RNA binding proteome (RBPome)
PID | Title | Method |
Time | Author | Doi |
---|
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & HEK293 | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & HEK293 | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
29431736 | Capturing the interactome of newly transcribed RNA | RIC & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & Hela | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & MCF10A | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & MCF7 | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & U2OS | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
30352994 | Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture | RIC & Jurkat | 2018 Oct 23 | Perez-Perri JI | DOI:10.1038/s41467-018-06557-8 |
Protein-Protein Interaction (PPI)
* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl ID | Gene Symbol | Coverage | Identiy |
Ortholog | Gene Symbol | Coverage | Identiy |
Species |
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ENSG00000136448 | NMT1 | 79 | 57.215 | WBGene00020549 | nmt-1 | 88 | 57.215 | Caenorhabditis_elegans |
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ENSG00000136448 | NMT1 | 80 | 65.000 | FBgn0020392 | Nmt | 84 | 65.000 | Drosophila_melanogaster |
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ENSG00000136448 | NMT1 | 100 | 98.611 | ENSMUSG00000020936 | Nmt1 | 100 | 97.379 | Mus_musculus |
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