EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000134744 (Gene tree)
Gene ID
23318
Gene Symbol
TUT4
Alias
KIAA0191|PAPD3|TENT3A|ZCCHC11
Full Name
terminal uridylyl transferase 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
145,206 bases
Position
chr1:52,408,282-52,553,487
Accession
28981
RBP type
canonical RBP
Summary
ZCCHC11 is an RNA uridyltransferase (EC 2.7.7.52) that uses UTP to add uridines to the 3-prime end of substrate RNA molecules (Jones et al., 2009 [PubMed 19701194]).[supplied by OMIM, Jan 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000360599zf-CCHCPF00098.231.6e-1012
ENSP00000360599zf-CCHCPF00098.231.6e-1022
ENSP00000257177zf-CCHCPF00098.231.6e-1012
ENSP00000257177zf-CCHCPF00098.231.6e-1022
ENSP00000433711zf-CCHCPF00098.233.3e-0812
ENSP00000433711zf-CCHCPF00098.233.3e-0822
ENSP00000435700zf-CCHCPF00098.233.3e-0812
ENSP00000435700zf-CCHCPF00098.233.3e-0822
ENSP00000433486PAP_assocPF03828.192.1e-2812
ENSP00000433486PAP_assocPF03828.192.1e-2822
ENSP00000360599PAP_assocPF03828.193.7e-2812
ENSP00000360599PAP_assocPF03828.193.7e-2822
ENSP00000257177PAP_assocPF03828.193.7e-2812
ENSP00000257177PAP_assocPF03828.193.7e-2822
ENSP00000433711PAP_assocPF03828.198e-1611
ENSP00000435700PAP_assocPF03828.198e-1611
ENSP00000435256PAP_assocPF03828.196.2e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
22006926Terminal uridyltransferase enzyme Zcchc11 promotes cell proliferation independent of its uridyltransferase activity.J Biol Chem2011 Dec 9Blahna MTdoi: 10.1074/jbc.M111.259689
25457611Trim25 Is an RNA-Specific Activator of Lin28a/TuT4-Mediated Uridylation.Cell Rep2014 Nov 20Choudhury NR-
300579013' RNA Uridylation in Epitranscriptomics, Gene Regulation, and Disease.Front Mol Biosci2018 Jul 13Menezes MRdoi: 10.3389/fmolb.2018.00061
30483311Function and Regulation of Human Terminal Uridylyltransferases.Front Genet2018 Nov 12Yashiro Ydoi: 10.3389/fgene.2018.00538
20403364Structure of the mitochondrial editosome-like complex associated TUTase 1 reveals divergent mechanisms of UTP selection and domain organization.J Mol Biol2010 Jun 11Stagno Jdoi: 10.1016/j.jmb.2010.04.021
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000469810TUT4-2063757--- (aa)--
ENST00000470626TUT4-208883-ENSP0000043436787 (aa)-E9PQS7
ENST00000481133TUT4-212521--- (aa)--
ENST00000528457TUT4-219553-ENSP00000432475164 (aa)-H0YCX5
ENST00000497120TUT4-216943--- (aa)--
ENST00000470212TUT4-207775--- (aa)--
ENST00000531722TUT4-2211016-ENSP00000435700338 (aa)-H0YEE8
ENST00000473856TUT4-2102047-ENSP00000432328343 (aa)-E9PRG2
ENST00000484723TUT4-2142910XM_011541101ENSP00000435256906 (aa)XP_011539403E9PKX1
ENST00000257177TUT4-2015743XM_005270676ENSP000002571771645 (aa)XP_005270733A0A0C4DFM7
ENST00000481528TUT4-213471--- (aa)--
ENST00000494469TUT4-215827-ENSP00000437091151 (aa)-H0YF28
ENST00000371541TUT4-2034319--- (aa)--
ENST00000528642TUT4-2203854XM_011541100ENSP000004334861203 (aa)XP_011539402E9PKY2
ENST00000371544TUT4-2045858XM_005270678ENSP000003605991644 (aa)XP_005270735Q5TAX3
ENST00000471623TUT4-209506-ENSP00000434674105 (aa)-H0YDZ6
ENST00000355809TUT4-2022152-ENSP00000348063309 (aa)-X6R5G7
ENST00000466440TUT4-2055763--- (aa)--
ENST00000474453TUT4-2111010-ENSP00000433711337 (aa)-H0YDJ1
ENST00000524582TUT4-217539-ENSP0000043556877 (aa)-E9PJN7
ENST00000527941TUT4-218691-ENSP00000436810108 (aa)-H0YEY0
Gene Model
Click here to download ENSG00000134744's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000134744Joint Instability2E-727182965
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000134744rs144781018152498488?General cognitive ability29844566z-score increase4.959EFO_0004337
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000134744's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000134744TUT45430.711ENSG00000164329TENT28030.151
ENSG00000134744TUT46468.733ENSG00000083223TUT710064.516
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000134744TUT46769.604ENSAPOG00000018983-9467.027Acanthochromis_polyacanthus
ENSG00000134744TUT410095.370ENSAMEG00000009340TUT410090.416Ailuropoda_melanoleuca
ENSG00000134744TUT45766.578ENSACIG00000018887-8450.827Amphilophus_citrinellus
ENSG00000134744TUT49862.575ENSACIG00000018199TUT49462.687Amphilophus_citrinellus
ENSG00000134744TUT49863.582ENSAOCG00000007862TUT48556.334Amphiprion_ocellaris
ENSG00000134744TUT49863.582ENSAPEG00000019857TUT48855.125Amphiprion_percula
ENSG00000134744TUT49862.874ENSATEG00000003823TUT49859.666Anabas_testudineus
ENSG00000134744TUT45767.655ENSATEG00000022516-9256.851Anabas_testudineus
ENSG00000134744TUT49976.401ENSAPLG00000006345TUT49965.341Anas_platyrhynchos
ENSG00000134744TUT410072.526ENSACAG00000008282TUT49859.905Anolis_carolinensis
ENSG00000134744TUT499100.000ENSANAG00000013486TUT49995.963Aotus_nancymaae
ENSG00000134744TUT49861.078ENSACLG00000023312TUT49361.791Astatotilapia_calliptera
ENSG00000134744TUT49959.195ENSAMXG00000007030TUT48755.453Astyanax_mexicanus
ENSG00000134744TUT49997.321ENSBTAG00000002721TUT410090.589Bos_taurus
ENSG00000134744TUT4100100.000ENSCJAG00000021588TUT410095.927Callithrix_jacchus
ENSG00000134744TUT410095.370ENSCAFG00000003734TUT410090.699Canis_familiaris
ENSG00000134744TUT49989.286ENSCAFG00020010923-9491.156Canis_lupus_dingo
ENSG00000134744TUT410096.491ENSCHIG00000023944TUT410089.341Capra_hircus
ENSG00000134744TUT49996.188ENSTSYG00000009885TUT410093.200Carlito_syrichta
ENSG00000134744TUT410094.444ENSCAPG00000005680TUT410075.258Cavia_aperea
ENSG00000134744TUT410094.444ENSCPOG00000005086TUT410084.249Cavia_porcellus
ENSG00000134744TUT46468.733ENSCCAG00000025142-6762.295Cebus_capucinus
ENSG00000134744TUT410099.013ENSCCAG00000036903TUT4100100.000Cebus_capucinus
ENSG00000134744TUT410099.074ENSCATG00000024618TUT410097.994Cercocebus_atys
ENSG00000134744TUT410093.519ENSCLAG00000005255TUT410087.320Chinchilla_lanigera
ENSG00000134744TUT410099.074ENSCSAG00000001277TUT410098.237Chlorocebus_sabaeus
ENSG00000134744TUT48799.602ENSCHOG00000010995TUT48698.744Choloepus_hoffmanni
ENSG00000134744TUT410080.000ENSCPBG00000014796TUT49865.241Chrysemys_picta_bellii
ENSG00000134744TUT410099.342ENSCANG00000036212TUT410097.636Colobus_angolensis_palliatus
ENSG00000134744TUT410092.593ENSCGRG00001020315-10087.725Cricetulus_griseus_chok1gshd
ENSG00000134744TUT410092.593ENSCGRG00000017571Tut410087.605Cricetulus_griseus_crigri
ENSG00000134744TUT49860.961ENSCSEG00000002476TUT49662.969Cynoglossus_semilaevis
ENSG00000134744TUT49860.479ENSCVAG00000012659TUT48162.082Cyprinodon_variegatus
ENSG00000134744TUT49758.651ENSDARG00000101404CABZ01065131.19959.243Danio_rerio
ENSG00000134744TUT49995.601ENSDNOG00000013920TUT410090.371Dasypus_novemcinctus
ENSG00000134744TUT49995.000ENSDORG00000027891Tut410088.309Dipodomys_ordii
ENSG00000134744TUT49983.333ENSETEG00000016298TUT48475.108Echinops_telfairi
ENSG00000134744TUT49939.710ENSEBUG00000009834TUT48950.085Eptatretus_burgeri
ENSG00000134744TUT49997.024ENSECAG00000021261TUT410090.767Equus_caballus
ENSG00000134744TUT410093.519ENSEEUG00000003834TUT49589.292Erinaceus_europaeus
ENSG00000134744TUT49762.162ENSELUG00000024167TUT48654.770Esox_lucius
ENSG00000134744TUT410095.370ENSFCAG00000003246TUT410091.930Felis_catus
ENSG00000134744TUT49976.106ENSFALG00000005607TUT49863.734Ficedula_albicollis
ENSG00000134744TUT49997.024ENSFDAG00000016676TUT410087.687Fukomys_damarensis
ENSG00000134744TUT49859.821ENSFHEG00000002296-9861.504Fundulus_heteroclitus
ENSG00000134744TUT49861.446ENSGMOG00000001281TUT49461.519Gadus_morhua
ENSG00000134744TUT49974.561ENSGALG00000010629TUT49968.453Gallus_gallus
ENSG00000134744TUT49861.791ENSGAFG00000011427-9861.834Gambusia_affinis
ENSG00000134744TUT49958.065ENSGACG00000005282-9161.364Gasterosteus_aculeatus
ENSG00000134744TUT49976.401ENSGAGG00000020531TUT49967.429Gopherus_agassizii
ENSG00000134744TUT49861.078ENSHBUG00000008564-9960.243Haplochromis_burtoni
ENSG00000134744TUT49996.131ENSHGLG00000000804TUT410088.211Heterocephalus_glaber_female
ENSG00000134744TUT49996.131ENSHGLG00100002051TUT410088.211Heterocephalus_glaber_male
ENSG00000134744TUT49861.261ENSHCOG00000009746-9760.793Hippocampus_comes
ENSG00000134744TUT48076.499ENSIPUG00000002638zcchc117076.499Ictalurus_punctatus
ENSG00000134744TUT49998.512ENSSTOG00000015611TUT410090.947Ictidomys_tridecemlineatus
ENSG00000134744TUT49862.687ENSKMAG00000017970TUT49662.150Kryptolebias_marmoratus
ENSG00000134744TUT49863.174ENSLBEG00000006518TUT48656.082Labrus_bergylta
ENSG00000134744TUT49966.667ENSLACG00000010748TUT49857.143Latimeria_chalumnae
ENSG00000134744TUT49865.116ENSLOCG00000006248TUT49164.030Lepisosteus_oculatus
ENSG00000134744TUT49995.015ENSLAFG00000003763TUT410089.793Loxodonta_africana
ENSG00000134744TUT410099.074ENSMFAG00000011842TUT410097.994Macaca_fascicularis
ENSG00000134744TUT410099.013ENSMMUG00000017023TUT410098.024Macaca_mulatta
ENSG00000134744TUT410099.074ENSMNEG00000009839TUT49991.228Macaca_nemestrina
ENSG00000134744TUT410099.074ENSMLEG00000036158TUT410098.116Mandrillus_leucophaeus
ENSG00000134744TUT48081.472ENSMAMG00000014890TUT49361.791Mastacembelus_armatus
ENSG00000134744TUT49861.078ENSMZEG00005017227TUT48761.791Maylandia_zebra
ENSG00000134744TUT49975.291ENSMGAG00000011185TUT410071.407Meleagris_gallopavo
ENSG00000134744TUT49686.275ENSMAUG00000010283Tut49985.539Mesocricetus_auratus
ENSG00000134744TUT49996.774ENSMICG00000015853TUT410090.948Microcebus_murinus
ENSG00000134744TUT49685.294ENSMOCG00000012851Tut410084.559Microtus_ochrogaster
ENSG00000134744TUT45766.398ENSMMOG00000017546-7749.261Mola_mola
ENSG00000134744TUT49860.725ENSMMOG00000016870-9563.880Mola_mola
ENSG00000134744TUT410078.507ENSMODG00000000618TUT49969.226Monodelphis_domestica
ENSG00000134744TUT49662.883ENSMALG00000014488-9661.209Monopterus_albus
ENSG00000134744TUT49991.964MGP_CAROLIEiJ_G0026268Tut410086.886Mus_caroli
ENSG00000134744TUT49991.964ENSMUSG00000034610Tut410086.639Mus_musculus
ENSG00000134744TUT410091.199MGP_PahariEiJ_G0028601Tut410087.126Mus_pahari
ENSG00000134744TUT410090.741MGP_SPRETEiJ_G0027237Tut410086.639Mus_spretus
ENSG00000134744TUT410097.337ENSMPUG00000006880TUT410088.179Mustela_putorius_furo
ENSG00000134744TUT410096.296ENSMLUG00000001067TUT410088.496Myotis_lucifugus
ENSG00000134744TUT49685.294ENSNGAG00000011508Tut410084.559Nannospalax_galili
ENSG00000134744TUT49860.778ENSNBRG00000005683-9563.524Neolamprologus_brichardi
ENSG00000134744TUT410099.074ENSNLEG00000017998TUT410097.447Nomascus_leucogenys
ENSG00000134744TUT49975.802ENSMEUG00000003865TUT48470.120Notamacropus_eugenii
ENSG00000134744TUT410090.741ENSOPRG00000016362TUT410076.321Ochotona_princeps
ENSG00000134744TUT410092.593ENSODEG00000007328TUT410086.475Octodon_degus
ENSG00000134744TUT47881.959ENSONIG00000019455TUT49956.087Oreochromis_niloticus
ENSG00000134744TUT410073.264ENSOANG00000012864TUT49961.277Ornithorhynchus_anatinus
ENSG00000134744TUT410095.370ENSOCUG00000002390TUT410088.119Oryctolagus_cuniculus
ENSG00000134744TUT410055.342ENSORLG00000013135-9563.906Oryzias_latipes
ENSG00000134744TUT49262.420ENSORLG00020002631-9564.062Oryzias_latipes_hni
ENSG00000134744TUT410055.890ENSORLG00015001219-9564.431Oryzias_latipes_hsok
ENSG00000134744TUT410049.462ENSOMEG00000015574-9561.420Oryzias_melastigma
ENSG00000134744TUT410093.465ENSOGAG00000005425TUT410090.158Otolemur_garnettii
ENSG00000134744TUT49995.894ENSOARG00000005494TUT410089.474Ovis_aries
ENSG00000134744TUT4100100.000ENSPPAG00000037653TUT410099.427Pan_paniscus
ENSG00000134744TUT410095.370ENSPPRG00000020521TUT410091.823Panthera_pardus
ENSG00000134744TUT410095.370ENSPTIG00000010511TUT410091.823Panthera_tigris_altaica
ENSG00000134744TUT4100100.000ENSPTRG00000000740TUT410099.514Pan_troglodytes
ENSG00000134744TUT410099.074ENSPANG00000005042TUT410096.606Papio_anubis
ENSG00000134744TUT49864.012ENSPKIG00000004670TUT49162.996Paramormyrops_kingsleyae
ENSG00000134744TUT49976.176ENSPSIG00000016704TUT49964.041Pelodiscus_sinensis
ENSG00000134744TUT49649.412ENSPMGG00000015621-6688.430Periophthalmus_magnuspinnatus
ENSG00000134744TUT49690.166ENSPEMG00000023722Tut410085.539Peromyscus_maniculatus_bairdii
ENSG00000134744TUT410077.266ENSPCIG00000022380TUT49867.440Phascolarctos_cinereus
ENSG00000134744TUT49856.973ENSPFOG00000002439TUT49555.922Poecilia_formosa
ENSG00000134744TUT49860.597ENSPLAG00000008701-9861.243Poecilia_latipinna
ENSG00000134744TUT49860.299ENSPMEG00000006996-9861.037Poecilia_mexicana
ENSG00000134744TUT4100100.000ENSPPYG00000001347TUT410098.601Pongo_abelii
ENSG00000134744TUT410094.444ENSPCAG00000013380TUT49277.863Procavia_capensis
ENSG00000134744TUT49996.774ENSPCOG00000007824TUT410089.976Propithecus_coquereli
ENSG00000134744TUT49994.428ENSPVAG00000009804TUT410082.817Pteropus_vampyrus
ENSG00000134744TUT49861.078ENSPNYG00000023175TUT48761.917Pundamilia_nyererei
ENSG00000134744TUT410051.523ENSPNAG00000022786TUT48855.096Pygocentrus_nattereri
ENSG00000134744TUT49991.667ENSRNOG00000052062Tut410086.531Rattus_norvegicus
ENSG00000134744TUT410099.074ENSRBIG00000027989TUT410095.137Rhinopithecus_bieti
ENSG00000134744TUT410099.074ENSRROG00000034868TUT410098.647Rhinopithecus_roxellana
ENSG00000134744TUT4100100.000ENSSBOG00000013661TUT410096.292Saimiri_boliviensis_boliviensis
ENSG00000134744TUT46468.464ENSSBOG00000020099-9851.825Saimiri_boliviensis_boliviensis
ENSG00000134744TUT410076.226ENSSHAG00000006231TUT410067.131Sarcophilus_harrisii
ENSG00000134744TUT49861.862ENSSFOG00015013524zcchc118657.143Scleropages_formosus
ENSG00000134744TUT49861.493ENSSMAG00000016072TUT48660.287Scophthalmus_maximus
ENSG00000134744TUT49863.174ENSSDUG00000021923TUT49662.958Seriola_dumerili
ENSG00000134744TUT49862.874ENSSLDG00000016071TUT48756.263Seriola_lalandi_dorsalis
ENSG00000134744TUT410094.444ENSSARG00000009798TUT49380.758Sorex_araneus
ENSG00000134744TUT49975.660ENSSPUG00000013287TUT49861.848Sphenodon_punctatus
ENSG00000134744TUT49861.976ENSSPAG00000008141-9556.496Stegastes_partitus
ENSG00000134744TUT49996.726ENSSSCG00000003859TUT410092.225Sus_scrofa
ENSG00000134744TUT49976.401ENSTGUG00000009011TUT49964.678Taeniopygia_guttata
ENSG00000134744TUT49255.255ENSTRUG00000024719-10058.405Takifugu_rubripes
ENSG00000134744TUT46877.500ENSTNIG00000002785-8677.500Tetraodon_nigroviridis
ENSG00000134744TUT490100.000ENSTBEG00000001230TUT473100.000Tupaia_belangeri
ENSG00000134744TUT49996.188ENSTTRG00000016142TUT410092.415Tursiops_truncatus
ENSG00000134744TUT410095.724ENSUAMG00000000759TUT49897.380Ursus_americanus
ENSG00000134744TUT410095.370ENSUMAG00000022669TUT410088.976Ursus_maritimus
ENSG00000134744TUT410093.519ENSVPAG00000000910TUT410086.468Vicugna_pacos
ENSG00000134744TUT410096.053ENSVVUG00000002703TUT49992.705Vulpes_vulpes
ENSG00000134744TUT49964.244ENSXETG00000008061tut49861.171Xenopus_tropicalis
ENSG00000134744TUT49861.194ENSXCOG00000007204-9861.424Xiphophorus_couchianus
ENSG00000134744TUT49861.194ENSXMAG00000000751-9861.573Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening-TASProcess
GO:0001556oocyte maturation-ISSProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding19703396.30122351.IPIFunction
GO:0005615extracellular space22664934.HDAComponent
GO:0005730nucleolus-IDAComponent
GO:0005737cytoplasm19703396.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0008270zinc ion binding-IEAFunction
GO:0010526negative regulation of transposition, RNA-mediated30122351.IDAProcess
GO:0010586miRNA metabolic process25979828.IDAProcess
GO:0010586miRNA metabolic process-ISSProcess
GO:0010587miRNA catabolic process19703396.IMPProcess
GO:0019827stem cell population maintenance19703396.IMPProcess
GO:0031054pre-miRNA processing25979828.IDAProcess
GO:0031054pre-miRNA processing19703396.IMPProcess
GO:0031123RNA 3'-end processing19703396.IDAProcess
GO:0035198miRNA binding-ISSFunction
GO:0036464cytoplasmic ribonucleoprotein granule30122351.IDAComponent
GO:0050265RNA uridylyltransferase activity19703396.25979828.IDAFunction
GO:0070062extracellular exosome19056867.HDAComponent
GO:0071044histone mRNA catabolic process18172165.IMPProcess
GO:0071076RNA 3' uridylation-ISSProcess
GO:1990074polyuridylation-dependent mRNA catabolic process-ISSProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us