EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000132740 (Gene tree)
Gene ID
3508
Gene Symbol
IGHMBP2
Alias
ZFAND7|SMUBP2|CATF1|SMARD1|HCSA|HMN6|CMT2S
Full Name
immunoglobulin mu DNA binding protein 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
36,761 bases
Position
chr11:68,903,842-68,940,602
Accession
5542
RBP type
canonical RBP
Summary
This gene encodes a helicase superfamily member that binds a specific DNA sequence from the immunoglobulin mu chain switch region. Mutations in this gene lead to spinal muscle atrophy with respiratory distress type 1. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000255078R3HPF01424.222.9e-1111
ENSP00000255078ResIIIPF04851.151e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
22965130The Ighmbp2 helicase structure reveals the molecular basis for disease-causing mutations in DMSA1.Nucleic Acids Res2012 NovLim SCdoi: 10.1093/nar/gks792
19299493Biochemical and genetic evidence for a role of IGHMBP2 in the translational machinery.Hum Mol Genet2009 Jun 15de Planell-Saguer Mdoi: 10.1093/hmg/ddp134
15069027Transgenic rescue of neurogenic atrophy in the nmd mouse reveals a role for Ighmbp2 in dilated cardiomyopathy.Hum Mol Genet2004 Jun 1Maddatu TP-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000539224IGHMBP2-205785-ENSP00000440465192 (aa)-F5GX64
ENST00000255078IGHMBP2-2013961XM_005273974ENSP00000255078993 (aa)XP_005274031P38935
ENST00000545475IGHMBP2-211562--- (aa)--
ENST00000544521IGHMBP2-2081683--- (aa)--
ENST00000568742IGHMBP2-212540--- (aa)--
ENST00000544541IGHMBP2-209479-ENSP0000044334329 (aa)-F5H5K3
ENST00000543739IGHMBP2-2072846--- (aa)--
ENST00000537458IGHMBP2-203813--- (aa)--
ENST00000536803IGHMBP2-202444--- (aa)--
ENST00000541229IGHMBP2-206549--- (aa)--
ENST00000545146IGHMBP2-210477-ENSP0000045636691 (aa)-H3BRR1
ENST00000539064IGHMBP2-2042346--- (aa)--
Gene Model
Click here to download ENSG00000132740's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000132740Body Mass Index7.31568000924866E-617903300
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000132740rs5572666521168914320AHeel bone mineral density28869591[0.3-0.57] unit increase0.435354EFO_0009270
ENSG00000132740rs5572666521168914320AHeel bone mineral density28869591[0.31-0.67] unit increase0.490722EFO_0009270
ENSG00000132740rs5572666521168914320?Heel bone mineral density30048462[0.3-0.48] unit increase0.390123EFO_0009270
ENSG00000132740rs6532641168932307?Body mass index30595370EFO_0004340
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000132740's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000132740IGHMBP29958.824ENSAPOG00000009399ighmbp29959.222Acanthochromis_polyacanthus
ENSG00000132740IGHMBP210096.552ENSAMEG00000008568IGHMBP210081.419Ailuropoda_melanoleuca
ENSG00000132740IGHMBP29957.624ENSACIG00000004670ighmbp29957.791Amphilophus_citrinellus
ENSG00000132740IGHMBP29958.870ENSAOCG00000019390ighmbp29959.267Amphiprion_ocellaris
ENSG00000132740IGHMBP29958.969ENSAPEG00000021713ighmbp29959.366Amphiprion_percula
ENSG00000132740IGHMBP29958.597ENSATEG00000010246ighmbp29658.696Anabas_testudineus
ENSG00000132740IGHMBP29667.112ENSAPLG00000003251IGHMBP29967.041Anas_platyrhynchos
ENSG00000132740IGHMBP29962.079ENSACAG00000013702IGHMBP29961.947Anolis_carolinensis
ENSG00000132740IGHMBP210093.152ENSANAG00000027309IGHMBP210093.152Aotus_nancymaae
ENSG00000132740IGHMBP29958.084ENSACLG00000014140ighmbp29958.103Astatotilapia_calliptera
ENSG00000132740IGHMBP29957.354ENSAMXG00000000503ighmbp29957.651Astyanax_mexicanus
ENSG00000132740IGHMBP210089.655ENSBTAG00000022185IGHMBP29979.037Bos_taurus
ENSG00000132740IGHMBP210096.552ENSCJAG00000015887IGHMBP29391.171Callithrix_jacchus
ENSG00000132740IGHMBP210096.552ENSCAFG00000010745IGHMBP29981.337Canis_familiaris
ENSG00000132740IGHMBP26976.771ENSCAFG00020015362IGHMBP28976.891Canis_lupus_dingo
ENSG00000132740IGHMBP210089.655ENSCHIG00000011703IGHMBP29979.037Capra_hircus
ENSG00000132740IGHMBP29880.061ENSCAPG00000001471IGHMBP29980.264Cavia_aperea
ENSG00000132740IGHMBP29981.470ENSCPOG00000007063IGHMBP29481.764Cavia_porcellus
ENSG00000132740IGHMBP210096.552ENSCCAG00000027106IGHMBP210092.145Cebus_capucinus
ENSG00000132740IGHMBP2100100.000ENSCATG00000031229IGHMBP210084.970Cercocebus_atys
ENSG00000132740IGHMBP210089.655ENSCLAG00000015500IGHMBP210081.263Chinchilla_lanigera
ENSG00000132740IGHMBP2100100.000ENSCSAG00000009185IGHMBP210094.094Chlorocebus_sabaeus
ENSG00000132740IGHMBP29368.235ENSCPBG00000008799IGHMBP29966.773Chrysemys_picta_bellii
ENSG00000132740IGHMBP29944.623ENSCING00000005102zf(an1/a20like)-29944.886Ciona_intestinalis
ENSG00000132740IGHMBP29946.766ENSCSAVG00000006222-9946.766Ciona_savignyi
ENSG00000132740IGHMBP210096.552ENSCANG00000043714IGHMBP210093.480Colobus_angolensis_palliatus
ENSG00000132740IGHMBP210082.759ENSCGRG00001019126Ighmbp210078.166Cricetulus_griseus_chok1gshd
ENSG00000132740IGHMBP210082.759ENSCGRG00000009642Ighmbp210078.166Cricetulus_griseus_crigri
ENSG00000132740IGHMBP29957.257ENSCSEG00000007513ighmbp29957.172Cynoglossus_semilaevis
ENSG00000132740IGHMBP29760.144ENSCVAG00000007876ighmbp29960.041Cyprinodon_variegatus
ENSG00000132740IGHMBP29956.385ENSDARG00000069274ighmbp29956.863Danio_rerio
ENSG00000132740IGHMBP210093.103ENSDNOG00000002334IGHMBP29977.845Dasypus_novemcinctus
ENSG00000132740IGHMBP29771.014ENSDORG00000026350Ighmbp210071.014Dipodomys_ordii
ENSG00000132740IGHMBP29966.095ENSETEG00000003178IGHMBP29966.095Echinops_telfairi
ENSG00000132740IGHMBP29060.976ENSEBUG00000010471ighmbp29951.320Eptatretus_burgeri
ENSG00000132740IGHMBP210089.655ENSEASG00005007735IGHMBP29982.530Equus_asinus_asinus
ENSG00000132740IGHMBP210089.655ENSECAG00000019360IGHMBP29882.555Equus_caballus
ENSG00000132740IGHMBP29266.667ENSELUG00000023450ighmbp29956.690Esox_lucius
ENSG00000132740IGHMBP210096.552ENSFCAG00000010879IGHMBP29978.806Felis_catus
ENSG00000132740IGHMBP29864.045ENSFALG00000011604IGHMBP29963.015Ficedula_albicollis
ENSG00000132740IGHMBP210089.655ENSFDAG00000005011IGHMBP29289.094Fukomys_damarensis
ENSG00000132740IGHMBP29959.263ENSFHEG00000021211ighmbp29959.363Fundulus_heteroclitus
ENSG00000132740IGHMBP29957.114ENSGMOG00000017553ighmbp29957.313Gadus_morhua
ENSG00000132740IGHMBP29665.102ENSGALG00000004328IGHMBP29965.252Gallus_gallus
ENSG00000132740IGHMBP29959.960ENSGAFG00000020770ighmbp29959.821Gambusia_affinis
ENSG00000132740IGHMBP29958.374ENSGACG00000005293ighmbp29958.668Gasterosteus_aculeatus
ENSG00000132740IGHMBP29966.934ENSGAGG00000020312IGHMBP29266.833Gopherus_agassizii
ENSG00000132740IGHMBP2100100.000ENSGGOG00000012131IGHMBP210097.292Gorilla_gorilla
ENSG00000132740IGHMBP29958.026ENSHBUG00000018318ighmbp29958.061Haplochromis_burtoni
ENSG00000132740IGHMBP29888.764ENSHGLG00000006468IGHMBP210081.964Heterocephalus_glaber_female
ENSG00000132740IGHMBP29888.764ENSHGLG00100009290IGHMBP210081.864Heterocephalus_glaber_male
ENSG00000132740IGHMBP29959.018ENSHCOG00000018786ighmbp29959.940Hippocampus_comes
ENSG00000132740IGHMBP29955.193ENSIPUG00000023036ighmbp29955.567Ictalurus_punctatus
ENSG00000132740IGHMBP210089.655ENSSTOG00000003792IGHMBP29976.815Ictidomys_tridecemlineatus
ENSG00000132740IGHMBP210089.655ENSJJAG00000022964Ighmbp29978.837Jaculus_jaculus
ENSG00000132740IGHMBP29959.182ENSKMAG00000020284ighmbp29959.642Kryptolebias_marmoratus
ENSG00000132740IGHMBP29363.529ENSLBEG00000014501ighmbp29956.543Labrus_bergylta
ENSG00000132740IGHMBP29767.045ENSLACG00000018792IGHMBP29959.882Latimeria_chalumnae
ENSG00000132740IGHMBP29363.529ENSLOCG00000001512ighmbp29956.773Lepisosteus_oculatus
ENSG00000132740IGHMBP27675.098ENSLAFG00000022445IGHMBP29975.360Loxodonta_africana
ENSG00000132740IGHMBP2100100.000ENSMFAG00000043909IGHMBP210094.483Macaca_fascicularis
ENSG00000132740IGHMBP2100100.000ENSMNEG00000043511IGHMBP210090.772Macaca_nemestrina
ENSG00000132740IGHMBP2100100.000ENSMLEG00000043529IGHMBP210094.784Mandrillus_leucophaeus
ENSG00000132740IGHMBP29957.800ENSMAMG00000005532ighmbp29957.942Mastacembelus_armatus
ENSG00000132740IGHMBP29958.084ENSMZEG00005000665ighmbp29958.103Maylandia_zebra
ENSG00000132740IGHMBP29666.391ENSMGAG00000002792IGHMBP210065.476Meleagris_gallopavo
ENSG00000132740IGHMBP210079.310ENSMAUG00000019893Ighmbp210078.066Mesocricetus_auratus
ENSG00000132740IGHMBP2100100.000ENSMICG00000043944IGHMBP29991.983Microcebus_murinus
ENSG00000132740IGHMBP210082.759ENSMOCG00000018939Ighmbp210078.586Microtus_ochrogaster
ENSG00000132740IGHMBP29957.889ENSMMOG00000001234ighmbp29958.275Mola_mola
ENSG00000132740IGHMBP29965.507ENSMODG00000004040IGHMBP28865.545Monodelphis_domestica
ENSG00000132740IGHMBP29956.759ENSMALG00000006457ighmbp29956.719Monopterus_albus
ENSG00000132740IGHMBP210086.207MGP_CAROLIEiJ_G0022463Ighmbp210077.168Mus_caroli
ENSG00000132740IGHMBP210082.759ENSMUSG00000024831Ighmbp210076.436Mus_musculus
ENSG00000132740IGHMBP210082.759MGP_PahariEiJ_G0013960Ighmbp210077.368Mus_pahari
ENSG00000132740IGHMBP210082.759MGP_SPRETEiJ_G0014700Ighmbp29982.418Mus_spretus
ENSG00000132740IGHMBP29778.947ENSMPUG00000004439IGHMBP29979.197Mustela_putorius_furo
ENSG00000132740IGHMBP29883.146ENSNGAG00000006566Ighmbp210075.773Nannospalax_galili
ENSG00000132740IGHMBP29361.176ENSNBRG00000014911ighmbp29957.983Neolamprologus_brichardi
ENSG00000132740IGHMBP2100100.000ENSNLEG00000006609IGHMBP210090.744Nomascus_leucogenys
ENSG00000132740IGHMBP26462.441ENSOPRG00000011904-10062.441Ochotona_princeps
ENSG00000132740IGHMBP210086.667ENSODEG00000017354IGHMBP210080.681Octodon_degus
ENSG00000132740IGHMBP29958.333ENSONIG00000015506ighmbp29957.952Oreochromis_niloticus
ENSG00000132740IGHMBP29957.666ENSORLG00000006561ighmbp29958.576Oryzias_latipes
ENSG00000132740IGHMBP29958.216ENSORLG00020008462ighmbp29958.216Oryzias_latipes_hni
ENSG00000132740IGHMBP29956.466ENSORLG00015001563ighmbp29957.243Oryzias_latipes_hsok
ENSG00000132740IGHMBP29958.655ENSOMEG00000019296ighmbp29958.969Oryzias_melastigma
ENSG00000132740IGHMBP2100100.000ENSOGAG00000011671IGHMBP210081.062Otolemur_garnettii
ENSG00000132740IGHMBP29773.554ENSOARG00000016959IGHMBP29973.891Ovis_aries
ENSG00000132740IGHMBP2100100.000ENSPPAG00000027355IGHMBP210098.195Pan_paniscus
ENSG00000132740IGHMBP210096.552ENSPPRG00000024194IGHMBP29979.880Panthera_pardus
ENSG00000132740IGHMBP2100100.000ENSPTRG00000003989IGHMBP210098.094Pan_troglodytes
ENSG00000132740IGHMBP2100100.000ENSPANG00000023650IGHMBP210090.772Papio_anubis
ENSG00000132740IGHMBP29957.715ENSPKIG00000019306ighmbp29957.715Paramormyrops_kingsleyae
ENSG00000132740IGHMBP29167.810ENSPSIG00000015808IGHMBP210067.810Pelodiscus_sinensis
ENSG00000132740IGHMBP210082.759ENSPEMG00000017775Ighmbp29978.078Peromyscus_maniculatus_bairdii
ENSG00000132740IGHMBP29771.338ENSPCIG00000011064IGHMBP29965.092Phascolarctos_cinereus
ENSG00000132740IGHMBP29958.748ENSPFOG00000010607ighmbp29959.082Poecilia_formosa
ENSG00000132740IGHMBP29959.403ENSPLAG00000003917ighmbp29959.502Poecilia_latipinna
ENSG00000132740IGHMBP29959.033ENSPMEG00000021063ighmbp29959.366Poecilia_mexicana
ENSG00000132740IGHMBP29959.462ENSPREG00000011223ighmbp29959.761Poecilia_reticulata
ENSG00000132740IGHMBP26696.364ENSPPYG00000002965-10096.364Pongo_abelii
ENSG00000132740IGHMBP29789.286ENSPCAG00000003490-6089.286Procavia_capensis
ENSG00000132740IGHMBP2100100.000ENSPCOG00000018759IGHMBP210082.748Propithecus_coquereli
ENSG00000132740IGHMBP28573.191ENSPVAG00000012921IGHMBP210073.072Pteropus_vampyrus
ENSG00000132740IGHMBP29958.367ENSPNYG00000015003ighmbp29958.103Pundamilia_nyererei
ENSG00000132740IGHMBP29263.095ENSPNAG00000013815ighmbp29955.773Pygocentrus_nattereri
ENSG00000132740IGHMBP210079.310ENSRNOG00000013456Ighmbp29977.423Rattus_norvegicus
ENSG00000132740IGHMBP2100100.000ENSRBIG00000044249IGHMBP210093.681Rhinopithecus_bieti
ENSG00000132740IGHMBP2100100.000ENSRROG00000045646IGHMBP210094.082Rhinopithecus_roxellana
ENSG00000132740IGHMBP26435.725YKL017CHCS19935.484Saccharomyces_cerevisiae
ENSG00000132740IGHMBP210093.103ENSSBOG00000021342IGHMBP210087.714Saimiri_boliviensis_boliviensis
ENSG00000132740IGHMBP27661.844ENSSHAG00000001585-9962.740Sarcophilus_harrisii
ENSG00000132740IGHMBP29956.995ENSSFOG00015016074ighmbp29156.995Scleropages_formosus
ENSG00000132740IGHMBP29958.030ENSSMAG00000013687ighmbp29958.112Scophthalmus_maximus
ENSG00000132740IGHMBP29957.742ENSSDUG00000013150ighmbp29958.474Seriola_dumerili
ENSG00000132740IGHMBP29957.585ENSSLDG00000023119ighmbp29958.449Seriola_lalandi_dorsalis
ENSG00000132740IGHMBP26461.905ENSSPUG00000008810IGHMBP29961.702Sphenodon_punctatus
ENSG00000132740IGHMBP29959.046ENSSPAG00000011541ighmbp29959.524Stegastes_partitus
ENSG00000132740IGHMBP210093.103ENSSSCG00000012878IGHMBP29976.660Sus_scrofa
ENSG00000132740IGHMBP29664.560ENSTGUG00000006705-9964.784Taeniopygia_guttata
ENSG00000132740IGHMBP29956.932ENSTRUG00000003491ighmbp29956.932Takifugu_rubripes
ENSG00000132740IGHMBP29957.328ENSTNIG00000016069ighmbp29957.642Tetraodon_nigroviridis
ENSG00000132740IGHMBP2100100.000ENSTBEG00000017260IGHMBP29478.470Tupaia_belangeri
ENSG00000132740IGHMBP210089.655ENSTTRG00000013636IGHMBP28885.232Tursiops_truncatus
ENSG00000132740IGHMBP210096.552ENSUAMG00000024817IGHMBP210081.518Ursus_americanus
ENSG00000132740IGHMBP29977.789ENSUMAG00000018347IGHMBP29879.029Ursus_maritimus
ENSG00000132740IGHMBP210093.103ENSVVUG00000004811IGHMBP29981.511Vulpes_vulpes
ENSG00000132740IGHMBP29162.229ENSXETG00000031258IGHMBP210061.613Xenopus_tropicalis
ENSG00000132740IGHMBP29959.064ENSXCOG00000003758ighmbp29959.761Xiphophorus_couchianus
ENSG00000132740IGHMBP29959.861ENSXMAG00000003705ighmbp29959.861Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding19299493.IDAFunction
GO:0003677DNA binding19158098.IDAFunction
GO:0003678DNA helicase activity8349627.TASFunction
GO:0003697single-stranded DNA binding8349627.8493094.TASFunction
GO:0003723RNA binding19158098.IDAFunction
GO:0005515protein binding19299493.IPIFunction
GO:0005524ATP binding19158098.IDAFunction
GO:0005634nucleus19299493.IDAComponent
GO:0005737cytoplasm19299493.IDAComponent
GO:0006260DNA replication8493094.TASProcess
GO:0006281DNA repair8493094.TASProcess
GO:0006310DNA recombination8349627.TASProcess
GO:0006412translation19299493.NASProcess
GO:0008094DNA-dependent ATPase activity19158098.IDAFunction
GO:0008134transcription factor binding19299493.IPIFunction
GO:0008186RNA-dependent ATPase activity19158098.IDAFunction
GO:0008270zinc ion binding-IEAFunction
GO:0016020membrane19946888.HDAComponent
GO:0030424axon-ISSComponent
GO:0030426growth cone-ISSComponent
GO:0032508DNA duplex unwinding-IEAProcess
GO:0032575ATP-dependent 5'-3' RNA helicase activity19158098.IDAFunction
GO:0043022ribosome binding19158098.IDAFunction
GO:0043141ATP-dependent 5'-3' DNA helicase activity19158098.IDAFunction
GO:0051260protein homooligomerization19299493.IDAProcess
GO:1990904ribonucleoprotein complex-ISSComponent

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