EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000134684 (Gene tree)
Gene ID
8565
Gene Symbol
YARS
Alias
YTS|YRS|tyrRS
Full Name
tyrosyl-tRNA synthetase
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
42,917 bases
Position
chr1:32,775,237-32,818,153
Accession
12840
RBP type
canonical RBP
Summary
Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Because of their central role in linking amino acids with nucleotide triplets contained in tRNAs, aminoacyl-tRNA synthetases are thought to be among the first proteins that appeared in evolution. Tyrosyl-tRNA synthetase belongs to the class I tRNA synthetase family. Cytokine activities have also been observed for the human tyrosyl-tRNA synthetase, after it is split into two parts, an N-terminal fragment that harbors the catalytic site and a C-terminal fragment found only in the mammalian enzyme. The N-terminal fragment is an interleukin-8-like cytokine, whereas the released C-terminal fragment is an EMAP II-like cytokine. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000362576tRNA_bindPF01588.208.5e-3311
ENSP00000484192tRNA-synt_1bPF00579.257e-7511
ENSP00000362576tRNA-synt_1bPF00579.251.6e-7411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
9867837A new heat shock protein that binds nucleic acids.J Biol Chem1999 Jan 1Korber P-
19000653A phage RNA-binding protein binds to a non-cognate structured RNA and stabilizes its core structure.Biochem Biophys Res Commun2009 Jan 9Xie MHdoi: 10.1016/j.bbrc.2008.10.160
15694342A tyrosyl-tRNA synthetase adapted to function in group I intron splicing by acquiring a new RNA binding surface.Mol Cell2005 Feb 4Paukstelis PJ-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000470377YARS-204782--- (aa)--
ENST00000490826YARS-2092178--- (aa)--
ENST00000478828YARS-2061044--- (aa)--
ENST00000481895YARS-2071018--- (aa)--
ENST00000466052YARS-202728--- (aa)--
ENST00000469100YARS-2032247--- (aa)--
ENST00000472692YARS-205773--- (aa)--
ENST00000373477YARS-2013238XM_011542347ENSP00000362576528 (aa)XP_011540649P54577
ENST00000616261YARS-2101167-ENSP00000484192388 (aa)-A0A0C4DGZ5
ENST00000487404YARS-2082197--- (aa)--
Gene Model
Click here to download ENSG00000134684's gene model file
Pathways
Pathway IDPathway NameSource
hsa00970Aminoacyl-tRNA biosynthesisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000134684's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000134684YARS10078.236ENSAPOG00000020788yars10078.424Acanthochromis_polyacanthus
ENSG00000134684YARS10095.455ENSAMEG00000007476YARS10095.455Ailuropoda_melanoleuca
ENSG00000134684YARS10079.356ENSACIG00000017504yars10079.356Amphilophus_citrinellus
ENSG00000134684YARS10078.839ENSAOCG00000009987yars10079.213Amphiprion_ocellaris
ENSG00000134684YARS10078.839ENSAPEG00000001273yars10079.213Amphiprion_percula
ENSG00000134684YARS10078.839ENSATEG00000005301yars10079.213Anabas_testudineus
ENSG00000134684YARS9881.660ENSAPLG00000005739YARS9881.660Anas_platyrhynchos
ENSG00000134684YARS9985.009ENSACAG00000003568YARS9985.009Anolis_carolinensis
ENSG00000134684YARS10099.053ENSANAG00000034533YARS10099.053Aotus_nancymaae
ENSG00000134684YARS10078.030ENSACLG00000004618yars10078.030Astatotilapia_calliptera
ENSG00000134684YARS10080.755ENSAMXG00000010993yars10080.755Astyanax_mexicanus
ENSG00000134684YARS10095.076ENSBTAG00000018065YARS10095.076Bos_taurus
ENSG00000134684YARS10098.674ENSCJAG00000001037YARS10098.674Callithrix_jacchus
ENSG00000134684YARS10095.644ENSCAFG00000010481YARS9495.644Canis_familiaris
ENSG00000134684YARS10095.274ENSCAFG00020025379YARS10095.274Canis_lupus_dingo
ENSG00000134684YARS10095.265ENSCHIG00000014340YARS10095.265Capra_hircus
ENSG00000134684YARS10096.591ENSTSYG00000005019YARS10096.591Carlito_syrichta
ENSG00000134684YARS9067.865ENSCAPG00000008627YARS10067.865Cavia_aperea
ENSG00000134684YARS10095.265ENSCPOG00000009614YARS9495.265Cavia_porcellus
ENSG00000134684YARS10098.674ENSCCAG00000036757YARS9898.674Cebus_capucinus
ENSG00000134684YARS10099.053ENSCATG00000044394YARS10099.053Cercocebus_atys
ENSG00000134684YARS10095.265ENSCLAG00000008977YARS9395.265Chinchilla_lanigera
ENSG00000134684YARS10099.053ENSCSAG00000001062YARS10099.053Chlorocebus_sabaeus
ENSG00000134684YARS9685.658ENSCHOG00000003939YARS10085.462Choloepus_hoffmanni
ENSG00000134684YARS10086.174ENSCPBG00000010998YARS10086.174Chrysemys_picta_bellii
ENSG00000134684YARS9970.265ENSCING00000005113-9971.132Ciona_intestinalis
ENSG00000134684YARS9374.656ENSCSAVG00000003706-9967.429Ciona_savignyi
ENSG00000134684YARS10098.485ENSCANG00000038285YARS10098.485Colobus_angolensis_palliatus
ENSG00000134684YARS10096.402ENSCGRG00001010863Yars10092.235Cricetulus_griseus_chok1gshd
ENSG00000134684YARS10096.402ENSCGRG00000007526Yars9496.402Cricetulus_griseus_crigri
ENSG00000134684YARS10078.261ENSCSEG00000009643yars10078.450Cynoglossus_semilaevis
ENSG00000134684YARS10080.000ENSCVAG00000016583yars10080.000Cyprinodon_variegatus
ENSG00000134684YARS10081.853ENSDARG00000035913yars10090.805Danio_rerio
ENSG00000134684YARS10096.023ENSDNOG00000000536YARS10096.023Dasypus_novemcinctus
ENSG00000134684YARS10095.076ENSDORG00000011871Yars10095.076Dipodomys_ordii
ENSG00000134684YARS9768.616FBgn0027080TyrRS9768.616Drosophila_melanogaster
ENSG00000134684YARS8796.032ENSETEG00000000215YARS8796.032Echinops_telfairi
ENSG00000134684YARS9869.211ENSEBUG00000004750yars9966.034Eptatretus_burgeri
ENSG00000134684YARS9994.857ENSEASG00005011762YARS9394.886Equus_asinus_asinus
ENSG00000134684YARS9994.857ENSECAG00000010015YARS6894.886Equus_caballus
ENSG00000134684YARS8873.684ENSEEUG00000005992-8873.684Erinaceus_europaeus
ENSG00000134684YARS10080.114ENSELUG00000017171yars10080.114Esox_lucius
ENSG00000134684YARS8696.930ENSFCAG00000000704YARS10096.930Felis_catus
ENSG00000134684YARS9988.100ENSFALG00000000592YARS9387.689Ficedula_albicollis
ENSG00000134684YARS10094.318ENSFDAG00000006620YARS9494.318Fukomys_damarensis
ENSG00000134684YARS10079.135ENSFHEG00000022444yars10079.511Fundulus_heteroclitus
ENSG00000134684YARS9676.621ENSGMOG00000006555yars10076.621Gadus_morhua
ENSG00000134684YARS10087.311ENSGALG00000003563YARS9887.311Gallus_gallus
ENSG00000134684YARS10078.154ENSGACG00000008516yars10078.719Gasterosteus_aculeatus
ENSG00000134684YARS10085.795ENSGAGG00000024290YARS10085.795Gopherus_agassizii
ENSG00000134684YARS10099.432ENSGGOG00000014013YARS10099.432Gorilla_gorilla
ENSG00000134684YARS10076.822ENSHBUG00000018909yars10077.009Haplochromis_burtoni
ENSG00000134684YARS10094.129ENSHGLG00000013843YARS9494.129Heterocephalus_glaber_female
ENSG00000134684YARS7092.098ENSHGLG00100020546-9992.098Heterocephalus_glaber_male
ENSG00000134684YARS10092.803ENSHGLG00100002785-10092.803Heterocephalus_glaber_male
ENSG00000134684YARS10075.370ENSHCOG00000006672yars10075.786Hippocampus_comes
ENSG00000134684YARS9980.114ENSIPUG00000021749yars9980.114Ictalurus_punctatus
ENSG00000134684YARS10096.402ENSSTOG00000012031YARS9496.402Ictidomys_tridecemlineatus
ENSG00000134684YARS10094.886ENSJJAG00000013281Yars9394.886Jaculus_jaculus
ENSG00000134684YARS10077.632ENSKMAG00000021752yars10077.820Kryptolebias_marmoratus
ENSG00000134684YARS10077.570ENSLBEG00000024080yars10077.757Labrus_bergylta
ENSG00000134684YARS10080.492ENSLACG00000015577YARS10080.492Latimeria_chalumnae
ENSG00000134684YARS9982.732ENSLOCG00000002165yars9982.732Lepisosteus_oculatus
ENSG00000134684YARS10096.023ENSLAFG00000003786YARS9696.023Loxodonta_africana
ENSG00000134684YARS10093.371ENSMFAG00000040933YARS10093.371Macaca_fascicularis
ENSG00000134684YARS10099.242ENSMMUG00000019746YARS10099.242Macaca_mulatta
ENSG00000134684YARS10091.337ENSMNEG00000031865YARS10091.337Macaca_nemestrina
ENSG00000134684YARS10098.674ENSMLEG00000041315YARS10098.674Mandrillus_leucophaeus
ENSG00000134684YARS10078.947ENSMAMG00000006092yars10079.135Mastacembelus_armatus
ENSG00000134684YARS10076.735ENSMZEG00005011426yars10076.923Maylandia_zebra
ENSG00000134684YARS9987.165ENSMGAG00000005063YARS9987.165Meleagris_gallopavo
ENSG00000134684YARS9796.296ENSMAUG00000021126Yars9996.296Mesocricetus_auratus
ENSG00000134684YARS10097.159ENSMICG00000011204YARS10097.159Microcebus_murinus
ENSG00000134684YARS10095.833ENSMOCG00000011342Yars9495.833Microtus_ochrogaster
ENSG00000134684YARS10075.000ENSMMOG00000021133yars10075.000Mola_mola
ENSG00000134684YARS10091.667ENSMODG00000017404YARS10091.667Monodelphis_domestica
ENSG00000134684YARS8583.283ENSMALG00000003648yars9083.283Monopterus_albus
ENSG00000134684YARS10096.591MGP_CAROLIEiJ_G0026513Yars9496.591Mus_caroli
ENSG00000134684YARS10096.591ENSMUSG00000028811Yars9496.591Mus_musculus
ENSG00000134684YARS10095.644MGP_PahariEiJ_G0028844Yars9495.644Mus_pahari
ENSG00000134684YARS10096.591MGP_SPRETEiJ_G0027493Yars9496.591Mus_spretus
ENSG00000134684YARS10095.265ENSMLUG00000000759YARS10095.265Myotis_lucifugus
ENSG00000134684YARS9894.412ENSNGAG00000001419Yars10095.874Nannospalax_galili
ENSG00000134684YARS10078.409ENSNBRG00000020413yars10078.409Neolamprologus_brichardi
ENSG00000134684YARS10098.674ENSNLEG00000002922YARS10098.674Nomascus_leucogenys
ENSG00000134684YARS7589.778ENSMEUG00000011824-7589.778Notamacropus_eugenii
ENSG00000134684YARS10090.530ENSOPRG00000003669YARS10090.530Ochotona_princeps
ENSG00000134684YARS10094.129ENSODEG00000005363YARS9494.129Octodon_degus
ENSG00000134684YARS10077.757ENSONIG00000015400yars10077.944Oreochromis_niloticus
ENSG00000134684YARS9383.065ENSOANG00000011779YARS9983.232Ornithorhynchus_anatinus
ENSG00000134684YARS10096.402ENSOCUG00000010007YARS10096.402Oryctolagus_cuniculus
ENSG00000134684YARS9878.476ENSORLG00000013982yars9678.476Oryzias_latipes
ENSG00000134684YARS10078.531ENSORLG00020020750yars10078.908Oryzias_latipes_hni
ENSG00000134684YARS10077.861ENSORLG00015008963yars10078.424Oryzias_latipes_hsok
ENSG00000134684YARS10078.531ENSOMEG00000013016yars9588.034Oryzias_melastigma
ENSG00000134684YARS10096.212ENSOGAG00000007359YARS10096.212Otolemur_garnettii
ENSG00000134684YARS10095.265ENSOARG00000020897YARS9395.265Ovis_aries
ENSG00000134684YARS10099.811ENSPPAG00000035791YARS9998.092Pan_paniscus
ENSG00000134684YARS10095.455ENSPPRG00000023768YARS10095.455Panthera_pardus
ENSG00000134684YARS10095.455ENSPTIG00000003438YARS10095.455Panthera_tigris_altaica
ENSG00000134684YARS10099.811ENSPTRG00000000491YARS10099.811Pan_troglodytes
ENSG00000134684YARS10099.053ENSPANG00000009804YARS10099.053Papio_anubis
ENSG00000134684YARS10080.871ENSPKIG00000024596yars10080.871Paramormyrops_kingsleyae
ENSG00000134684YARS9487.158ENSPSIG00000006945YARS10074.717Pelodiscus_sinensis
ENSG00000134684YARS10077.652ENSPMGG00000022917yars10077.652Periophthalmus_magnuspinnatus
ENSG00000134684YARS10096.402ENSPEMG00000010746Yars9496.402Peromyscus_maniculatus_bairdii
ENSG00000134684YARS9992.410ENSPCIG00000022457YARS9992.410Phascolarctos_cinereus
ENSG00000134684YARS10078.008ENSPFOG00000014808yars10078.571Poecilia_formosa
ENSG00000134684YARS10078.195ENSPLAG00000020075yars10078.759Poecilia_latipinna
ENSG00000134684YARS10078.008ENSPMEG00000002803yars10078.571Poecilia_mexicana
ENSG00000134684YARS10078.598ENSPREG00000018280yars10078.788Poecilia_reticulata
ENSG00000134684YARS10096.987ENSPPYG00000001585YARS10096.987Pongo_abelii
ENSG00000134684YARS8196.552ENSPCAG00000011170YARS8196.552Procavia_capensis
ENSG00000134684YARS10096.970ENSPCOG00000021026YARS10096.970Propithecus_coquereli
ENSG00000134684YARS10095.265ENSPVAG00000010984YARS10095.265Pteropus_vampyrus
ENSG00000134684YARS10078.220ENSPNYG00000000860yars10078.220Pundamilia_nyererei
ENSG00000134684YARS10080.718ENSPNAG00000009622yars10080.718Pygocentrus_nattereri
ENSG00000134684YARS10095.076ENSRNOG00000007213Yars9495.076Rattus_norvegicus
ENSG00000134684YARS8282.500ENSRBIG00000044271-9682.500Rhinopithecus_bieti
ENSG00000134684YARS10098.864ENSRROG00000039913YARS10098.864Rhinopithecus_roxellana
ENSG00000134684YARS10099.053ENSSBOG00000030205YARS10099.053Saimiri_boliviensis_boliviensis
ENSG00000134684YARS10090.341ENSSHAG00000011851YARS10090.341Sarcophilus_harrisii
ENSG00000134684YARS10082.008ENSSFOG00015007179yars10082.008Scleropages_formosus
ENSG00000134684YARS10075.947ENSSMAG00000020736yars10075.947Scophthalmus_maximus
ENSG00000134684YARS10079.057ENSSDUG00000001782yars10079.245Seriola_dumerili
ENSG00000134684YARS10079.735ENSSLDG00000008268yars10079.735Seriola_lalandi_dorsalis
ENSG00000134684YARS8682.784ENSSARG00000012227-8682.784Sorex_araneus
ENSG00000134684YARS10086.742ENSSPUG00000000333YARS10086.742Sphenodon_punctatus
ENSG00000134684YARS10077.903ENSSPAG00000020632yars10075.283Stegastes_partitus
ENSG00000134684YARS10095.833ENSSSCG00000030369YARS10095.833Sus_scrofa
ENSG00000134684YARS10087.689ENSTGUG00000001342YARS10087.689Taeniopygia_guttata
ENSG00000134684YARS9980.534ENSTRUG00000014099yars9980.534Takifugu_rubripes
ENSG00000134684YARS9978.937ENSTNIG00000009237yars9978.937Tetraodon_nigroviridis
ENSG00000134684YARS9683.890ENSTBEG00000014374YARS10083.890Tupaia_belangeri
ENSG00000134684YARS10094.697ENSTTRG00000014987YARS10094.697Tursiops_truncatus
ENSG00000134684YARS10092.045ENSUAMG00000000392YARS10088.447Ursus_americanus
ENSG00000134684YARS10084.991ENSUMAG00000008312YARS9384.991Ursus_maritimus
ENSG00000134684YARS10082.798ENSVPAG00000010958YARS10082.798Vicugna_pacos
ENSG00000134684YARS10095.833ENSVVUG00000015468YARS9995.499Vulpes_vulpes
ENSG00000134684YARS10079.356ENSXETG00000027865yars10079.356Xenopus_tropicalis
ENSG00000134684YARS9578.131ENSXMAG00000016348yars8278.728Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding21873635.IBAFunction
GO:0003723RNA binding22658674.HDAFunction
GO:0004831tyrosine-tRNA ligase activity21873635.IBAFunction
GO:0005153interleukin-8 receptor binding10102815.TASFunction
GO:0005515protein binding24965446.25533949.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005615extracellular space10102815.TASComponent
GO:0005737cytoplasm9162081.TASComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0006418tRNA aminoacylation for protein translation21873635.IBAProcess
GO:0006418tRNA aminoacylation for protein translation-TASProcess
GO:0006437tyrosyl-tRNA aminoacylation-IEAProcess
GO:0006915apoptotic process10102815.TASProcess
GO:0016604nuclear body-IDAComponent
GO:0017101aminoacyl-tRNA synthetase multienzyme complex21873635.IBAComponent
GO:0017102methionyl glutamyl tRNA synthetase complex21873635.IBAComponent

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us