EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000134077 (Gene tree)
Gene ID
25917
Gene Symbol
THUMPD3
Alias
DKFZP434F091
Full Name
THUMP domain containing 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
23,950 bases
Position
chr3:9,362,842-9,386,791
Accession
24493
RBP type
canonical RBP
Summary
(THUMP Domain Containing 3) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include RNA binding and methyltransferase activity. An important paralog of this gene is THUMPD2.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000396359THUMPPF02926.175.7e-1211
ENSP00000339532THUMPPF02926.175.8e-1211
ENSP00000395893THUMPPF02926.175.8e-1211
ENSP00000424064THUMPPF02926.175.8e-1211
ENSP00000412199THUMPPF02926.171.4e-1111
ENSP00000339532UPF0020PF01170.184.1e-4911
ENSP00000395893UPF0020PF01170.184.1e-4911
ENSP00000424064UPF0020PF01170.184.1e-4911
ENSP00000412199UPF0020PF01170.181.8e-2711
ENSP00000396359UPF0020PF01170.182.9e-1711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000461636THUMPD3-207670--- (aa)--
ENST00000441127THUMPD3-205708-ENSP00000396359232 (aa)-H7C0R6
ENST00000464045THUMPD3-208601--- (aa)--
ENST00000417036THUMPD3-203730-ENSP0000040296840 (aa)-C9JP31
ENST00000416603THUMPD3-202807-ENSP00000412199269 (aa)-H7C3J3
ENST00000484006THUMPD3-209559--- (aa)--
ENST00000452837THUMPD3-2062877XM_017006113ENSP00000395893507 (aa)XP_016861602Q9BV44
ENST00000345094THUMPD3-2013961XM_005265021ENSP00000339532507 (aa)XP_005265078Q9BV44
ENST00000515662THUMPD3-2102390-ENSP00000424064507 (aa)-Q9BV44
ENST00000419437THUMPD3-204704-ENSP00000411126123 (aa)-C9J9V2
Gene Model
Click here to download ENSG00000134077's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000134077Platelet Function Tests3.9900000E-006-
ENSG00000134077Blood Pressure2.6590675E-007-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000134077's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000134077THUMPD39159.611ENSAPOG00000015836thumpd39259.611Acanthochromis_polyacanthus
ENSG00000134077THUMPD39984.921ENSAMEG00000011321THUMPD310084.921Ailuropoda_melanoleuca
ENSG00000134077THUMPD39458.368ENSACIG00000020096thumpd39358.368Amphilophus_citrinellus
ENSG00000134077THUMPD39159.740ENSAOCG00000004399thumpd39058.495Amphiprion_ocellaris
ENSG00000134077THUMPD39060.307ENSAPEG00000016740thumpd39058.458Amphiprion_percula
ENSG00000134077THUMPD39458.368ENSATEG00000005345thumpd39356.875Anabas_testudineus
ENSG00000134077THUMPD39766.667ENSAPLG00000003598THUMPD39970.277Anas_platyrhynchos
ENSG00000134077THUMPD39171.681ENSACAG00000014974THUMPD39862.136Anolis_carolinensis
ENSG00000134077THUMPD39996.970ENSANAG00000002365THUMPD310096.421Aotus_nancymaae
ENSG00000134077THUMPD39259.698ENSACLG00000023333thumpd39059.698Astatotilapia_calliptera
ENSG00000134077THUMPD35335.246ENSACLG00000025840thumpd27232.222Astatotilapia_calliptera
ENSG00000134077THUMPD36366.234ENSACLG00000013504-7366.234Astatotilapia_calliptera
ENSG00000134077THUMPD39158.531ENSAMXG00000015683thumpd39558.315Astyanax_mexicanus
ENSG00000134077THUMPD310086.290ENSBTAG00000003112THUMPD39984.000Bos_taurus
ENSG00000134077THUMPD38835.189WBGene00010846M04B2.29835.189Caenorhabditis_elegans
ENSG00000134077THUMPD310095.266ENSCJAG00000015949THUMPD310095.266Callithrix_jacchus
ENSG00000134077THUMPD39886.784ENSCAFG00000008060-9487.013Canis_familiaris
ENSG00000134077THUMPD39986.310ENSCAFG00000005499THUMPD310086.310Canis_familiaris
ENSG00000134077THUMPD39986.310ENSCAFG00020008895-10086.310Canis_lupus_dingo
ENSG00000134077THUMPD39886.784ENSCAFG00020025887-9886.085Canis_lupus_dingo
ENSG00000134077THUMPD310087.097ENSCHIG00000024037THUMPD39984.600Capra_hircus
ENSG00000134077THUMPD310091.057ENSTSYG00000000159THUMPD310091.849Carlito_syrichta
ENSG00000134077THUMPD39368.421ENSCAPG00000017486THUMPD310056.496Cavia_aperea
ENSG00000134077THUMPD310082.400ENSCPOG00000033287THUMPD310082.970Cavia_porcellus
ENSG00000134077THUMPD39997.403ENSCCAG00000027067-10096.421Cebus_capucinus
ENSG00000134077THUMPD310091.870ENSCCAG00000021429-10088.072Cebus_capucinus
ENSG00000134077THUMPD310097.561ENSCATG00000040999THUMPD310098.211Cercocebus_atys
ENSG00000134077THUMPD35435.433ENSCATG00000012396THUMPD25031.696Cercocebus_atys
ENSG00000134077THUMPD39984.752ENSCLAG00000000690THUMPD310084.752Chinchilla_lanigera
ENSG00000134077THUMPD35435.433ENSCSAG00000012431THUMPD25032.743Chlorocebus_sabaeus
ENSG00000134077THUMPD39997.813ENSCSAG00000010753THUMPD310097.813Chlorocebus_sabaeus
ENSG00000134077THUMPD39584.167ENSCHOG00000012851THUMPD38665.584Choloepus_hoffmanni
ENSG00000134077THUMPD310067.200ENSCPBG00000014771THUMPD310066.602Chrysemys_picta_bellii
ENSG00000134077THUMPD36047.297ENSCING00000003270-5243.137Ciona_intestinalis
ENSG00000134077THUMPD38942.070ENSCSAVG00000008668-9641.850Ciona_savignyi
ENSG00000134077THUMPD310096.748ENSCANG00000031901THUMPD310097.217Colobus_angolensis_palliatus
ENSG00000134077THUMPD39982.341ENSCGRG00001024117Thumpd310082.341Cricetulus_griseus_chok1gshd
ENSG00000134077THUMPD39982.341ENSCGRG00000018116Thumpd310082.341Cricetulus_griseus_crigri
ENSG00000134077THUMPD39058.150ENSCSEG00000002546thumpd39058.150Cynoglossus_semilaevis
ENSG00000134077THUMPD36032.624ENSCVAG00000007942THUMPD25030.342Cyprinodon_variegatus
ENSG00000134077THUMPD39059.912ENSCVAG00000001019thumpd39257.380Cyprinodon_variegatus
ENSG00000134077THUMPD39261.638ENSDARG00000059634thumpd39660.981Danio_rerio
ENSG00000134077THUMPD310087.097ENSDNOG00000047668THUMPD310085.986Dasypus_novemcinctus
ENSG00000134077THUMPD39885.526ENSDORG00000003257Thumpd39984.095Dipodomys_ordii
ENSG00000134077THUMPD39881.148ENSETEG00000020239-6680.178Echinops_telfairi
ENSG00000134077THUMPD38653.759ENSEBUG00000004221thumpd39553.759Eptatretus_burgeri
ENSG00000134077THUMPD35432.540ENSEBUG00000010906THUMPD26033.014Eptatretus_burgeri
ENSG00000134077THUMPD310085.484ENSEASG00005013327THUMPD310085.516Equus_asinus_asinus
ENSG00000134077THUMPD39987.500ENSECAG00000002016THUMPD310087.500Equus_caballus
ENSG00000134077THUMPD39986.806ENSEEUG00000014696THUMPD39977.712Erinaceus_europaeus
ENSG00000134077THUMPD38067.014ENSELUG00000018246thumpd36967.014Esox_lucius
ENSG00000134077THUMPD310086.811ENSFCAG00000006171THUMPD310086.811Felis_catus
ENSG00000134077THUMPD36683.553ENSFALG00000013631THUMPD39164.944Ficedula_albicollis
ENSG00000134077THUMPD39984.356ENSFDAG00000014825THUMPD310084.356Fukomys_damarensis
ENSG00000134077THUMPD39258.547ENSFHEG00000006006thumpd39158.333Fundulus_heteroclitus
ENSG00000134077THUMPD38173.874ENSGMOG00000007923thumpd39156.587Gadus_morhua
ENSG00000134077THUMPD39859.109ENSGALG00000044813THUMPD39565.336Gallus_gallus
ENSG00000134077THUMPD36334.247ENSGALG00000009119THUMPD25232.328Gallus_gallus
ENSG00000134077THUMPD39757.171ENSGAFG00000021645thumpd39756.064Gambusia_affinis
ENSG00000134077THUMPD39357.895ENSGACG00000000930thumpd39757.053Gasterosteus_aculeatus
ENSG00000134077THUMPD310066.400ENSGAGG00000022750THUMPD310066.795Gopherus_agassizii
ENSG00000134077THUMPD36532.000ENSGAGG00000001325THUMPD25432.000Gopherus_agassizii
ENSG00000134077THUMPD3100100.000ENSGGOG00000000604THUMPD310099.606Gorilla_gorilla
ENSG00000134077THUMPD39259.698ENSHBUG00000013405thumpd39059.698Haplochromis_burtoni
ENSG00000134077THUMPD39983.168ENSHGLG00000016200THUMPD310083.168Heterocephalus_glaber_female
ENSG00000134077THUMPD310076.000ENSHGLG00100000505-9971.901Heterocephalus_glaber_male
ENSG00000134077THUMPD39983.366ENSHGLG00100017321-10083.366Heterocephalus_glaber_male
ENSG00000134077THUMPD39257.021ENSHCOG00000004871thumpd39556.000Hippocampus_comes
ENSG00000134077THUMPD39058.913ENSIPUG00000019415THUMPD39058.478Ictalurus_punctatus
ENSG00000134077THUMPD39987.302ENSSTOG00000003973THUMPD310087.302Ictidomys_tridecemlineatus
ENSG00000134077THUMPD310080.645ENSJJAG00000017751Thumpd39875.351Jaculus_jaculus
ENSG00000134077THUMPD39356.965ENSKMAG00000021025thumpd38856.965Kryptolebias_marmoratus
ENSG00000134077THUMPD39159.355ENSLBEG00000012252thumpd39257.620Labrus_bergylta
ENSG00000134077THUMPD39162.896ENSLACG00000018604THUMPD39062.664Latimeria_chalumnae
ENSG00000134077THUMPD38961.028ENSLOCG00000009800thumpd39561.028Lepisosteus_oculatus
ENSG00000134077THUMPD310086.290ENSLAFG00000005103THUMPD39986.879Loxodonta_africana
ENSG00000134077THUMPD310097.561ENSMFAG00000044884THUMPD310097.813Macaca_fascicularis
ENSG00000134077THUMPD310097.561ENSMMUG00000017307THUMPD310097.813Macaca_mulatta
ENSG00000134077THUMPD310097.561ENSMNEG00000030529THUMPD310097.813Macaca_nemestrina
ENSG00000134077THUMPD310097.561ENSMLEG00000032943THUMPD310098.012Mandrillus_leucophaeus
ENSG00000134077THUMPD39358.246ENSMAMG00000023934thumpd39257.620Mastacembelus_armatus
ENSG00000134077THUMPD39259.698ENSMZEG00005010623thumpd39059.698Maylandia_zebra
ENSG00000134077THUMPD39861.404ENSMGAG00000010182THUMPD310067.327Meleagris_gallopavo
ENSG00000134077THUMPD39983.532ENSMAUG00000012250Thumpd310083.532Mesocricetus_auratus
ENSG00000134077THUMPD310093.496ENSMICG00000010095THUMPD39689.243Microcebus_murinus
ENSG00000134077THUMPD39981.584ENSMOCG00000020148Thumpd310081.584Microtus_ochrogaster
ENSG00000134077THUMPD39356.458ENSMMOG00000021791thumpd39655.672Mola_mola
ENSG00000134077THUMPD39870.530ENSMODG00000004715-9970.530Monodelphis_domestica
ENSG00000134077THUMPD39257.749ENSMALG00000017316thumpd39557.113Monopterus_albus
ENSG00000134077THUMPD310073.387MGP_CAROLIEiJ_G0028714-6576.115Mus_caroli
ENSG00000134077THUMPD39980.517ENSMUSG00000030264Thumpd39980.517Mus_musculus
ENSG00000134077THUMPD39782.301MGP_PahariEiJ_G0022465Thumpd310079.960Mus_pahari
ENSG00000134077THUMPD39980.556MGP_SPRETEiJ_G0029742Thumpd310080.556Mus_spretus
ENSG00000134077THUMPD310085.484ENSMPUG00000017066-9985.913Mustela_putorius_furo
ENSG00000134077THUMPD39785.333ENSMPUG00000005219-9978.244Mustela_putorius_furo
ENSG00000134077THUMPD39886.784ENSMLUG00000008538THUMPD39784.970Myotis_lucifugus
ENSG00000134077THUMPD39671.186ENSNGAG00000001549-9967.600Nannospalax_galili
ENSG00000134077THUMPD39886.344ENSNGAG00000021014-9984.800Nannospalax_galili
ENSG00000134077THUMPD39259.698ENSNBRG00000004886thumpd39159.275Neolamprologus_brichardi
ENSG00000134077THUMPD310098.374ENSNLEG00000003863THUMPD310099.205Nomascus_leucogenys
ENSG00000134077THUMPD39769.604ENSMEUG00000009819THUMPD39973.270Notamacropus_eugenii
ENSG00000134077THUMPD39880.617ENSOPRG00000002020THUMPD39981.710Ochotona_princeps
ENSG00000134077THUMPD39882.379ENSODEG00000018242THUMPD310083.380Octodon_degus
ENSG00000134077THUMPD39159.477ENSONIG00000018977thumpd39157.356Oreochromis_niloticus
ENSG00000134077THUMPD37573.988ENSOANG00000014481THUMPD39965.035Ornithorhynchus_anatinus
ENSG00000134077THUMPD39983.992ENSOCUG00000010921THUMPD39983.992Oryctolagus_cuniculus
ENSG00000134077THUMPD39357.505ENSORLG00000000676thumpd39356.660Oryzias_latipes
ENSG00000134077THUMPD39357.928ENSORLG00020007509thumpd39357.082Oryzias_latipes_hni
ENSG00000134077THUMPD36037.143ENSORLG00020018792thumpd25235.622Oryzias_latipes_hni
ENSG00000134077THUMPD39357.928ENSORLG00015003615thumpd39357.082Oryzias_latipes_hsok
ENSG00000134077THUMPD39356.992ENSOMEG00000014115thumpd39058.206Oryzias_melastigma
ENSG00000134077THUMPD39889.427ENSOGAG00000017111THUMPD310090.049Otolemur_garnettii
ENSG00000134077THUMPD310087.097ENSOARG00000007139THUMPD39784.369Ovis_aries
ENSG00000134077THUMPD310099.606ENSPPAG00000025852THUMPD310099.606Pan_paniscus
ENSG00000134077THUMPD310086.811ENSPPRG00000008071THUMPD310086.811Panthera_pardus
ENSG00000134077THUMPD310086.290ENSPTIG00000017923THUMPD310086.706Panthera_tigris_altaica
ENSG00000134077THUMPD3100100.000ENSPTRG00000014585THUMPD310099.606Pan_troglodytes
ENSG00000134077THUMPD310097.561ENSPANG00000016253THUMPD39997.614Papio_anubis
ENSG00000134077THUMPD39161.688ENSPKIG00000014009thumpd39261.688Paramormyrops_kingsleyae
ENSG00000134077THUMPD310068.000ENSPSIG00000007370THUMPD310066.214Pelodiscus_sinensis
ENSG00000134077THUMPD39159.307ENSPMGG00000017563thumpd39259.307Periophthalmus_magnuspinnatus
ENSG00000134077THUMPD39982.341ENSPEMG00000022411Thumpd310082.341Peromyscus_maniculatus_bairdii
ENSG00000134077THUMPD39252.401ENSPMAG00000001291thumpd310051.820Petromyzon_marinus
ENSG00000134077THUMPD310071.200ENSPCIG00000002049THUMPD310071.790Phascolarctos_cinereus
ENSG00000134077THUMPD39757.927ENSPFOG00000002318thumpd39557.927Poecilia_formosa
ENSG00000134077THUMPD39757.927ENSPLAG00000014804thumpd39557.927Poecilia_latipinna
ENSG00000134077THUMPD36134.932ENSPMEG00000009573-5031.034Poecilia_mexicana
ENSG00000134077THUMPD39757.927ENSPMEG00000000582thumpd39557.927Poecilia_mexicana
ENSG00000134077THUMPD39756.375ENSPREG00000009176thumpd39756.375Poecilia_reticulata
ENSG00000134077THUMPD36032.857ENSPREG00000001603THUMPD25231.466Poecilia_reticulata
ENSG00000134077THUMPD310068.173ENSPPYG00000017616-10067.780Pongo_abelii
ENSG00000134077THUMPD310099.187ENSPPYG00000029461THUMPD310099.404Pongo_abelii
ENSG00000134077THUMPD35436.220ENSPPYG00000012470THUMPD25032.143Pongo_abelii
ENSG00000134077THUMPD39785.841ENSPCAG00000015398THUMPD310085.579Procavia_capensis
ENSG00000134077THUMPD310095.935ENSPCOG00000018095-10086.680Propithecus_coquereli
ENSG00000134077THUMPD310091.870ENSPCOG00000023618-9988.128Propithecus_coquereli
ENSG00000134077THUMPD39887.225ENSPVAG00000008721THUMPD39986.922Pteropus_vampyrus
ENSG00000134077THUMPD39259.698ENSPNYG00000006918thumpd39059.698Pundamilia_nyererei
ENSG00000134077THUMPD38959.692ENSPNAG00000014936thumpd39059.471Pygocentrus_nattereri
ENSG00000134077THUMPD39980.357ENSRNOG00000006941Thumpd310080.357Rattus_norvegicus
ENSG00000134077THUMPD310097.561ENSRBIG00000035954THUMPD310097.813Rhinopithecus_bieti
ENSG00000134077THUMPD310097.561ENSRROG00000035734THUMPD310097.614Rhinopithecus_roxellana
ENSG00000134077THUMPD310095.122ENSSBOG00000023567THUMPD310095.427Saimiri_boliviensis_boliviensis
ENSG00000134077THUMPD39971.176ENSSHAG00000014467THUMPD39971.316Sarcophilus_harrisii
ENSG00000134077THUMPD39261.620ENSSFOG00015019210thumpd39261.620Scleropages_formosus
ENSG00000134077THUMPD39258.422ENSSMAG00000000609thumpd39457.265Scophthalmus_maximus
ENSG00000134077THUMPD39456.701ENSSDUG00000012179thumpd39656.701Seriola_dumerili
ENSG00000134077THUMPD39456.875ENSSLDG00000022028thumpd39456.875Seriola_lalandi_dorsalis
ENSG00000134077THUMPD310081.600ENSSARG00000002239THUMPD38681.098Sorex_araneus
ENSG00000134077THUMPD310064.228ENSSPUG00000017461THUMPD39967.129Sphenodon_punctatus
ENSG00000134077THUMPD37031.765ENSSPUG00000006316THUMPD25431.429Sphenodon_punctatus
ENSG00000134077THUMPD39158.621ENSSPAG00000008345thumpd38857.974Stegastes_partitus
ENSG00000134077THUMPD310085.484ENSSSCG00000011542THUMPD39985.200Sus_scrofa
ENSG00000134077THUMPD38868.071ENSTGUG00000010440THUMPD310068.071Taeniopygia_guttata
ENSG00000134077THUMPD38176.471ENSTRUG00000004420thumpd39250.980Takifugu_rubripes
ENSG00000134077THUMPD39458.526ENSTNIG00000014627thumpd39856.842Tetraodon_nigroviridis
ENSG00000134077THUMPD39887.665ENSTBEG00000003450THUMPD39982.480Tupaia_belangeri
ENSG00000134077THUMPD310088.710ENSTTRG00000009694THUMPD39986.200Tursiops_truncatus
ENSG00000134077THUMPD310086.290ENSUAMG00000009412THUMPD310086.508Ursus_americanus
ENSG00000134077THUMPD310087.097ENSUMAG00000019241THUMPD310083.532Ursus_maritimus
ENSG00000134077THUMPD39886.344ENSVPAG00000002855THUMPD310085.372Vicugna_pacos
ENSG00000134077THUMPD39887.665ENSVVUG00000025278THUMPD310086.508Vulpes_vulpes
ENSG00000134077THUMPD310058.537ENSXETG00000001447thumpd39559.796Xenopus_tropicalis
ENSG00000134077THUMPD39856.859ENSXCOG00000000159thumpd39756.875Xiphophorus_couchianus
ENSG00000134077THUMPD39757.171ENSXMAG00000001423thumpd39755.952Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0005730nucleolus-IDAComponent
GO:0005829cytosol-IDAComponent
GO:0016423tRNA (guanine) methyltransferase activity21873635.IBAFunction
GO:0030488tRNA methylation21873635.IBAProcess

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