EuRBPDB

Description

Ensembl ID: ENSG00000135521 (Gene tree)
Gene ID: 84946
Gene Symbol: LTV1
Alias: FLJ14909|dJ468K18.4|C6orf93
Full Name: LTV1 ribosome biogenesis factor
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 20,469 bases
Position: chr6:143,843,344-143,863,812
Accession: 21173
RBP type: non-canonical RBP
Summary: (LTV1 Ribosome Biogenesis Factor) is a Protein Coding gene. Diseases associated with LTV1 include Spinal Cord Disease. Among its related pathways are Gene Expression and rRNA processing in the nucleus and cytosol. An important paralog of this gene is ENSG00000280148.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
21283762	Protein-protein interactions within late pre-40S ribosomes.	PLoS One	2011 Jan 20	Campbell MG	doi: 10.1371/journal.pone.0016194.

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000367576	LTV1-201	1847	-	ENSP00000356548	475 (aa)	-	Q96GA3

Gene Model

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000135521	LTV1	100	85.684	ENSMUSG00000019814	Ltv1	100	85.684	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000056	ribosomal small subunit export from nucleus	21873635.	IBA	Process
GO:0005515	protein binding	25416956.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005829	cytosol	-	IDA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0031902	late endosome membrane	21873635.	IBA	Component
GO:0034448	EGO complex	21873635.	IBA	Component
GO:0042274	ribosomal small subunit biogenesis	21873635.	IBA	Process