EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000134748 (Gene tree)
Gene ID
84950
Gene Symbol
PRPF38A
Alias
FLJ14936|Prp38
Full Name
pre-mRNA processing factor 38A
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
16,293 bases
Position
chr1:52,404,547-52,420,839
Accession
25930
RBP type
canonical RBP
Summary
(Pre-MRNA Processing Factor 38A) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000257181PRP38PF03371.155.6e-6211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
26673105Multiple protein-protein interactions converging on the Prp38 protein during activation of the human spliceosome.RNA2016 FebSchutze Tdoi: 10.1261/rna.054296.115
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000474048PRPF38A-2021059--- (aa)--
ENST00000257181PRPF38A-2015274XM_011542315ENSP00000257181312 (aa)XP_011540617Q8NAV1
ENST00000487160PRPF38A-203926--- (aa)--
Gene Model
Click here to download ENSG00000134748's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000134748's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000134748PRPF38A7188.688ENSAPOG00000011652prpf38a10081.789Acanthochromis_polyacanthus
ENSG00000134748PRPF38A100100.000ENSAMEG00000009319PRPF38A100100.000Ailuropoda_melanoleuca
ENSG00000134748PRPF38A7186.425ENSACIG00000012292prpf38a7685.714Amphilophus_citrinellus
ENSG00000134748PRPF38A7188.688ENSAOCG00000018004prpf38a10081.789Amphiprion_ocellaris
ENSG00000134748PRPF38A7188.688ENSAPEG00000021414prpf38a10081.789Amphiprion_percula
ENSG00000134748PRPF38A7189.140ENSATEG00000004608prpf38a10081.789Anabas_testudineus
ENSG00000134748PRPF38A7997.571ENSAPLG00000005827PRPF38A9997.571Anas_platyrhynchos
ENSG00000134748PRPF38A10095.833ENSACAG00000008249PRPF38A10095.833Anolis_carolinensis
ENSG00000134748PRPF38A100100.000ENSANAG00000027839PRPF38A100100.000Aotus_nancymaae
ENSG00000134748PRPF38A10067.722ENSANAG00000029204-10062.342Aotus_nancymaae
ENSG00000134748PRPF38A7186.425ENSACLG00000021595prpf38a10080.192Astatotilapia_calliptera
ENSG00000134748PRPF38A10082.428ENSAMXG00000029274prpf38a10082.428Astyanax_mexicanus
ENSG00000134748PRPF38A100100.000ENSBTAG00000002720PRPF38A100100.000Bos_taurus
ENSG00000134748PRPF38A6362.564WBGene00008380prp-386761.574Caenorhabditis_elegans
ENSG00000134748PRPF38A100100.000ENSCJAG00000021594PRPF38A100100.000Callithrix_jacchus
ENSG00000134748PRPF38A100100.000ENSCAFG00000003740PRPF38A100100.000Canis_familiaris
ENSG00000134748PRPF38A100100.000ENSCAFG00020010939PRPF38A100100.000Canis_lupus_dingo
ENSG00000134748PRPF38A100100.000ENSCHIG00000024730PRPF38A100100.000Capra_hircus
ENSG00000134748PRPF38A8698.885ENSTSYG00000031994-9598.885Carlito_syrichta
ENSG00000134748PRPF38A100100.000ENSTSYG00000009868-100100.000Carlito_syrichta
ENSG00000134748PRPF38A100100.000ENSCPOG00000005079PRPF38A100100.000Cavia_porcellus
ENSG00000134748PRPF38A10099.679ENSCCAG00000026502PRPF38A10099.679Cebus_capucinus
ENSG00000134748PRPF38A10064.423ENSCATG00000044190-10063.141Cercocebus_atys
ENSG00000134748PRPF38A100100.000ENSCATG00000032296PRPF38A100100.000Cercocebus_atys
ENSG00000134748PRPF38A100100.000ENSCLAG00000005816PRPF38A100100.000Chinchilla_lanigera
ENSG00000134748PRPF38A7897.917ENSCHOG00000008388PRPF38A7797.917Choloepus_hoffmanni
ENSG00000134748PRPF38A10098.077ENSCPBG00000014791PRPF38A10098.077Chrysemys_picta_bellii
ENSG00000134748PRPF38A6771.429ENSCSAVG00000009580-7865.678Ciona_savignyi
ENSG00000134748PRPF38A96100.000ENSCANG00000032608PRPF38A100100.000Colobus_angolensis_palliatus
ENSG00000134748PRPF38A7484.848ENSCGRG00001002557-7884.848Cricetulus_griseus_chok1gshd
ENSG00000134748PRPF38A10099.679ENSCGRG00001018502-10099.679Cricetulus_griseus_chok1gshd
ENSG00000134748PRPF38A10099.679ENSCGRG00000014868Prpf38a10099.679Cricetulus_griseus_crigri
ENSG00000134748PRPF38A7187.783ENSCSEG00000001269prpf38a7987.013Cynoglossus_semilaevis
ENSG00000134748PRPF38A7190.498ENSCVAG00000012305prpf38a10082.428Cyprinodon_variegatus
ENSG00000134748PRPF38A10081.789ENSDARG00000039213prpf38a10081.789Danio_rerio
ENSG00000134748PRPF38A100100.000ENSDNOG00000042326PRPF38A100100.000Dasypus_novemcinctus
ENSG00000134748PRPF38A8483.270ENSDORG00000023691-7887.665Dipodomys_ordii
ENSG00000134748PRPF38A8483.270ENSDORG00000025371-7887.665Dipodomys_ordii
ENSG00000134748PRPF38A10086.538ENSDORG00000023857-10086.538Dipodomys_ordii
ENSG00000134748PRPF38A6375.635FBgn0050342Prp385776.596Drosophila_melanogaster
ENSG00000134748PRPF38A7681.092ENSEBUG00000012588prpf38a7581.116Eptatretus_burgeri
ENSG00000134748PRPF38A100100.000ENSEASG00005014427PRPF38A100100.000Equus_asinus_asinus
ENSG00000134748PRPF38A100100.000ENSECAG00000022628PRPF38A100100.000Equus_caballus
ENSG00000134748PRPF38A7186.878ENSELUG00000021094prpf38a10080.511Esox_lucius
ENSG00000134748PRPF38A100100.000ENSFCAG00000002518PRPF38A100100.000Felis_catus
ENSG00000134748PRPF38A9984.887ENSFALG00000003612-7790.043Ficedula_albicollis
ENSG00000134748PRPF38A8796.679ENSFALG00000005598-10096.679Ficedula_albicollis
ENSG00000134748PRPF38A10099.679ENSFDAG00000011287PRPF38A10099.679Fukomys_damarensis
ENSG00000134748PRPF38A8478.788ENSFHEG00000014317prpf38a7888.745Fundulus_heteroclitus
ENSG00000134748PRPF38A5394.578ENSGMOG00000011384prpf38a5494.578Gadus_morhua
ENSG00000134748PRPF38A10097.756ENSGALG00000010627PRPF38A10097.756Gallus_gallus
ENSG00000134748PRPF38A7190.498ENSGAFG00000012422prpf38a10082.428Gambusia_affinis
ENSG00000134748PRPF38A7186.099ENSGACG00000005423prpf38a10079.365Gasterosteus_aculeatus
ENSG00000134748PRPF38A10098.397ENSGAGG00000020547PRPF38A10098.397Gopherus_agassizii
ENSG00000134748PRPF38A100100.000ENSGGOG00000003940PRPF38A100100.000Gorilla_gorilla
ENSG00000134748PRPF38A6191.005ENSHBUG00000020572prpf38a8090.957Haplochromis_burtoni
ENSG00000134748PRPF38A100100.000ENSHGLG00000000475PRPF38A100100.000Heterocephalus_glaber_female
ENSG00000134748PRPF38A10083.654ENSHGLG00000007918-10083.333Heterocephalus_glaber_female
ENSG00000134748PRPF38A10083.654ENSHGLG00100003928-10083.333Heterocephalus_glaber_male
ENSG00000134748PRPF38A100100.000ENSHGLG00100008935PRPF38A100100.000Heterocephalus_glaber_male
ENSG00000134748PRPF38A8769.373ENSHCOG00000020781prpf38a5990.957Hippocampus_comes
ENSG00000134748PRPF38A7487.500ENSIPUG00000005757prpf38a7587.500Ictalurus_punctatus
ENSG00000134748PRPF38A100100.000ENSSTOG00000015610PRPF38A100100.000Ictidomys_tridecemlineatus
ENSG00000134748PRPF38A10098.718ENSJJAG00000015811Prpf38a10098.718Jaculus_jaculus
ENSG00000134748PRPF38A7190.045ENSKMAG00000006588prpf38a10082.109Kryptolebias_marmoratus
ENSG00000134748PRPF38A9679.195ENSLBEG00000020585prpf38a10079.553Labrus_bergylta
ENSG00000134748PRPF38A10092.308ENSLACG00000011495PRPF38A10092.308Latimeria_chalumnae
ENSG00000134748PRPF38A10080.192ENSLOCG00000006262prpf38a10081.470Lepisosteus_oculatus
ENSG00000134748PRPF38A100100.000ENSLAFG00000025862PRPF38A100100.000Loxodonta_africana
ENSG00000134748PRPF38A100100.000ENSMFAG00000039449PRPF38A100100.000Macaca_fascicularis
ENSG00000134748PRPF38A8799.265ENSMMUG00000014333PRPF38A9899.265Macaca_mulatta
ENSG00000134748PRPF38A100100.000ENSMNEG00000031221PRPF38A100100.000Macaca_nemestrina
ENSG00000134748PRPF38A10064.744ENSMNEG00000040242-10063.782Macaca_nemestrina
ENSG00000134748PRPF38A100100.000ENSMLEG00000041105PRPF38A100100.000Mandrillus_leucophaeus
ENSG00000134748PRPF38A7188.235ENSMAMG00000015431prpf38a10081.470Mastacembelus_armatus
ENSG00000134748PRPF38A7186.425ENSMZEG00005017838prpf38a10080.192Maylandia_zebra
ENSG00000134748PRPF38A9697.659ENSMGAG00000011176PRPF38A10097.659Meleagris_gallopavo
ENSG00000134748PRPF38A8594.697ENSMAUG00000018029-8794.805Mesocricetus_auratus
ENSG00000134748PRPF38A100100.000ENSMICG00000014193PRPF38A100100.000Microcebus_murinus
ENSG00000134748PRPF38A10099.679ENSMOCG00000013080Prpf38a10099.679Microtus_ochrogaster
ENSG00000134748PRPF38A8381.783ENSMMOG00000016972prpf38a8187.446Mola_mola
ENSG00000134748PRPF38A10098.403ENSMODG00000000644PRPF38A10098.403Monodelphis_domestica
ENSG00000134748PRPF38A7188.235ENSMALG00000019363prpf38a9781.470Monopterus_albus
ENSG00000134748PRPF38A10098.718MGP_CAROLIEiJ_G0026269Prpf38a10098.718Mus_caroli
ENSG00000134748PRPF38A10098.718ENSMUSG00000063800Prpf38a10098.718Mus_musculus
ENSG00000134748PRPF38A10098.718MGP_PahariEiJ_G0028602Prpf38a10098.718Mus_pahari
ENSG00000134748PRPF38A10098.397MGP_SPRETEiJ_G0027238Prpf38a10098.522Mus_spretus
ENSG00000134748PRPF38A100100.000ENSMPUG00000006896PRPF38A100100.000Mustela_putorius_furo
ENSG00000134748PRPF38A10099.679ENSNGAG00000011884Prpf38a10099.679Nannospalax_galili
ENSG00000134748PRPF38A7185.068ENSNBRG00000004013prpf38a7484.416Neolamprologus_brichardi
ENSG00000134748PRPF38A93100.000ENSNLEG00000017999PRPF38A93100.000Nomascus_leucogenys
ENSG00000134748PRPF38A10067.308ENSNLEG00000033398-9467.308Nomascus_leucogenys
ENSG00000134748PRPF38A9773.841ENSNLEG00000012592-9973.841Nomascus_leucogenys
ENSG00000134748PRPF38A10094.872ENSMEUG00000003860PRPF38A10094.872Notamacropus_eugenii
ENSG00000134748PRPF38A7799.583ENSOPRG00000008985PRPF38A10099.583Ochotona_princeps
ENSG00000134748PRPF38A100100.000ENSODEG00000005869PRPF38A100100.000Octodon_degus
ENSG00000134748PRPF38A7186.878ENSONIG00000007816prpf38a10080.511Oreochromis_niloticus
ENSG00000134748PRPF38A10064.968ENSOANG00000009541-10064.968Ornithorhynchus_anatinus
ENSG00000134748PRPF38A100100.000ENSOCUG00000000963PRPF38A100100.000Oryctolagus_cuniculus
ENSG00000134748PRPF38A9682.333ENSORLG00000013485prpf38a9982.372Oryzias_latipes
ENSG00000134748PRPF38A9682.333ENSORLG00020002130prpf38a9982.372Oryzias_latipes_hni
ENSG00000134748PRPF38A9682.000ENSORLG00015021393prpf38a9982.051Oryzias_latipes_hsok
ENSG00000134748PRPF38A9681.879ENSOMEG00000016333prpf38a10081.789Oryzias_melastigma
ENSG00000134748PRPF38A100100.000ENSOGAG00000005423PRPF38A100100.000Otolemur_garnettii
ENSG00000134748PRPF38A100100.000ENSOARG00000005373PRPF38A100100.000Ovis_aries
ENSG00000134748PRPF38A10077.564ENSPPAG00000033867-10077.564Pan_paniscus
ENSG00000134748PRPF38A100100.000ENSPPAG00000030905PRPF38A100100.000Pan_paniscus
ENSG00000134748PRPF38A100100.000ENSPPRG00000013268PRPF38A100100.000Panthera_pardus
ENSG00000134748PRPF38A100100.000ENSPTIG00000015419PRPF38A100100.000Panthera_tigris_altaica
ENSG00000134748PRPF38A100100.000ENSPTRG00000000739PRPF38A100100.000Pan_troglodytes
ENSG00000134748PRPF38A100100.000ENSPANG00000015483PRPF38A100100.000Papio_anubis
ENSG00000134748PRPF38A10078.846ENSPKIG00000011439prpf38a10080.128Paramormyrops_kingsleyae
ENSG00000134748PRPF38A10097.756ENSPSIG00000017487PRPF38A10097.756Pelodiscus_sinensis
ENSG00000134748PRPF38A7089.401ENSPMGG00000021352prpf38a9978.641Periophthalmus_magnuspinnatus
ENSG00000134748PRPF38A10099.679ENSPEMG00000023277-10099.679Peromyscus_maniculatus_bairdii
ENSG00000134748PRPF38A10093.651ENSPEMG00000011212-10093.651Peromyscus_maniculatus_bairdii
ENSG00000134748PRPF38A10098.083ENSPCIG00000022369-10098.083Phascolarctos_cinereus
ENSG00000134748PRPF38A8381.467ENSPFOG00000004248prpf38a10082.428Poecilia_formosa
ENSG00000134748PRPF38A9277.055ENSPLAG00000010328prpf38a10082.428Poecilia_latipinna
ENSG00000134748PRPF38A8479.323ENSPMEG00000011804prpf38a10082.428Poecilia_mexicana
ENSG00000134748PRPF38A9573.667ENSPREG00000002835prpf38a5894.149Poecilia_reticulata
ENSG00000134748PRPF38A10091.483ENSPPYG00000001348PRPF38A10091.483Pongo_abelii
ENSG00000134748PRPF38A10099.359ENSPCAG00000013328PRPF38A10099.359Procavia_capensis
ENSG00000134748PRPF38A10076.923ENSPCOG00000020709-7681.385Propithecus_coquereli
ENSG00000134748PRPF38A100100.000ENSPCOG00000016387-100100.000Propithecus_coquereli
ENSG00000134748PRPF38A100100.000ENSPVAG00000009803PRPF38A100100.000Pteropus_vampyrus
ENSG00000134748PRPF38A7186.425ENSPNYG00000005571prpf38a10080.192Pundamilia_nyererei
ENSG00000134748PRPF38A10082.428ENSPNAG00000010399prpf38a10082.428Pygocentrus_nattereri
ENSG00000134748PRPF38A10099.359ENSRNOG00000009451Prpf38a10099.359Rattus_norvegicus
ENSG00000134748PRPF38A100100.000ENSRBIG00000036442PRPF38A100100.000Rhinopithecus_bieti
ENSG00000134748PRPF38A10062.500ENSRBIG00000034053-10059.295Rhinopithecus_bieti
ENSG00000134748PRPF38A100100.000ENSRROG00000032788PRPF38A100100.000Rhinopithecus_roxellana
ENSG00000134748PRPF38A9878.758ENSRROG00000040003-9978.758Rhinopithecus_roxellana
ENSG00000134748PRPF38A100100.000ENSSBOG00000019515PRPF38A100100.000Saimiri_boliviensis_boliviensis
ENSG00000134748PRPF38A9671.053ENSSHAG00000006029-7481.900Sarcophilus_harrisii
ENSG00000134748PRPF38A8797.786ENSSHAG00000006906-10097.786Sarcophilus_harrisii
ENSG00000134748PRPF38A10078.914ENSSFOG00015013572prpf38a10079.553Scleropages_formosus
ENSG00000134748PRPF38A7188.688ENSSMAG00000015379prpf38a7587.879Scophthalmus_maximus
ENSG00000134748PRPF38A7189.140ENSSDUG00000001324prpf38a10082.109Seriola_dumerili
ENSG00000134748PRPF38A7189.140ENSSLDG00000014803prpf38a10082.109Seriola_lalandi_dorsalis
ENSG00000134748PRPF38A10082.692ENSSARG00000014458PRPF38A10082.692Sorex_araneus
ENSG00000134748PRPF38A10096.154ENSSPUG00000013259PRPF38A10096.154Sphenodon_punctatus
ENSG00000134748PRPF38A7170.588ENSSPAG00000010449prpf38a10064.103Stegastes_partitus
ENSG00000134748PRPF38A100100.000ENSSSCG00000028288PRPF38A100100.000Sus_scrofa
ENSG00000134748PRPF38A10093.590ENSTGUG00000008995PRPF38A10093.590Taeniopygia_guttata
ENSG00000134748PRPF38A7188.235ENSTRUG00000003374prpf38a7187.446Takifugu_rubripes
ENSG00000134748PRPF38A7186.547ENSTNIG00000005533prpf38a10080.000Tetraodon_nigroviridis
ENSG00000134748PRPF38A10099.359ENSTBEG00000000725PRPF38A10099.359Tupaia_belangeri
ENSG00000134748PRPF38A100100.000ENSTTRG00000016139PRPF38A100100.000Tursiops_truncatus
ENSG00000134748PRPF38A100100.000ENSUAMG00000000625PRPF38A100100.000Ursus_americanus
ENSG00000134748PRPF38A100100.000ENSUMAG00000022674PRPF38A100100.000Ursus_maritimus
ENSG00000134748PRPF38A7499.567ENSVPAG00000000907PRPF38A10094.231Vicugna_pacos
ENSG00000134748PRPF38A100100.000ENSVVUG00000004475PRPF38A100100.000Vulpes_vulpes
ENSG00000134748PRPF38A10084.345ENSXETG00000008060prpf38a10088.179Xenopus_tropicalis
ENSG00000134748PRPF38A7188.341ENSXCOG00000007393prpf38a7787.554Xiphophorus_couchianus
ENSG00000134748PRPF38A7190.498ENSXMAG00000026143prpf38a10082.428Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome28781166.IDAProcess
GO:0000398mRNA splicing, via spliceosome26673105.IMPProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22681889.HDAFunction
GO:0005515protein binding22365833.23455924.23602568.25416956.IPIFunction
GO:0005634nucleus28781166.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0031965nuclear membrane-IDAComponent
GO:0071005U2-type precatalytic spliceosome28781166.IDAComponent
GO:0071011precatalytic spliceosome21873635.IBAComponent
GO:0071011precatalytic spliceosome26673105.IDAComponent

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