603NIP710098.889ENSMICG00000009664NIP710098.889Microcebus_murinus
ENSG00000132603NIP710098.333ENSMOCG00000020110Nip710098.333Microtus_ochrogaster
ENSG00000132603NIP79489.394ENSMMOG00000000657nip710074.444Mola_mola
ENSG00000132603NIP79988.268ENSMODG00000002782NIP79988.268Monodelphis_domestica
ENSG00000132603NIP710084.444ENSMALG00000008166nip710084.444Monopterus_albus
ENSG00000132603NIP710097.778MGP_CAROLIEiJ_G0031530Nip710097.778Mus_caroli
ENSG00000132603NIP710097.778ENSMUSG00000031917Nip710097.778Mus_musculus
ENSG00000132603NIP710097.222MGP_PahariEiJ_G0023130Nip710097.222Mus_pahari
ENSG00000132603NIP710097.778MGP_SPRETEiJ_G0032648Nip710097.778Mus_spretus
ENSG00000132603NIP710098.889ENSMLUG00000011835NIP710098.889Myotis_lucifugus
ENSG00000132603NIP710096.667ENSNGAG00000006098Nip710096.667Nannospalax_galili
ENSG00000132603NIP79976.536ENSNGAG00000012129-9176.536Nannospalax_galili
ENSG00000132603NIP710083.333ENSNBRG00000001950nip710083.333Neolamprologus_brichardi
ENSG00000132603NIP710097.222ENSNLEG00000005492NIP710097.222Nomascus_leucogenys
ENSG00000132603NIP79987.151ENSMEUG00000002818NIP79987.151Notamacropus_eugenii
ENSG00000132603NIP710096.667ENSOPRG00000006981NIP710096.667Ochotona_princeps
ENSG00000132603NIP710096.667ENSODEG00000014849-10096.667Octodon_degus
ENSG00000132603NIP710080.000ENSODEG00000000559-10080.000Octodon_degus
ENSG00000132603NIP710083.333ENSONIG00000017181nip710083.333Oreochromis_niloticus
ENSG00000132603NIP710097.222ENSOCUG00000017652NIP710097.222Oryctolagus_cuniculus
ENSG00000132603NIP79489.394ENSORLG00000011734nip710082.778Oryzias_latipes
ENSG00000132603NIP79489.394ENSORLG00020002338nip710082.778Oryzias_latipes_hni
ENSG00000132603NIP79489.394ENSORLG00015001005nip710082.778Oryzias_latipes_hsok
ENSG00000132603NIP79489.394ENSOMEG00000011688nip710082.222Oryzias_melastigma
ENSG00000132603NIP710098.333ENSOGAG00000008066NIP710098.333Otolemur_garnettii
ENSG00000132603NIP710097.778ENSOARG00000003558NIP710097.778Ovis_aries
ENSG00000132603NIP7100100.000ENSPPAG00000000218NIP7100100.000Pan_paniscus
ENSG00000132603NIP710081.111ENSPPAG00000006091-10081.111Pan_paniscus
ENSG00000132603NIP710097.778ENSPPRG00000009719NIP710097.778Panthera_pardus
ENSG00000132603NIP710097.778ENSPTIG00000010113NIP710097.778Panthera_tigris_altaica
ENSG00000132603NIP710081.111ENSPTRG00000051330-10081.111Pan_troglodytes
ENSG00000132603NIP7100100.000ENSPTRG00000051089NIP7100100.000Pan_troglodytes
ENSG00000132603NIP710099.444ENSPANG00000033665-10099.444Papio_anubis
ENSG00000132603NIP710086.713ENSPANG00000035982-10086.713Papio_anubis
ENSG00000132603NIP710073.889ENSPANG00000029979-8073.889Papio_anubis
ENSG00000132603NIP710083.889ENSPKIG00000020345nip77683.889Paramormyrops_kingsleyae
ENSG00000132603NIP79493.939ENSPSIG00000011210NIP710088.957Pelodiscus_sinensis
ENSG00000132603NIP710098.333ENSPEMG00000011304Nip710098.333Peromyscus_maniculatus_bairdii
ENSG00000132603NIP79988.827ENSPCIG00000012768NIP79988.827Phascolarctos_cinereus
ENSG00000132603NIP79489.394ENSPFOG00000014985nip710083.333Poecilia_formosa
ENSG00000132603NIP79489.394ENSPLAG00000005031nip710083.333Poecilia_latipinna
ENSG00000132603NIP79489.394ENSPMEG00000008213nip710083.333Poecilia_mexicana
ENSG00000132603NIP7100100.000ENSPPYG00000007503NIP7100100.000Pongo_abelii
ENSG00000132603NIP710097.778ENSPCOG00000011060NIP710097.778Propithecus_coquereli
ENSG00000132603NIP710098.333ENSPVAG00000015980NIP710098.333Pteropus_vampyrus
ENSG00000132603NIP710083.333ENSPNYG00000018316nip710083.333Pundamilia_nyererei
ENSG00000132603NIP710083.333ENSPNAG00000027680nip710070.000Pygocentrus_nattereri
ENSG00000132603NIP710097.222ENSRNOG00000020391Nip710097.222Rattus_norvegicus
ENSG00000132603NIP785100.000ENSRBIG00000033803-9980.114Rhinopithecus_bieti
ENSG00000132603NIP79498.485ENSRBIG00000039934-10092.398Rhinopithecus_bieti
ENSG00000132603NIP78389.655ENSRROG00000044739-7868.889Rhinopithecus_roxellana
ENSG00000132603NIP710098.889ENSRROG00000026840NIP710098.889Rhinopithecus_roxellana
ENSG00000132603NIP79956.983YPL211W-9956.983Saccharomyces_cerevisiae
ENSG00000132603NIP710099.444ENSSBOG00000027548NIP710099.444Saimiri_boliviensis_boliviensis
ENSG00000132603NIP710087.222ENSSFOG00015008579nip710087.222Scleropages_formosus
ENSG00000132603NIP710082.778ENSSMAG00000006217nip710082.778Scophthalmus_maximus
ENSG00000132603NIP710082.222ENSSDUG00000002698nip710082.222Seriola_dumerili
ENSG00000132603NIP710082.222ENSSLDG00000005153nip710082.222Seriola_lalandi_dorsalis
ENSG00000132603NIP710097.222ENSSARG00000000303NIP710097.222Sorex_araneus
ENSG00000132603NIP710086.111ENSSPUG00000005858NIP710086.111Sphenodon_punctatus
ENSG00000132603NIP710083.889ENSSPAG00000017699nip710083.889Stegastes_partitus
ENSG00000132603NIP710098.333ENSSSCG00000033741NIP710098.333Sus_scrofa
ENSG00000132603NIP79489.394ENSTGUG00000008073NIP710082.778Taeniopygia_guttata
ENSG00000132603NIP710083.333ENSTRUG00000020267nip710083.333Takifugu_rubripes
ENSG00000132603NIP79489.394ENSTNIG00000004660nip710083.333Tetraodon_nigroviridis
ENSG00000132603NIP710098.889ENSTTRG00000010012NIP710098.889Tursiops_truncatus
ENSG00000132603NIP710097.778ENSUAMG00000022688NIP710097.778Ursus_americanus
ENSG00000132603NIP710097.222ENSUMAG00000018771NIP710097.222Ursus_maritimus
ENSG00000132603NIP710098.889ENSVPAG00000003991NIP710098.889Vicugna_pacos
ENSG00000132603NIP710082.320ENSVVUG00000008406-10082.320Vulpes_vulpes
ENSG00000132603NIP710096.111ENSVVUG00000017160-10096.111Vulpes_vulpes
ENSG00000132603NIP79498.485ENSXETG00000017853nip710090.000Xenopus_tropicalis
ENSG00000132603NIP710083.889ENSXMAG00000025276nip710083.889Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding14660641.17643419.25416956.IPIFunction
GO:0005634nucleus-IDAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus-IDAComponent
GO:0005829cytosol-IDAComponent
GO:0030687preribosome, large subunit precursor21873635.IBAComponent
GO:0042255ribosome assembly-IEAProcess
GO:0042273ribosomal large subunit biogenesis21873635.IBAProcess

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