EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000132676 (Gene tree)
Gene ID
7818
Gene Symbol
DAP3
Alias
MRPS29|DAP-3|MRP-S29|bMRP-10|MGC126058|MGC126059|DKFZp686G12159
Full Name
death associated protein 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
51,051 bases
Position
chr1:155,687,960-155,739,010
Accession
2673
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that also participates in apoptotic pathways which are initiated by tumor necrosis factor-alpha, Fas ligand, and gamma interferon. This protein potentially binds ATP/GTP and might be a functional partner of the mitoribosomal protein S27. Multiple alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. Pseudogenes corresponding to this gene are found on chromosomes 1q and 2q. [provided by RefSeq, Dec 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000445003DAP3PF10236.91.8e-9211
ENSP00000476592DAP3PF10236.91.8e-9211
ENSP00000412605DAP3PF10236.91.9e-9211
ENSP00000341692DAP3PF10236.92.5e-9211
ENSP00000357320DAP3PF10236.92.5e-9211
ENSP00000476899DAP3PF10236.91.2e-6711
ENSP00000477265DAP3PF10236.91e-6012
ENSP00000477265DAP3PF10236.91e-6022
ENSP00000476840DAP3PF10236.96.4e-5411
ENSP00000476558DAP3PF10236.91.8e-3811
ENSP00000477139DAP3PF10236.94.7e-2612
ENSP00000477139DAP3PF10236.94.7e-2622
ENSP00000476624DAP3PF10236.93.6e-2311
ENSP00000476816DAP3PF10236.96.3e-1811
ENSP00000477453DAP3PF10236.91.8e-1712
ENSP00000477453DAP3PF10236.91.8e-1722
ENSP00000476291DAP3PF10236.95.5e-1711
ENSP00000476706DAP3PF10236.97e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000368336DAP3-2022089-ENSP00000357320398 (aa)-P51398
ENST00000343043DAP3-2011649XM_017002289ENSP00000341692398 (aa)XP_016857778P51398
ENST00000490249DAP3-220710-ENSP00000477139140 (aa)-V9GYW1
ENST00000479076DAP3-218735--- (aa)--
ENST00000471214DAP3-2121287-ENSP00000476899299 (aa)-V9GYL9
ENST00000479151DAP3-219725-ENSP00000477265242 (aa)-V9GZ03
ENST00000462978DAP3-206689--- (aa)--
ENST00000608852DAP3-226384-ENSP0000047702565 (aa)-V9GYR8
ENST00000476444DAP3-216679--- (aa)--
ENST00000471642DAP3-2141671XM_017002292ENSP00000476592357 (aa)XP_016857781P51398
ENST00000466384DAP3-210373--- (aa)--
ENST00000497433DAP3-223245--- (aa)--
ENST00000461479DAP3-204732--- (aa)--
ENST00000471523DAP3-213576--- (aa)--
ENST00000421487DAP3-2031470XM_005245480ENSP00000412605364 (aa)XP_005245537P51398
ENST00000470830DAP3-211439-ENSP00000476816119 (aa)-V9GYJ3
ENST00000463295DAP3-207607-ENSP00000477453106 (aa)-V9GZ61
ENST00000477394DAP3-217816-ENSP00000476558210 (aa)-V9GYA7
ENST00000497826DAP3-224807-ENSP00000476840266 (aa)-V9GYJ9
ENST00000475056DAP3-215682-ENSP00000476624115 (aa)-V9GYC9
ENST00000491777DAP3-221556-ENSP0000047670645 (aa)-V9GYF7
ENST00000462002DAP3-205716--- (aa)--
ENST00000465375DAP3-209729-ENSP00000476889113 (aa)-V9GYL4
ENST00000496863DAP3-222742--- (aa)--
ENST00000463575DAP3-208550-ENSP00000476291181 (aa)-V9GY11
ENST00000535183DAP3-2251894XM_005245481ENSP00000445003357 (aa)XP_005245538P51398
Gene Model
Click here to download ENSG00000132676's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000132676Child Development Disorders, Pervasive7.5862000E-006-
ENSG00000132676Child Development Disorders, Pervasive6.5283000E-006-
ENSG00000132676Child Development Disorders, Pervasive1.4546000E-005-
ENSG00000132676Child Development Disorders, Pervasive2.1813000E-005-
ENSG00000132676Inflammatory Bowel Diseases1E-626192919
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000132676rs4906081155713079?Inflammatory bowel disease26192919EFO_0003767
ENSG00000132676rs3481961155697170CBreast cancer29059683[0.027-0.055] unit increase0.0407EFO_0000305
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000132676's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000132676DAP310060.000ENSAPOG00000021719dap39755.769Acanthochromis_polyacanthus
ENSG00000132676DAP310088.889ENSAMEG00000000047DAP39984.635Ailuropoda_melanoleuca
ENSG00000132676DAP310057.778ENSACIG00000008298dap39658.268Amphilophus_citrinellus
ENSG00000132676DAP310057.778ENSAOCG00000017856dap39657.743Amphiprion_ocellaris
ENSG00000132676DAP310057.778ENSAPEG00000004308dap39657.743Amphiprion_percula
ENSG00000132676DAP310060.000ENSATEG00000023629dap39359.358Anabas_testudineus
ENSG00000132676DAP39768.116ENSACAG00000003347DAP310068.116Anolis_carolinensis
ENSG00000132676DAP310095.556ENSANAG00000033995DAP310095.787Aotus_nancymaae
ENSG00000132676DAP310062.222ENSACLG00000019804dap39958.629Astatotilapia_calliptera
ENSG00000132676DAP310066.667ENSAMXG00000016226dap310062.881Astyanax_mexicanus
ENSG00000132676DAP310088.889ENSBTAG00000001199DAP35787.688Bos_taurus
ENSG00000132676DAP39843.182WBGene00000933dap-39931.383Caenorhabditis_elegans
ENSG00000132676DAP310095.556ENSCJAG00000008125DAP310094.382Callithrix_jacchus
ENSG00000132676DAP310086.667ENSCAFG00000016941DAP310083.375Canis_familiaris
ENSG00000132676DAP310086.667ENSCAFG00020006662DAP310083.375Canis_lupus_dingo
ENSG00000132676DAP310088.889ENSCHIG00000017638DAP39988.191Capra_hircus
ENSG00000132676DAP39990.730ENSTSYG00000011490DAP39990.730Carlito_syrichta
ENSG00000132676DAP39463.121ENSCAPG00000008752-10069.849Cavia_aperea
ENSG00000132676DAP310088.889ENSCPOG00000030924DAP310085.894Cavia_porcellus
ENSG00000132676DAP39994.966ENSCCAG00000033532DAP39994.925Cebus_capucinus
ENSG00000132676DAP3100100.000ENSCATG00000037832DAP310097.135Cercocebus_atys
ENSG00000132676DAP310089.286ENSCLAG00000005599DAP39984.887Chinchilla_lanigera
ENSG00000132676DAP310096.656ENSCSAG00000002035DAP39896.677Chlorocebus_sabaeus
ENSG00000132676DAP310088.889ENSCHOG00000012200-10077.807Choloepus_hoffmanni
ENSG00000132676DAP37075.120ENSCHOG00000012345-10075.355Choloepus_hoffmanni
ENSG00000132676DAP39978.531ENSCPBG00000025787DAP310071.285Chrysemys_picta_bellii
ENSG00000132676DAP310034.857ENSCING00000003252-9535.714Ciona_intestinalis
ENSG00000132676DAP39636.182ENSCSAVG00000001772-9936.723Ciona_savignyi
ENSG00000132676DAP3100100.000ENSCANG00000041642DAP310084.422Colobus_angolensis_palliatus
ENSG00000132676DAP310082.143ENSCGRG00001022521Dap39980.990Cricetulus_griseus_chok1gshd
ENSG00000132676DAP310082.143ENSCGRG00000011980Dap39880.729Cricetulus_griseus_crigri
ENSG00000132676DAP39952.788ENSCSEG00000002386dap38757.817Cynoglossus_semilaevis
ENSG00000132676DAP310066.667ENSCVAG00000022528dap39657.552Cyprinodon_variegatus
ENSG00000132676DAP310068.889ENSDARG00000078500dap38960.784Danio_rerio
ENSG00000132676DAP310086.667ENSDNOG00000004559DAP39986.146Dasypus_novemcinctus
ENSG00000132676DAP310092.143ENSDORG00000003596Dap39985.390Dipodomys_ordii
ENSG00000132676DAP39439.589FBgn0034727mRpS298839.655Drosophila_melanogaster
ENSG00000132676DAP39884.091ENSETEG00000015833DAP39984.555Echinops_telfairi
ENSG00000132676DAP310060.000ENSEBUG00000007013-9453.695Eptatretus_burgeri
ENSG00000132676DAP39988.154ENSEASG00005019165DAP310088.154Equus_asinus_asinus
ENSG00000132676DAP39988.413ENSECAG00000016401DAP310088.413Equus_caballus
ENSG00000132676DAP39986.242ENSEEUG00000003537DAP39985.642Erinaceus_europaeus
ENSG00000132676DAP310064.444ENSELUG00000000477dap39958.942Esox_lucius
ENSG00000132676DAP310086.667ENSFCAG00000022787DAP310086.246Felis_catus
ENSG00000132676DAP39470.326ENSFALG00000002836DAP39965.063Ficedula_albicollis
ENSG00000132676DAP310086.429ENSFDAG00000007949DAP39984.171Fukomys_damarensis
ENSG00000132676DAP310064.444ENSFHEG00000021426dap39658.005Fundulus_heteroclitus
ENSG00000132676DAP310064.444ENSGMOG00000018965dap39758.491Gadus_morhua
ENSG00000132676DAP39670.468ENSGALG00000019796DAP310066.751Gallus_gallus
ENSG00000132676DAP310064.444ENSGAFG00000014742dap39659.318Gambusia_affinis
ENSG00000132676DAP310064.444ENSGACG00000011859dap310055.500Gasterosteus_aculeatus
ENSG00000132676DAP39775.216ENSGAGG00000022805DAP310071.285Gopherus_agassizii
ENSG00000132676DAP3100100.000ENSGGOG00000007618DAP310099.451Gorilla_gorilla
ENSG00000132676DAP310062.222ENSHBUG00000003658dap39557.107Haplochromis_burtoni
ENSG00000132676DAP310086.667ENSHGLG00000013978DAP39983.627Heterocephalus_glaber_female
ENSG00000132676DAP310086.667ENSHGLG00100013918DAP310084.635Heterocephalus_glaber_male
ENSG00000132676DAP310060.000ENSHCOG00000007242dap39657.480Hippocampus_comes
ENSG00000132676DAP310068.889ENSIPUG00000008508dap38964.507Ictalurus_punctatus
ENSG00000132676DAP310093.333ENSSTOG00000004627DAP39986.650Ictidomys_tridecemlineatus
ENSG00000132676DAP310087.143ENSJJAG00000010235Dap39981.612Jaculus_jaculus
ENSG00000132676DAP310064.444ENSKMAG00000001741dap39658.530Kryptolebias_marmoratus
ENSG00000132676DAP310060.000ENSLBEG00000026641dap39657.480Labrus_bergylta
ENSG00000132676DAP310054.190ENSLACG00000004658DAP310052.000Latimeria_chalumnae
ENSG00000132676DAP35052.632ENSLOCG00000006373dap36260.938Lepisosteus_oculatus
ENSG00000132676DAP310084.444ENSLAFG00000005200DAP39884.439Loxodonta_africana
ENSG00000132676DAP3100100.000ENSMFAG00000031112DAP310097.479Macaca_fascicularis
ENSG00000132676DAP3100100.000ENSMMUG00000018080DAP310098.571Macaca_mulatta
ENSG00000132676DAP310097.778ENSMNEG00000043408DAP310096.978Macaca_nemestrina
ENSG00000132676DAP3100100.000ENSMLEG00000035314DAP310097.479Mandrillus_leucophaeus
ENSG00000132676DAP310062.222ENSMZEG00005015864dap39958.629Maylandia_zebra
ENSG00000132676DAP39669.883ENSMGAG00000000884DAP39667.102Meleagris_gallopavo
ENSG00000132676DAP37087.081ENSMAUG00000018128-10087.204Mesocricetus_auratus
ENSG00000132676DAP310086.667ENSMICG00000031947DAP310080.353Microcebus_murinus
ENSG00000132676DAP310082.857ENSMOCG00000021693Dap39980.716Microtus_ochrogaster
ENSG00000132676DAP310064.444ENSMMOG00000003953dap39160.714Mola_mola
ENSG00000132676DAP310082.222ENSMODG00000017024DAP310077.834Monodelphis_domestica
ENSG00000132676DAP310062.222ENSMALG00000020939dap39659.843Monopterus_albus
ENSG00000132676DAP310081.429MGP_CAROLIEiJ_G0025182Dap310085.577Mus_caroli
ENSG00000132676DAP310080.714ENSMUSG00000068921Dap39985.577Mus_musculus
ENSG00000132676DAP310080.714MGP_PahariEiJ_G0026626Dap310080.769Mus_pahari
ENSG00000132676DAP310080.714MGP_SPRETEiJ_G0026125Dap310085.577Mus_spretus
ENSG00000132676DAP310084.444ENSMPUG00000005314DAP39475.439Mustela_putorius_furo
ENSG00000132676DAP310086.667ENSMLUG00000005848DAP39986.650Myotis_lucifugus
ENSG00000132676DAP310089.286ENSNGAG00000014173Dap310084.887Nannospalax_galili
ENSG00000132676DAP39956.877ENSNBRG00000003880dap39858.475Neolamprologus_brichardi
ENSG00000132676DAP3100100.000ENSNLEG00000012211DAP310091.960Nomascus_leucogenys
ENSG00000132676DAP310084.444ENSMEUG00000015501DAP310075.979Notamacropus_eugenii
ENSG00000132676DAP310082.222ENSOPRG00000015884DAP310079.112Ochotona_princeps
ENSG00000132676DAP310087.857ENSODEG00000010674DAP39684.334Octodon_degus
ENSG00000132676DAP310062.222ENSONIG00000006354dap39559.318Oreochromis_niloticus
ENSG00000132676DAP35061.667ENSOANG00000031925-9964.626Ornithorhynchus_anatinus
ENSG00000132676DAP39986.650ENSOCUG00000004785DAP39786.650Oryctolagus_cuniculus
ENSG00000132676DAP310062.222ENSORLG00000010053dap39658.268Oryzias_latipes
ENSG00000132676DAP310062.222ENSORLG00020009391dap39658.005Oryzias_latipes_hni
ENSG00000132676DAP310062.222ENSORLG00015015356dap39658.268Oryzias_latipes_hsok
ENSG00000132676DAP310060.000ENSOMEG00000008436dap39658.793Oryzias_melastigma
ENSG00000132676DAP310088.889ENSOGAG00000000845DAP39988.917Otolemur_garnettii
ENSG00000132676DAP310088.191ENSOARG00000004590DAP39988.191Ovis_aries
ENSG00000132676DAP3100100.000ENSPPAG00000030901DAP3100100.000Pan_paniscus
ENSG00000132676DAP310086.667ENSPPRG00000011800DAP310084.831Panthera_pardus
ENSG00000132676DAP310086.667ENSPTIG00000015443DAP310084.831Panthera_tigris_altaica
ENSG00000132676DAP3100100.000ENSPTRG00000001430DAP3100100.000Pan_troglodytes
ENSG00000132676DAP3100100.000ENSPANG00000001758DAP310096.978Papio_anubis
ENSG00000132676DAP310066.667ENSPKIG00000014766dap39955.072Paramormyrops_kingsleyae
ENSG00000132676DAP39872.521ENSPSIG00000005834DAP310069.521Pelodiscus_sinensis
ENSG00000132676DAP310060.000ENSPMGG00000007744dap39956.171Periophthalmus_magnuspinnatus
ENSG00000132676DAP310083.571ENSPEMG00000019185-9778.646Peromyscus_maniculatus_bairdii
ENSG00000132676DAP39973.791ENSPEMG00000023953-9774.677Peromyscus_maniculatus_bairdii
ENSG00000132676DAP310080.000ENSPCIG00000021692-10076.633Phascolarctos_cinereus
ENSG00000132676DAP310060.000ENSPFOG00000014273dap39756.010Poecilia_formosa
ENSG00000132676DAP310062.222ENSPLAG00000018996dap39756.522Poecilia_latipinna
ENSG00000132676DAP310060.000ENSPMEG00000023156dap39756.266Poecilia_mexicana
ENSG00000132676DAP310062.222ENSPREG00000017688dap310061.337Poecilia_reticulata
ENSG00000132676DAP3100100.000ENSPPYG00000000742DAP310098.492Pongo_abelii
ENSG00000132676DAP310088.889ENSPCAG00000007635DAP39985.139Procavia_capensis
ENSG00000132676DAP39890.085ENSPCOG00000027412DAP310091.117Propithecus_coquereli
ENSG00000132676DAP310062.222ENSPNYG00000004551dap39957.431Pundamilia_nyererei
ENSG00000132676DAP310066.667ENSPNAG00000018561dap39762.597Pygocentrus_nattereri
ENSG00000132676DAP39884.419ENSRNOG00000020373Dap39981.864Rattus_norvegicus
ENSG00000132676DAP3100100.000ENSRBIG00000040550DAP310096.703Rhinopithecus_bieti
ENSG00000132676DAP3100100.000ENSRROG00000041228DAP310097.479Rhinopithecus_roxellana
ENSG00000132676DAP39994.631ENSSBOG00000033972DAP39995.427Saimiri_boliviensis_boliviensis
ENSG00000132676DAP310086.667ENSSHAG00000011066DAP310076.884Sarcophilus_harrisii
ENSG00000132676DAP310062.222ENSSFOG00015021822dap39857.254Scleropages_formosus
ENSG00000132676DAP310060.000ENSSMAG00000016184dap38958.245Scophthalmus_maximus
ENSG00000132676DAP310064.444ENSSDUG00000006478dap310056.359Seriola_dumerili
ENSG00000132676DAP39968.000ENSSLDG00000015702dap38365.812Seriola_lalandi_dorsalis
ENSG00000132676DAP39483.214ENSSARG00000012468DAP39983.214Sorex_araneus
ENSG00000132676DAP310066.667ENSSPUG00000015891DAP310063.728Sphenodon_punctatus
ENSG00000132676DAP310057.778ENSSPAG00000022501dap39657.743Stegastes_partitus
ENSG00000132676DAP310088.889ENSSSCG00000006507DAP310089.333Sus_scrofa
ENSG00000132676DAP39077.670ENSTGUG00000017418DAP310070.890Taeniopygia_guttata
ENSG00000132676DAP310060.000ENSTRUG00000011013dap39061.236Takifugu_rubripes
ENSG00000132676DAP310062.222ENSTNIG00000018315dap310060.784Tetraodon_nigroviridis
ENSG00000132676DAP310071.111ENSTBEG00000000321-10057.792Tupaia_belangeri
ENSG00000132676DAP310086.667ENSTTRG00000013332DAP310088.773Tursiops_truncatus
ENSG00000132676DAP310088.889ENSUAMG00000013808DAP310084.635Ursus_americanus
ENSG00000132676DAP310088.889ENSUMAG00000019443DAP310084.383Ursus_maritimus
ENSG00000132676DAP310088.294ENSVPAG00000004571DAP310088.822Vicugna_pacos
ENSG00000132676DAP39979.866ENSVVUG00000004090DAP39982.432Vulpes_vulpes
ENSG00000132676DAP310064.444ENSXETG00000021441dap39555.462Xenopus_tropicalis
ENSG00000132676DAP310064.444ENSXCOG00000019528dap38557.637Xiphophorus_couchianus
ENSG00000132676DAP310064.444ENSXMAG00000016165dap39659.055Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0005515protein binding19103604.20563667.IPIFunction
GO:0005525GTP binding-IEAFunction
GO:0005654nucleoplasm-IDAComponent
GO:0005739mitochondrion20563667.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005763mitochondrial small ribosomal subunit21873635.IBAComponent
GO:0005763mitochondrial small ribosomal subunit-ISSComponent
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess
GO:0097190apoptotic signaling pathway7499268.TASProcess

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