EuRBPDB

Description

Ensembl ID: ENSG00000136813 (Gene tree)
Gene ID: 23392
Gene Symbol: ECPAS
Alias: FLJ22036|ECM29|KIAA0368
Full Name: Ecm29 proteasome adaptor and scaffold
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 124,054 bases
Position: chr9:111,360,692-111,484,745
Accession: 29020
RBP type: non-canonical RBP
Summary: (Ecm29 Proteasome Adaptor And Scaffold) is a Protein Coding gene. An important paralog of this gene is GCN1.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000338205	ECPAS-202	7078	XM_005251850	ENSP00000339889	1839 (aa)	XP_005251910	Q5VYK3
ENST00000465499	ECPAS-204	1189	-	-	- (aa)	-	-
ENST00000602447	ECPAS-205	2806	-	ENSP00000473399	890 (aa)	-	R4GMY1
ENST00000602978	ECPAS-206	539	-	ENSP00000473402	128 (aa)	-	R4GMY3
ENST00000259335	ECPAS-201	7391	-	ENSP00000259335	2017 (aa)	-	J3KN16
ENST00000374383	ECPAS-203	573	-	ENSP00000363504	142 (aa)	-	F6XAQ5

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000136813	Cholesterol	1.26306432542225E-5	17903299
ENSG00000136813	Neuropsychological Tests	3.74375967728569E-8	17903297

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000136813	rs184716813	9	111388967	C	Squamous cell lung carcinoma	28604730	[1.207670898-1.601479085]	1.3907048	EFO_0000708
ENSG00000136813	rs144875739	9	111431329	A	Blood protein levels	29875488	[0.81-1.13] unit decrease	0.97	EFO_0007937

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000502	proteasome complex	-	IEA	Component
GO:0005515	protein binding	25416956.	IPI	Function
GO:0005634	nucleus	15496406.	IDA	Component
GO:0005769	early endosome	15496406.	IDA	Component
GO:0005770	late endosome	15496406.	IDA	Component
GO:0005771	multivesicular body	20682791.	IDA	Component
GO:0005783	endoplasmic reticulum	15496406.	IDA	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	-	IEA	Component
GO:0005802	trans-Golgi network	15496406.	IDA	Component
GO:0005813	centrosome	15496406.	IDA	Component
GO:0016020	membrane	19946888.	HDA	Component
GO:0030134	COPII-coated ER to Golgi transport vesicle	15496406.	IDA	Component
GO:0030139	endocytic vesicle	20682791.	IDA	Component
GO:0030433	ubiquitin-dependent ERAD pathway	15496406.	IMP	Process
GO:0031410	cytoplasmic vesicle	15496406.	IDA	Component
GO:0043248	proteasome assembly	-	IEA	Process
GO:0060090	molecular adaptor activity	-	IEA	Function
GO:0070628	proteasome binding	15496406.	IDA	Function