EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000137776 (Gene tree)
Gene ID
79811
Gene Symbol
SLTM
Alias
Met|FLJ13213
Full Name
SAFB like transcription modulator
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
55,269 bases
Position
chr15:58,879,045-58,934,313
Accession
20709
RBP type
canonical RBP
Summary
(SAFB Like Transcription Modulator) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is SAFB2.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000369887RRM_5PF13893.62.1e-0711
ENSP00000249736RRM_5PF13893.65.1e-0711
ENSP00000249736RRM_1PF00076.228.9e-1111
ENSP00000369887RRM_1PF00076.222.4e-1011
ENSP00000485870SAPPF02037.271.2e-1011
ENSP00000453065SAPPF02037.271.4e-1011
ENSP00000453987SAPPF02037.272e-1011
ENSP00000453179SAPPF02037.272.7e-1011
ENSP00000249736SAPPF02037.277e-1011
ENSP00000369887SAPPF02037.272.4e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
17630952A novel member of the SAF (scaffold attachment factor)-box protein family inhibits gene expression and induces apoptosis.Biochem J2007 Nov 1Chan CW-
27888239The increasing diversity of functions attributed to the SAFB family of RNA-/DNA-binding proteins.Biochem J2016 Dec 1Norman M-
31227213Two distinct nuclear stress bodies containing different sets of RNA-binding proteins are formed with HSATIII architectural noncoding RNAs upon thermal stress exposure.Biochem Biophys Res Commun2019 Aug 20Aly MKdoi: 10.1016/j.bbrc.2019.06.061
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000492526SLTM-2083022-ENSP00000453711177 (aa)-H0YMR6
ENST00000559261SLTM-218708-ENSP0000045377589 (aa)-H0YMW8
ENST00000560682SLTM-224495-ENSP00000453987161 (aa)-H0YNF3
ENST00000493062SLTM-209987--- (aa)--
ENST00000560532SLTM-223559--- (aa)--
ENST00000559305SLTM-219559-ENSP0000045337162 (aa)-H0YLW7
ENST00000558486SLTM-215585-ENSP00000453179192 (aa)-H0YLE6
ENST00000432750SLTM-2032383XM_006720690ENSP00000411534600 (aa)XP_006720753H7C3F4
ENST00000473359SLTM-204605--- (aa)--
ENST00000557950SLTM-213924--- (aa)--
ENST00000560494SLTM-222674-ENSP00000452805100 (aa)-H0YKH2
ENST00000628684SLTM-2261040-ENSP0000048587062 (aa)-H0YLW7
ENST00000557791SLTM-211334-ENSP00000453662111 (aa)-H0YMM0
ENST00000474342SLTM-205505--- (aa)--
ENST00000560695SLTM-225594--- (aa)--
ENST00000558756SLTM-217896-ENSP00000452945205 (aa)-H0YKU6
ENST00000480144SLTM-2062277--- (aa)--
ENST00000249736SLTM-2011373-ENSP00000249736453 (aa)-H7BXE3
ENST00000560012SLTM-221551--- (aa)--
ENST00000558734SLTM-216589--- (aa)--
ENST00000559880SLTM-220717-ENSP00000453065229 (aa)-H0YL55
ENST00000380516SLTM-2024147XM_006720686ENSP000003698871034 (aa)XP_006720749Q9NWH9
ENST00000484498SLTM-207685--- (aa)--
ENST00000497088SLTM-210716--- (aa)--
ENST00000558052SLTM-214806--- (aa)--
ENST00000557924SLTM-2123021-ENSP0000045400062 (aa)-H0YLW7
Gene Model
Click here to download ENSG00000137776's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000137776Iron3.959e-005-
ENSG00000137776Iron3.959e-005-
ENSG00000137776Insulin8.8470000E-005-
ENSG00000137776Platelet Function Tests9.2800000E-006-
ENSG00000137776Platelet Function Tests4.0919300E-005-
ENSG00000137776Asperger Syndrome7E-621182207
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000137776rs71794561558882340?Asperger disorder21182207EFO_0003757
ENSG00000137776rs287537011558883268TSkin pigmentation28300201[8.83-3.49] unit decrease6.16EFO_0003784
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000137776's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000137776SLTM8847.561ENSG00000130254SAFB25750.769
ENSG00000137776SLTM9435.535ENSG00000160633SAFB6564.486
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000137776SLTM9952.727ENSAPOG00000012346sltm9149.947Acanthochromis_polyacanthus
ENSG00000137776SLTM10092.000ENSAMEG00000004537SLTM10095.413Ailuropoda_melanoleuca
ENSG00000137776SLTM9956.364ENSACIG00000001971sltm9949.008Amphilophus_citrinellus
ENSG00000137776SLTM9953.636ENSAOCG00000002747sltm9948.826Amphiprion_ocellaris
ENSG00000137776SLTM9953.636ENSAPEG00000012366sltm9949.531Amphiprion_percula
ENSG00000137776SLTM9955.455ENSATEG00000003763sltm9150.159Anabas_testudineus
ENSG00000137776SLTM9980.000ENSAPLG00000013025SLTM5878.683Anas_platyrhynchos
ENSG00000137776SLTM9974.545ENSACAG00000015120SLTM9871.884Anolis_carolinensis
ENSG00000137776SLTM10098.066ENSANAG00000037031SLTM10098.066Aotus_nancymaae
ENSG00000137776SLTM9953.636ENSACLG00000002523sltm9949.297Astatotilapia_calliptera
ENSG00000137776SLTM9955.357ENSAMXG00000012409sltm9551.821Astyanax_mexicanus
ENSG00000137776SLTM10095.833ENSBTAG00000011319SLTM9694.629Bos_taurus
ENSG00000137776SLTM10097.389ENSCJAG00000020395SLTM10097.389Callithrix_jacchus
ENSG00000137776SLTM10096.476ENSCAFG00000016586SLTM9894.303Canis_familiaris
ENSG00000137776SLTM10094.000ENSCAFG00020011253SLTM10094.372Canis_lupus_dingo
ENSG00000137776SLTM10095.000ENSCHIG00000008780SLTM9894.297Capra_hircus
ENSG00000137776SLTM10097.000ENSTSYG00000013581SLTM9596.633Carlito_syrichta
ENSG00000137776SLTM9874.490ENSCAPG00000013326SLTM9685.431Cavia_aperea
ENSG00000137776SLTM9689.427ENSCPOG00000026109SLTM8492.674Cavia_porcellus
ENSG00000137776SLTM10098.356ENSCCAG00000022982SLTM10098.356Cebus_capucinus
ENSG00000137776SLTM10099.613ENSCATG00000030254SLTM10099.613Cercocebus_atys
ENSG00000137776SLTM9989.091ENSCLAG00000007160SLTM10090.890Chinchilla_lanigera
ENSG00000137776SLTM10099.613ENSCSAG00000012004SLTM10099.613Chlorocebus_sabaeus
ENSG00000137776SLTM10093.000ENSCHOG00000001125SLTM9795.726Choloepus_hoffmanni
ENSG00000137776SLTM9291.954ENSCPBG00000006045SLTM9882.503Chrysemys_picta_bellii
ENSG00000137776SLTM100100.000ENSCANG00000043731SLTM10099.694Colobus_angolensis_palliatus
ENSG00000137776SLTM9992.843ENSCGRG00001022009Sltm9892.927Cricetulus_griseus_chok1gshd
ENSG00000137776SLTM10089.297ENSCGRG00000014806Sltm10093.163Cricetulus_griseus_crigri
ENSG00000137776SLTM9663.636ENSCSEG00000001618sltm5844.268Cynoglossus_semilaevis
ENSG00000137776SLTM8359.459ENSCVAG00000005751-6954.455Cyprinodon_variegatus
ENSG00000137776SLTM9366.265ENSDARG00000052728sltm9461.538Danio_rerio
ENSG00000137776SLTM9994.912ENSDNOG00000002975SLTM9894.985Dasypus_novemcinctus
ENSG00000137776SLTM9990.000ENSDORG00000007463Sltm8994.808Dipodomys_ordii
ENSG00000137776SLTM10080.000ENSETEG00000008003SLTM5893.673Echinops_telfairi
ENSG00000137776SLTM10096.615ENSEASG00005006792SLTM10096.615Equus_asinus_asinus
ENSG00000137776SLTM10096.422ENSECAG00000011267SLTM10096.422Equus_caballus
ENSG00000137776SLTM9980.808ENSEEUG00000000580SLTM9190.123Erinaceus_europaeus
ENSG00000137776SLTM10060.356ENSELUG00000013388sltm9754.234Esox_lucius
ENSG00000137776SLTM10096.774ENSFCAG00000004826SLTM10096.774Felis_catus
ENSG00000137776SLTM9980.909ENSFALG00000012285SLTM5876.736Ficedula_albicollis
ENSG00000137776SLTM10088.198ENSFDAG00000018075SLTM10092.551Fukomys_damarensis
ENSG00000137776SLTM8457.692ENSFHEG00000014764sltm8945.852Fundulus_heteroclitus
ENSG00000137776SLTM8262.745ENSGMOG00000015455sltm6968.085Gadus_morhua
ENSG00000137776SLTM8183.562ENSGALG00000052242-6383.562Gallus_gallus
ENSG00000137776SLTM9955.455ENSGACG00000015814sltm9850.672Gasterosteus_aculeatus
ENSG00000137776SLTM9982.727ENSGAGG00000021279SLTM9884.848Gopherus_agassizii
ENSG00000137776SLTM100100.000ENSGGOG00000015866SLTM100100.000Gorilla_gorilla
ENSG00000137776SLTM9953.636ENSHBUG00000012461sltm9949.391Haplochromis_burtoni
ENSG00000137776SLTM9377.108ENSHGLG00000000785-8386.364Heterocephalus_glaber_female
ENSG00000137776SLTM10092.077ENSHGLG00000018512-9992.829Heterocephalus_glaber_female
ENSG00000137776SLTM10087.719ENSHGLG00000015426-6185.574Heterocephalus_glaber_female
ENSG00000137776SLTM9886.918ENSHGLG00100001757-6185.574Heterocephalus_glaber_male
ENSG00000137776SLTM9687.500ENSHGLG00100002576-6179.538Heterocephalus_glaber_male
ENSG00000137776SLTM9994.805ENSHGLG00100002674-6091.419Heterocephalus_glaber_male
ENSG00000137776SLTM9959.459ENSIPUG00000023201sltm9151.662Ictalurus_punctatus
ENSG00000137776SLTM10093.000ENSSTOG00000000584SLTM10096.224Ictidomys_tridecemlineatus
ENSG00000137776SLTM10094.000ENSJJAG00000006970Sltm9890.167Jaculus_jaculus
ENSG00000137776SLTM9457.143ENSKMAG00000007570sltm6347.894Kryptolebias_marmoratus
ENSG00000137776SLTM9954.545ENSLBEG00000025472sltm5147.610Labrus_bergylta
ENSG00000137776SLTM9972.072ENSLACG00000005234SLTM9965.684Latimeria_chalumnae
ENSG00000137776SLTM9765.169ENSLOCG00000013629sltm5954.750Lepisosteus_oculatus
ENSG00000137776SLTM9892.330ENSLAFG00000017922SLTM9892.330Loxodonta_africana
ENSG00000137776SLTM10099.710ENSMFAG00000033354SLTM10099.710Macaca_fascicularis
ENSG00000137776SLTM100100.000ENSMMUG00000022200SLTM100100.000Macaca_mulatta
ENSG00000137776SLTM10099.516ENSMNEG00000025105SLTM10099.516Macaca_nemestrina
ENSG00000137776SLTM10099.516ENSMLEG00000043355SLTM10099.516Mandrillus_leucophaeus
ENSG00000137776SLTM9961.818ENSMAMG00000021391sltm9150.968Mastacembelus_armatus
ENSG00000137776SLTM9953.636ENSMZEG00005013839sltm9949.297Maylandia_zebra
ENSG00000137776SLTM9977.273ENSMGAG00000005313SLTM5973.129Meleagris_gallopavo
ENSG00000137776SLTM10088.498ENSMAUG00000014391Sltm9893.333Mesocricetus_auratus
ENSG00000137776SLTM10096.909ENSMICG00000013069SLTM10096.422Microcebus_murinus
ENSG00000137776SLTM9892.920ENSMOCG00000012419Sltm9892.920Microtus_ochrogaster
ENSG00000137776SLTM9952.727ENSMMOG00000016470sltm5641.909Mola_mola
ENSG00000137776SLTM8561.842ENSMODG00000020311-6458.675Monodelphis_domestica
ENSG00000137776SLTM10083.000ENSMODG00000008794-9880.803Monodelphis_domestica
ENSG00000137776SLTM9954.545ENSMALG00000021474sltm9149.947Monopterus_albus
ENSG00000137776SLTM10091.000MGP_CAROLIEiJ_G0032404Sltm9890.855Mus_caroli
ENSG00000137776SLTM10091.000ENSMUSG00000032212Sltm9891.249Mus_musculus
ENSG00000137776SLTM10089.000MGP_PahariEiJ_G0015268Sltm9890.954Mus_pahari
ENSG00000137776SLTM10091.000MGP_SPRETEiJ_G0033542Sltm9890.954Mus_spretus
ENSG00000137776SLTM10093.000ENSMPUG00000004229SLTM9694.076Mustela_putorius_furo
ENSG00000137776SLTM10088.114ENSMLUG00000000742SLTM10092.480Myotis_lucifugus
ENSG00000137776SLTM10094.391ENSNGAG00000012328Sltm9894.395Nannospalax_galili
ENSG00000137776SLTM9953.636ENSNBRG00000010183sltm9149.341Neolamprologus_brichardi
ENSG00000137776SLTM10099.516ENSNLEG00000011440SLTM10099.516Nomascus_leucogenys
ENSG00000137776SLTM9390.909ENSMEUG00000015230SLTM5970.772Notamacropus_eugenii
ENSG00000137776SLTM9988.182ENSODEG00000017077SLTM9990.761Octodon_degus
ENSG00000137776SLTM9952.727ENSONIG00000005838sltm9948.019Oreochromis_niloticus
ENSG00000137776SLTM9187.629ENSOANG00000012311-9581.612Ornithorhynchus_anatinus
ENSG00000137776SLTM9993.939ENSOCUG00000003327SLTM8596.534Oryctolagus_cuniculus
ENSG00000137776SLTM9848.780ENSORLG00000008161sltm9944.785Oryzias_latipes
ENSG00000137776SLTM9947.748ENSORLG00020008903sltm6547.167Oryzias_latipes_hni
ENSG00000137776SLTM9947.748ENSORLG00015007103sltm9945.029Oryzias_latipes_hsok
ENSG00000137776SLTM9950.909ENSOMEG00000002041sltm9747.162Oryzias_melastigma
ENSG00000137776SLTM9254.878ENSOMEG00000002031-7262.500Oryzias_melastigma
ENSG00000137776SLTM9896.067ENSOGAG00000011297SLTM9896.067Otolemur_garnettii
ENSG00000137776SLTM10096.970ENSOARG00000020844SLTM9894.395Ovis_aries
ENSG00000137776SLTM100100.000ENSPPAG00000029308SLTM100100.000Pan_paniscus
ENSG00000137776SLTM10096.774ENSPPRG00000012400SLTM10096.774Panthera_pardus
ENSG00000137776SLTM10093.000ENSPTIG00000021933SLTM9596.429Panthera_tigris_altaica
ENSG00000137776SLTM100100.000ENSPTRG00000007121SLTM100100.000Pan_troglodytes
ENSG00000137776SLTM10099.000ENSPANG00000017193SLTM10098.387Papio_anubis
ENSG00000137776SLTM9960.000ENSPKIG00000022760sltm9956.644Paramormyrops_kingsleyae
ENSG00000137776SLTM9981.818ENSPSIG00000005489SLTM5979.542Pelodiscus_sinensis
ENSG00000137776SLTM9356.627ENSPMGG00000006037sltm5070.175Periophthalmus_magnuspinnatus
ENSG00000137776SLTM9892.051ENSPEMG00000013263Sltm9892.051Peromyscus_maniculatus_bairdii
ENSG00000137776SLTM9985.044ENSPCIG00000028356SLTM9886.842Phascolarctos_cinereus
ENSG00000137776SLTM9951.818ENSPFOG00000004372sltm6448.678Poecilia_formosa
ENSG00000137776SLTM9951.818ENSPLAG00000008000sltm9146.546Poecilia_latipinna
ENSG00000137776SLTM9951.818ENSPMEG00000006047sltm6448.678Poecilia_mexicana
ENSG00000137776SLTM9952.727ENSPREG00000023236sltm9044.978Poecilia_reticulata
ENSG00000137776SLTM100100.000ENSPPYG00000006515SLTM10098.453Pongo_abelii
ENSG00000137776SLTM10087.879ENSPCAG00000013482SLTM9881.238Procavia_capensis
ENSG00000137776SLTM10096.774ENSPCOG00000010624SLTM10096.774Propithecus_coquereli
ENSG00000137776SLTM93100.000ENSPVAG00000015056SLTM9893.314Pteropus_vampyrus
ENSG00000137776SLTM9953.636ENSPNYG00000013893sltm9949.297Pundamilia_nyererei
ENSG00000137776SLTM9667.059ENSPNAG00000020563sltm9853.751Pygocentrus_nattereri
ENSG00000137776SLTM10089.000ENSRNOG00000054446Sltm9890.659Rattus_norvegicus
ENSG00000137776SLTM10099.000ENSRBIG00000029226SLTM9999.490Rhinopithecus_bieti
ENSG00000137776SLTM100100.000ENSRROG00000045301SLTM10099.516Rhinopithecus_roxellana
ENSG00000137776SLTM10098.259ENSSBOG00000018883SLTM10098.259Saimiri_boliviensis_boliviensis
ENSG00000137776SLTM10083.000ENSSHAG00000015395SLTM9984.248Sarcophilus_harrisii
ENSG00000137776SLTM9961.798ENSSFOG00015024086-8469.863Scleropages_formosus
ENSG00000137776SLTM9668.182ENSSMAG00000000355sltm9948.536Scophthalmus_maximus
ENSG00000137776SLTM9170.732ENSSDUG00000018134sltm9949.478Seriola_dumerili
ENSG00000137776SLTM9170.732ENSSLDG00000013907sltm9949.335Seriola_lalandi_dorsalis
ENSG00000137776SLTM6391.071ENSSPUG00000001006-6290.909Sphenodon_punctatus
ENSG00000137776SLTM9860.000ENSSPAG00000008130sltm9949.347Stegastes_partitus
ENSG00000137776SLTM10097.572ENSSSCG00000004592SLTM10095.272Sus_scrofa
ENSG00000137776SLTM9980.909ENSTGUG00000006017SLTM5775.646Taeniopygia_guttata
ENSG00000137776SLTM10091.069ENSTBEG00000000945SLTM10088.673Tupaia_belangeri
ENSG00000137776SLTM10096.970ENSTTRG00000005246SLTM10096.325Tursiops_truncatus
ENSG00000137776SLTM6692.683ENSUAMG00000006773-8996.296Ursus_americanus
ENSG00000137776SLTM10093.000ENSUAMG00000025901SLTM10096.402Ursus_americanus
ENSG00000137776SLTM9694.266ENSUMAG00000023678SLTM10095.906Ursus_maritimus
ENSG00000137776SLTM10093.000ENSVPAG00000008606SLTM10095.413Vicugna_pacos
ENSG00000137776SLTM10094.000ENSVVUG00000001450SLTM9896.169Vulpes_vulpes
ENSG00000137776SLTM10059.542ENSXETG00000010840sltm9959.981Xenopus_tropicalis
ENSG00000137776SLTM9952.727ENSXMAG00000014466sltm6448.050Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0006357regulation of transcription by RNA polymerase II21873635.IBAProcess
GO:0006915apoptotic process-IEAProcess
GO:0016604nuclear body-IDAComponent
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0050684regulation of mRNA processing21873635.IBAProcess

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