EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000134453 (Gene tree)
Gene ID
84991
Gene Symbol
RBM17
Alias
SPF45|MGC14439
Full Name
RNA binding motif protein 17
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
28,474 bases
Position
chr10:6,088,986-6,117,459
Accession
16944
RBP type
canonical RBP
Summary
This gene encodes an RNA binding protein. The encoded protein is part of the spliceosome complex and functions in the second catalytic step of mRNA splicing. Alternatively spliced transcript variants have been described. Related pseudogenes exist on chromosomes 9 and 15. [provided by RefSeq, Mar 2009]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000369218RRM_1PF00076.220.0003111
ENSP00000388638RRM_1PF00076.220.0003111
ENSP00000406024G-patchPF01585.238.7e-1311
ENSP00000369218G-patchPF01585.232e-1211
ENSP00000388638G-patchPF01585.232e-1211
ENSP00000395448G-patchPF01585.233.3e-1111

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
24858692Structural basis of the phosphorylation dependent complex formation of neurodegenerative disease protein Ataxin-1 and RBM17.Biochem Biophys Res Commun2014 Jul 11Kim Edoi: 10.1016/j.bbrc.2014.05.063
29552202Downregulation of RNA binding motif protein 17 expression inhibits proliferation of hypopharyngeal carcinoma FaDu cells.Oncol Lett2018 AprHan Ydoi: 10.3892/ol.2018.8012
30332651RBM17 Interacts with U2SURP and CHERP to Regulate Expression and Splicing of RNA-Processing Proteins.Cell Rep2018 Oct 16De Maio Adoi: 10.1016/j.celrep.2018.09.041.
29410288Identification of key microRNAs, transcription factors and genes associated with congenital obstructive nephropathy in a mouse model of megabladder.Gene2018 Apr 15Xin Gdoi: 10.1016/j.gene.2018.01.063
20236180Holliday junction-binding activity of human SPF45.Genes Cells2010 Apr 1Horikoshi Ndoi: 10.1111/j.1365-2443.2010.01383.x
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000446108RBM17-2053751-ENSP00000388638401 (aa)-Q96I25
ENST00000467080RBM17-208837--- (aa)--
ENST00000437845RBM17-204833-ENSP00000395448240 (aa)-Q5W012
ENST00000432931RBM17-203805-ENSP00000408214221 (aa)-Q5W010
ENST00000379888RBM17-2012755-ENSP00000369218401 (aa)-Q96I25
ENST00000465906RBM17-207914--- (aa)--
ENST00000481147RBM17-211611--- (aa)--
ENST00000476706RBM17-210927--- (aa)--
ENST00000467214RBM17-209389--- (aa)--
ENST00000418631RBM17-202792-ENSP00000402303212 (aa)-Q5W011
ENST00000447032RBM17-206676-ENSP00000406024225 (aa)-H0Y6J6
ENST00000496762RBM17-2121585--- (aa)--
Gene Model
Click here to download ENSG00000134453's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000134453Cholesterol, HDL8.401e-005-
ENSG00000134453Cholesterol, HDL2.323e-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000134453rs12778662106107074TMidgestational cytokine/chemokine levels (maternal genetic effect)30134952[0.43-0.87] unit increase0.65EFO_0007650|EFO_0007964|EFO_0004747|EFO_0005939
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000134453's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000134453RBM179982.878ENSAPOG00000007101rbm179982.878Acanthochromis_polyacanthus
ENSG00000134453RBM1710099.528ENSAMEG00000002107RBM1710099.252Ailuropoda_melanoleuca
ENSG00000134453RBM1710078.922ENSACIG00000006251rbm1710078.922Amphilophus_citrinellus
ENSG00000134453RBM1710082.801ENSAOCG00000014892rbm1710082.801Amphiprion_ocellaris
ENSG00000134453RBM1710082.801ENSAPEG00000022779rbm1710082.801Amphiprion_percula
ENSG00000134453RBM1710078.774ENSATEG00000004406rbm1710078.774Anabas_testudineus
ENSG00000134453RBM1710095.771ENSAPLG00000004190RBM1710095.771Anas_platyrhynchos
ENSG00000134453RBM179688.655ENSACAG00000005418RBM179990.270Anolis_carolinensis
ENSG00000134453RBM1710099.528ENSANAG00000030127RBM1710099.501Aotus_nancymaae
ENSG00000134453RBM1710085.323ENSANAG00000019330-9794.915Aotus_nancymaae
ENSG00000134453RBM1710078.765ENSACLG00000003928rbm1710078.765Astatotilapia_calliptera
ENSG00000134453RBM1710078.241ENSAMXG00000005853rbm1710079.294Astyanax_mexicanus
ENSG00000134453RBM1710097.642ENSBTAG00000011094-10097.506Bos_taurus
ENSG00000134453RBM1710099.057ENSBTAG00000021951RBM1710099.002Bos_taurus
ENSG00000134453RBM178036.667WBGene00010233F58B3.79132.817Caenorhabditis_elegans
ENSG00000134453RBM1710099.528ENSCJAG00000020573RBM1710099.501Callithrix_jacchus
ENSG00000134453RBM1710099.528ENSCAFG00000005206RBM1710099.252Canis_familiaris
ENSG00000134453RBM1710094.763ENSCAFG00020005420RBM1710094.763Canis_lupus_dingo
ENSG00000134453RBM1710098.113ENSCHIG00000019921-10096.509Capra_hircus
ENSG00000134453RBM1710099.057ENSCHIG00000023204-10099.002Capra_hircus
ENSG00000134453RBM1710099.057ENSTSYG00000001165RBM1710097.531Carlito_syrichta
ENSG00000134453RBM179781.466ENSCAPG00000006275RBM1710079.235Cavia_aperea
ENSG00000134453RBM1710094.118ENSCPOG00000005679RBM1710094.118Cavia_porcellus
ENSG00000134453RBM1710099.528ENSCCAG00000018655RBM1710099.501Cebus_capucinus
ENSG00000134453RBM17100100.000ENSCATG00000041566RBM17100100.000Cercocebus_atys
ENSG00000134453RBM1710099.057ENSCLAG00000012195RBM179998.272Chinchilla_lanigera
ENSG00000134453RBM17100100.000ENSCSAG00000013564RBM17100100.000Chlorocebus_sabaeus
ENSG00000134453RBM178696.907ENSCHOG00000005131RBM1710079.459Choloepus_hoffmanni
ENSG00000134453RBM1710094.776ENSCPBG00000019836RBM1710094.776Chrysemys_picta_bellii
ENSG00000134453RBM1710046.301ENSCSAVG00000008782-10046.618Ciona_savignyi
ENSG00000134453RBM1710099.751ENSCANG00000030987RBM1710099.751Colobus_angolensis_palliatus
ENSG00000134453RBM179885.714ENSCANG00000023715-10085.714Colobus_angolensis_palliatus
ENSG00000134453RBM1710099.528ENSCGRG00001013842Rbm1710098.519Cricetulus_griseus_chok1gshd
ENSG00000134453RBM1710076.060ENSCGRG00001009256-10074.074Cricetulus_griseus_chok1gshd
ENSG00000134453RBM1710099.528ENSCGRG00000006907Rbm1710098.519Cricetulus_griseus_crigri
ENSG00000134453RBM1710079.310ENSCSEG00000018164rbm1710080.049Cynoglossus_semilaevis
ENSG00000134453RBM1710074.505ENSCVAG00000002476rbm1710075.854Cyprinodon_variegatus
ENSG00000134453RBM1710078.118ENSDARG00000031346rbm1710078.118Danio_rerio
ENSG00000134453RBM1710099.528ENSDNOG00000035920RBM1710099.002Dasypus_novemcinctus
ENSG00000134453RBM179936.203FBgn0086683Spf459936.476Drosophila_melanogaster
ENSG00000134453RBM1710075.312ENSETEG00000006642RBM1710075.312Echinops_telfairi
ENSG00000134453RBM176370.732ENSEBUG00000010253rbm178570.732Eptatretus_burgeri
ENSG00000134453RBM179794.850ENSEASG00005009236-10095.946Equus_asinus_asinus
ENSG00000134453RBM1710093.103ENSEASG00005019205-10093.103Equus_asinus_asinus
ENSG00000134453RBM1710082.883ENSECAG00000008939RBM1710085.536Equus_caballus
ENSG00000134453RBM1710096.226ENSECAG00000001379-10088.529Equus_caballus
ENSG00000134453RBM179796.567ENSEEUG00000013077RBM1710080.814Erinaceus_europaeus
ENSG00000134453RBM1710077.083ENSELUG00000006440rbm1710077.083Esox_lucius
ENSG00000134453RBM1710099.528ENSFCAG00000031988RBM1710099.252Felis_catus
ENSG00000134453RBM1710094.763ENSFALG00000001790RBM1710094.763Ficedula_albicollis
ENSG00000134453RBM1710099.057ENSFDAG00000007470RBM1710098.272Fukomys_damarensis
ENSG00000134453RBM1710078.133ENSFHEG00000001266rbm1710077.778Fundulus_heteroclitus
ENSG00000134453RBM179975.297ENSGMOG00000008438rbm1710075.297Gadus_morhua
ENSG00000134453RBM1710095.761ENSGALG00000006332RBM1710095.761Gallus_gallus
ENSG00000134453RBM1710080.344ENSGAFG00000019879rbm1710081.081Gambusia_affinis
ENSG00000134453RBM179981.034ENSGACG00000019174rbm179981.034Gasterosteus_aculeatus
ENSG00000134453RBM1710094.776ENSGAGG00000019906RBM1710094.776Gopherus_agassizii
ENSG00000134453RBM1710083.292ENSHBUG00000016624rbm1710083.292Haplochromis_burtoni
ENSG00000134453RBM1710099.057ENSHGLG00000011580RBM1710098.272Heterocephalus_glaber_female
ENSG00000134453RBM1710075.556ENSHGLG00100010556-10073.827Heterocephalus_glaber_male
ENSG00000134453RBM1710099.057ENSHGLG00100010460RBM1710098.272Heterocephalus_glaber_male
ENSG00000134453RBM179977.804ENSHCOG00000010865rbm1710077.804Hippocampus_comes
ENSG00000134453RBM1710077.518ENSIPUG00000007699Rbm1710077.518Ictalurus_punctatus
ENSG00000134453RBM1710099.528ENSSTOG00000013591RBM1710098.765Ictidomys_tridecemlineatus
ENSG00000134453RBM179787.931ENSJJAG00000000993-10070.471Jaculus_jaculus
ENSG00000134453RBM1710099.528ENSJJAG00000022886Rbm1710098.519Jaculus_jaculus
ENSG00000134453RBM1710078.624ENSKMAG00000021400rbm1710079.361Kryptolebias_marmoratus
ENSG00000134453RBM1710082.064ENSLBEG00000000881rbm1710078.774Labrus_bergylta
ENSG00000134453RBM179969.176ENSLACG00000017297RBM179969.412Latimeria_chalumnae
ENSG00000134453RBM1710086.667ENSLOCG00000015659rbm1710086.667Lepisosteus_oculatus
ENSG00000134453RBM1710099.528ENSLAFG00000011629RBM1710098.034Loxodonta_africana
ENSG00000134453RBM17100100.000ENSMFAG00000035521RBM17100100.000Macaca_fascicularis
ENSG00000134453RBM17100100.000ENSMMUG00000015152RBM17100100.000Macaca_mulatta
ENSG00000134453RBM17100100.000ENSMNEG00000017264RBM17100100.000Macaca_nemestrina
ENSG00000134453RBM17100100.000ENSMLEG00000029340RBM17100100.000Mandrillus_leucophaeus
ENSG00000134453RBM1710078.066ENSMAMG00000000387rbm1710078.066Mastacembelus_armatus
ENSG00000134453RBM1710080.332ENSMZEG00005015179rbm1710080.332Maylandia_zebra
ENSG00000134453RBM1710093.873ENSMGAG00000003981RBM1710093.873Meleagris_gallopavo
ENSG00000134453RBM1710099.528ENSMAUG00000019247Rbm1710098.519Mesocricetus_auratus
ENSG00000134453RBM1710099.057ENSMICG00000003976-10097.778Microcebus_murinus
ENSG00000134453RBM1710092.019ENSMICG00000041489-10090.220Microcebus_murinus
ENSG00000134453RBM1710099.528ENSMOCG00000011847Rbm1710098.519Microtus_ochrogaster
ENSG00000134453RBM179677.941ENSMOCG00000014517-9980.267Microtus_ochrogaster
ENSG00000134453RBM1710075.182ENSMMOG00000010264rbm1710073.966Mola_mola
ENSG00000134453RBM1710098.005ENSMODG00000016648RBM1710098.005Monodelphis_domestica
ENSG00000134453RBM1710077.882ENSMALG00000010597rbm1710077.941Monopterus_albus
ENSG00000134453RBM1710099.057MGP_CAROLIEiJ_G0023173Rbm1710098.272Mus_caroli
ENSG00000134453RBM1710099.057ENSMUSG00000037197Rbm1710098.272Mus_musculus
ENSG00000134453RBM1710098.585MGP_PahariEiJ_G0019233Rbm1710097.778Mus_pahari
ENSG00000134453RBM1710099.057MGP_SPRETEiJ_G0024091Rbm1710098.272Mus_spretus
ENSG00000134453RBM1710099.528ENSMPUG00000016359RBM179798.555Mustela_putorius_furo
ENSG00000134453RBM1710099.057ENSMLUG00000002302-10096.305Myotis_lucifugus
ENSG00000134453RBM1710093.516ENSMLUG00000025709-10093.516Myotis_lucifugus
ENSG00000134453RBM1710069.576ENSNGAG00000000663-10069.154Nannospalax_galili
ENSG00000134453RBM1710099.528ENSNGAG00000000741Rbm1710098.519Nannospalax_galili
ENSG00000134453RBM1710077.531ENSNBRG00000018148rbm1710077.531Neolamprologus_brichardi
ENSG00000134453RBM17100100.000ENSNLEG00000033350RBM17100100.000Nomascus_leucogenys
ENSG00000134453RBM1710098.113ENSMEUG00000011347RBM1710092.020Notamacropus_eugenii
ENSG00000134453RBM1710090.094ENSOPRG00000002993RBM1710086.035Ochotona_princeps
ENSG00000134453RBM1710098.585ENSODEG00000004393RBM1710097.537Octodon_degus
ENSG00000134453RBM179776.824ENSODEG00000007286-9974.809Octodon_degus
ENSG00000134453RBM1710083.292ENSONIG00000011838rbm1710083.292Oreochromis_niloticus
ENSG00000134453RBM1710096.698ENSOANG00000015455RBM1710096.526Ornithorhynchus_anatinus
ENSG00000134453RBM1710079.717ENSORLG00000028798rbm1710080.344Oryzias_latipes
ENSG00000134453RBM1710079.717ENSORLG00020004593rbm1710078.519Oryzias_latipes_hni
ENSG00000134453RBM1710083.292ENSORLG00015000033rbm1710083.292Oryzias_latipes_hsok
ENSG00000134453RBM1710079.481ENSOMEG00000012060rbm1710088.050Oryzias_melastigma
ENSG00000134453RBM1710098.585ENSOGAG00000015687RBM1710098.025Otolemur_garnettii
ENSG00000134453RBM1710099.057ENSOARG00000012975RBM1710099.002Ovis_aries
ENSG00000134453RBM17100100.000ENSPPAG00000032347RBM17100100.000Pan_paniscus
ENSG00000134453RBM1710099.528ENSPPRG00000010706RBM1710099.252Panthera_pardus
ENSG00000134453RBM1710099.528ENSPTIG00000007596RBM1710099.252Panthera_tigris_altaica
ENSG00000134453RBM17100100.000ENSPTRG00000002265RBM17100100.000Pan_troglodytes
ENSG00000134453RBM17100100.000ENSPANG00000023425RBM17100100.000Papio_anubis
ENSG00000134453RBM1710080.235ENSPKIG00000025526rbm1710080.047Paramormyrops_kingsleyae
ENSG00000134453RBM1710077.700ENSPKIG00000005048-10077.700Paramormyrops_kingsleyae
ENSG00000134453RBM1710093.868ENSPSIG00000012332RBM1710093.333Pelodiscus_sinensis
ENSG00000134453RBM1710077.778ENSPMGG00000007980rbm1710076.699Periophthalmus_magnuspinnatus
ENSG00000134453RBM1710099.528ENSPEMG00000014320Rbm1710098.519Peromyscus_maniculatus_bairdii
ENSG00000134453RBM1710097.767ENSPCIG00000019260-10097.767Phascolarctos_cinereus
ENSG00000134453RBM1710077.830ENSPFOG00000013271rbm1710078.538Poecilia_formosa
ENSG00000134453RBM1710078.066ENSPLAG00000004455rbm1710078.774Poecilia_latipinna
ENSG00000134453RBM1710081.818ENSPMEG00000014864rbm1710081.818Poecilia_mexicana
ENSG00000134453RBM1710077.150ENSPREG00000015589rbm1710077.830Poecilia_reticulata
ENSG00000134453RBM1710074.324ENSPPYG00000019881-10071.930Pongo_abelii
ENSG00000134453RBM1710073.874ENSPPYG00000019042-10071.207Pongo_abelii
ENSG00000134453RBM17100100.000ENSPPYG00000002067RBM17100100.000Pongo_abelii
ENSG00000134453RBM1710099.528ENSPCAG00000016879RBM1710091.272Procavia_capensis
ENSG00000134453RBM1710099.057ENSPCOG00000027881RBM1710099.002Propithecus_coquereli
ENSG00000134453RBM1710093.213ENSPVAG00000015499RBM1710086.534Pteropus_vampyrus
ENSG00000134453RBM1710076.368ENSPNYG00000015274rbm1710076.368Pundamilia_nyererei
ENSG00000134453RBM1710079.294ENSPNAG00000030046rbm1710079.294Pygocentrus_nattereri
ENSG00000134453RBM1710099.528ENSRNOG00000018767Rbm1710098.519Rattus_norvegicus
ENSG00000134453RBM17100100.000ENSRBIG00000043727RBM17100100.000Rhinopithecus_bieti
ENSG00000134453RBM17100100.000ENSRROG00000044142RBM17100100.000Rhinopithecus_roxellana
ENSG00000134453RBM1710088.308ENSSBOG00000023653-10088.308Saimiri_boliviensis_boliviensis
ENSG00000134453RBM1710099.528ENSSBOG00000031661-10099.252Saimiri_boliviensis_boliviensis
ENSG00000134453RBM1710098.005ENSSHAG00000012480-10098.005Sarcophilus_harrisii
ENSG00000134453RBM1710082.555ENSSFOG00015009892rbm1710082.555Scleropages_formosus
ENSG00000134453RBM1710078.713ENSSMAG00000012368rbm1710077.861Scophthalmus_maximus
ENSG00000134453RBM1710081.840ENSSDUG00000015015rbm1710081.840Seriola_dumerili
ENSG00000134453RBM1710081.840ENSSLDG00000014486rbm1710081.840Seriola_lalandi_dorsalis
ENSG00000134453RBM178672.680ENSSARG00000001792-10078.390Sorex_araneus
ENSG00000134453RBM1710094.340ENSSPUG00000001036RBM179994.763Sphenodon_punctatus
ENSG00000134453RBM1710082.555ENSSPAG00000002338rbm1710082.555Stegastes_partitus
ENSG00000134453RBM1710098.753ENSSSCG00000011134RBM1710098.753Sus_scrofa
ENSG00000134453RBM1710094.340ENSTGUG00000002013RBM1710094.074Taeniopygia_guttata
ENSG00000134453RBM1710082.512ENSTRUG00000010698rbm1710082.512Takifugu_rubripes
ENSG00000134453RBM1710082.396ENSTNIG00000006892rbm1710082.396Tetraodon_nigroviridis
ENSG00000134453RBM1710086.321ENSTBEG00000014686RBM1710077.556Tupaia_belangeri
ENSG00000134453RBM179698.701ENSTTRG00000001344RBM1710098.889Tursiops_truncatus
ENSG00000134453RBM1710094.763ENSUAMG00000009499RBM1710094.763Ursus_americanus
ENSG00000134453RBM1710099.057ENSUMAG00000012237RBM1710099.002Ursus_maritimus
ENSG00000134453RBM1710084.788ENSVPAG00000005497RBM1710084.788Vicugna_pacos
ENSG00000134453RBM1710099.528ENSVVUG00000006780RBM179798.555Vulpes_vulpes
ENSG00000134453RBM179985.821ENSXETG00000018123rbm1710085.821Xenopus_tropicalis
ENSG00000134453RBM1710080.344ENSXMAG00000008674rbm1710081.081Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000380alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000380alternative mRNA splicing, via spliceosome17589525.IMPProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding16189514.17577209.17589525.18337722.21516116.22365833.25416956.26420826.29021621.IPIFunction
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0006281DNA repair21873635.IBAProcess

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