EuRBPDB

Description

Ensembl ID: ENSG00000136891 (Gene tree)
Gene ID: 54881
Gene Symbol: TEX10
Alias: FLJ20287|bA208F1.2|Ipi1
Full Name: testis expressed 10
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 50,903 bases
Position: chr9:100,302,075-100,352,977
Accession: 25988
RBP type: non-canonical RBP
Summary: (Testis Expressed 10) is a Protein Coding gene. Among its related pathways are Gene Expression and rRNA processing in the nucleus and cytosol. Gene Ontology (GO) annotations related to this gene include binding. An important paralog of this gene is RMDN3.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000429235	TEX10-202	824	-	ENSP00000399872	171 (aa)	-	A0A0A0MSR3
ENST00000374902	TEX10-201	3074	XM_011518798	ENSP00000364037	929 (aa)	XP_011517100	Q9NXF1
ENST00000477648	TEX10-203	4457	-	-	- (aa)	-	-
ENST00000535814	TEX10-204	3006	-	ENSP00000444555	913 (aa)	-	Q9NXF1

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000136891	Cholesterol, HDL	9.7870000E-005	-
ENSG00000136891	Cholesterol, HDL	4.5210000E-005	-
ENSG00000136891	Cholesterol, HDL	4.8120000E-005	-
ENSG00000136891	Cholesterol, HDL	7.6310000E-005	-

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000136891	rs9299338	9	100345896	?	Body mass index	30595370			EFO_0004340
ENSG00000136891	rs7048601	9	100311981	?	Fat-free mass	30593698	[0.083-0.169] unit increase	0.12605	EFO_0004995

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000136891	TEX10	100	88.805	ENSMUSG00000028345	Tex10	100	88.805	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	21326211.	IPI	Function
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006364	rRNA processing	-	TAS	Process
GO:0071339	MLL1 complex	21873635.	IBA	Component
GO:0071339	MLL1 complex	15960975.	IDA	Component
GO:0097344	Rix1 complex	21873635.	IBA	Component