EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000138303 (Gene tree)
Gene ID
51008
Gene Symbol
ASCC1
Alias
CGI-18|ASC1p50|Em:AC022392.3
Full Name
activating signal cointegrator 1 complex subunit 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
121,103 bases
Position
chr10:72,096,032-72,217,134
Accession
24268
RBP type
canonical RBP
Summary
This gene encodes a subunit of the activating signal cointegrator 1 (ASC-1) complex. The ASC-1 complex is a transcriptional coactivator that plays an important role in gene transactivation by multiple transcription factors including activating protein 1 (AP-1), nuclear factor kappa-B (NF-kB) and serum response factor (SRF). The encoded protein contains an N-terminal KH-type RNA-binding motif which is required for AP-1 transactivation by the ASC-1 complex. Mutations in this gene are associated with Barrett esophagus and esophageal adenocarcinoma. Alternatively spliced transcripts encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Dec 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000431573KH_1PF00013.294.5e-0811
ENSP00000431255KH_1PF00013.295.3e-0811
ENSP00000432418KH_1PF00013.297.3e-0811
ENSP00000320461KH_1PF00013.292.6e-0711
ENSP00000320810KH_1PF00013.292.6e-0711
ENSP00000378377KH_1PF00013.292.6e-0711
ENSP00000339404KH_1PF00013.291.8e-0611
ENSP00000378373KH_1PF00013.291.8e-0611
ENSP00000431299KH_1PF00013.292.6e-0611
ENSP00000431419KH_1PF00013.290.0001111
ENSP00000320461AKAP7_NLSPF10469.97.2e-5811
ENSP00000320810AKAP7_NLSPF10469.97.2e-5811
ENSP00000378377AKAP7_NLSPF10469.97.2e-5811
ENSP00000431299AKAP7_NLSPF10469.93.4e-4811
ENSP00000339404AKAP7_NLSPF10469.97.5e-4811
ENSP00000378373AKAP7_NLSPF10469.97.5e-4811
ENSP00000435147AKAP7_NLSPF10469.97.3e-2912
ENSP00000435147AKAP7_NLSPF10469.97.3e-2922
ENSP00000436409AKAP7_NLSPF10469.91.8e-2311
ENSP00000436098AKAP7_NLSPF10469.97.2e-1711

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
29997253RNA ligase-like domain in activating signal cointegrator 1 complex subunit 1 (ASCC1) regulates ASCC complex function during alkylation damage.J Biol Chem2018 Aug 31Soll JMdoi: 10.1074/jbc.RA117.000114
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000530461ASCC1-215548-ENSP00000431255124 (aa)-E9PM82
ENST00000526801ASCC1-212521--- (aa)--
ENST00000486689ASCC1-2071798XM_024448031ENSP00000431299292 (aa)XP_024303799H0YCB3
ENST00000530394ASCC1-214839-ENSP00000436409145 (aa)-H0YER2
ENST00000394915ASCC1-2041510-ENSP00000378373400 (aa)-Q8N9N2
ENST00000532011ASCC1-217569-ENSP0000043446843 (aa)-E9PQ44
ENST00000394919ASCC1-2052683XM_006717873ENSP00000378377357 (aa)XP_006717936Q8N9N2
ENST00000524829ASCC1-209581-ENSP00000431573123 (aa)-E9PKM6
ENST00000527593ASCC1-213580-ENSP00000432418152 (aa)-E9PQZ6
ENST00000461369ASCC1-206640-ENSP0000043519170 (aa)-H0YE79
ENST00000317126ASCC1-2011501XM_024448032ENSP00000320461357 (aa)XP_024303800Q8N9N2
ENST00000531048ASCC1-216450-ENSP00000436098139 (aa)-E9PR40
ENST00000525286ASCC1-210527-ENSP00000435147176 (aa)-H0YE76
ENST00000492502ASCC1-208902--- (aa)--
ENST00000317168ASCC1-2022002XM_011539841ENSP00000320810357 (aa)XP_011538143Q8N9N2
ENST00000526751ASCC1-211540-ENSP00000431419103 (aa)-E9PL92
ENST00000342444ASCC1-2032270XM_017016291ENSP00000339404400 (aa)XP_016871780Q8N9N2
ENST00000534259ASCC1-2192422--- (aa)--
ENST00000533958ASCC1-218599-ENSP0000043174656 (aa)-E9PJM2
Gene Model
Click here to download ENSG00000138303's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000138303rs110002121072195894?Body mass index30045251[0.17-0.4] unit increase0.284EFO_0004340
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000138303's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000138303ASCC110054.722ENSAPOG00000017956ascc110054.722Acanthochromis_polyacanthus
ENSG00000138303ASCC110093.137ENSAMEG00000017400ASCC19492.437Ailuropoda_melanoleuca
ENSG00000138303ASCC110055.125ENSACIG00000024515ascc110055.679Amphilophus_citrinellus
ENSG00000138303ASCC110055.556ENSAOCG00000009038ascc110055.556Amphiprion_ocellaris
ENSG00000138303ASCC110055.556ENSAPEG00000019742ascc110055.556Amphiprion_percula
ENSG00000138303ASCC19561.290ENSATEG00000023377ascc110054.039Anabas_testudineus
ENSG00000138303ASCC110074.510ENSAPLG00000007456ASCC19964.804Anas_platyrhynchos
ENSG00000138303ASCC110064.426ENSACAG00000001244ASCC19764.426Anolis_carolinensis
ENSG00000138303ASCC110099.020ENSANAG00000027828ASCC110098.039Aotus_nancymaae
ENSG00000138303ASCC19657.983ENSACLG00000004955ascc110055.125Astatotilapia_calliptera
ENSG00000138303ASCC19861.475ENSAMXG00000011705ascc110057.660Astyanax_mexicanus
ENSG00000138303ASCC110092.157ENSBTAG00000000392ASCC110091.036Bos_taurus
ENSG00000138303ASCC110099.020ENSCJAG00000007273ASCC110098.039Callithrix_jacchus
ENSG00000138303ASCC110092.157ENSCAFG00000014415ASCC110097.436Canis_familiaris
ENSG00000138303ASCC110092.157ENSCAFG00020025090ASCC110091.877Canis_lupus_dingo
ENSG00000138303ASCC110093.137ENSCHIG00000020844ASCC110091.317Capra_hircus
ENSG00000138303ASCC110096.359ENSTSYG00000012145ASCC110096.359Carlito_syrichta
ENSG00000138303ASCC19995.935ENSCAPG00000005505ASCC19590.938Cavia_aperea
ENSG00000138303ASCC19995.935ENSCPOG00000001670ASCC19692.500Cavia_porcellus
ENSG00000138303ASCC110099.020ENSCCAG00000029607ASCC110098.319Cebus_capucinus
ENSG00000138303ASCC1100100.000ENSCATG00000013018ASCC110089.916Cercocebus_atys
ENSG00000138303ASCC110095.161ENSCLAG00000012962ASCC110093.277Chinchilla_lanigera
ENSG00000138303ASCC1100100.000ENSCSAG00000008531ASCC19498.319Chlorocebus_sabaeus
ENSG00000138303ASCC19885.455ENSCHOG00000005884ASCC16792.073Choloepus_hoffmanni
ENSG00000138303ASCC19972.549ENSCPBG00000025878ASCC110066.387Chrysemys_picta_bellii
ENSG00000138303ASCC19941.690ENSCING00000000491-9941.690Ciona_intestinalis
ENSG00000138303ASCC110041.964ENSCSAVG00000011769-9841.667Ciona_savignyi
ENSG00000138303ASCC19999.429ENSCANG00000032893ASCC110086.555Colobus_angolensis_palliatus
ENSG00000138303ASCC110091.176ENSCGRG00001016548Ascc110091.036Cricetulus_griseus_chok1gshd
ENSG00000138303ASCC110091.176ENSCGRG00000009484Ascc110091.036Cricetulus_griseus_crigri
ENSG00000138303ASCC110056.688ENSCSEG00000017011ascc110056.077Cynoglossus_semilaevis
ENSG00000138303ASCC19953.548ENSCVAG00000004935ascc19855.077Cyprinodon_variegatus
ENSG00000138303ASCC19946.729ENSDARG00000077760ascc110058.661Danio_rerio
ENSG00000138303ASCC110089.216ENSDNOG00000006561ASCC19587.542Dasypus_novemcinctus
ENSG00000138303ASCC110092.157ENSDORG00000007065Ascc110091.597Dipodomys_ordii
ENSG00000138303ASCC18734.483FBgn0033475CG121298630.678Drosophila_melanogaster
ENSG00000138303ASCC110091.176ENSETEG00000000692ASCC110078.000Echinops_telfairi
ENSG00000138303ASCC19947.573ENSEBUG00000012423ASCC19744.034Eptatretus_burgeri
ENSG00000138303ASCC110092.157ENSEASG00005016551ASCC110091.597Equus_asinus_asinus
ENSG00000138303ASCC110092.157ENSECAG00000017211ASCC110091.317Equus_caballus
ENSG00000138303ASCC17397.143ENSEEUG00000014874-5697.143Erinaceus_europaeus
ENSG00000138303ASCC19958.537ENSELUG00000013564ascc110054.144Esox_lucius
ENSG00000138303ASCC110092.437ENSFCAG00000026720ASCC110092.437Felis_catus
ENSG00000138303ASCC19971.569ENSFALG00000012676ASCC110065.826Ficedula_albicollis
ENSG00000138303ASCC110091.317ENSFDAG00000020297ASCC110091.317Fukomys_damarensis
ENSG00000138303ASCC110055.402ENSFHEG00000012251ascc110055.801Fundulus_heteroclitus
ENSG00000138303ASCC110052.381ENSGMOG00000000360ascc110052.941Gadus_morhua
ENSG00000138303ASCC19870.492ENSGALG00000026019ASCC19965.915Gallus_gallus
ENSG00000138303ASCC110055.801ENSGAFG00000004788ascc110056.077Gambusia_affinis
ENSG00000138303ASCC110054.945ENSGACG00000002371ascc110054.945Gasterosteus_aculeatus
ENSG00000138303ASCC19971.569ENSGAGG00000009896ASCC19966.358Gopherus_agassizii
ENSG00000138303ASCC1100100.000ENSGGOG00000007559ASCC110099.160Gorilla_gorilla
ENSG00000138303ASCC19659.664ENSHBUG00000018521ascc110055.679Haplochromis_burtoni
ENSG00000138303ASCC110091.317ENSHGLG00000012359ASCC110091.317Heterocephalus_glaber_female
ENSG00000138303ASCC110091.317ENSHGLG00100012456ASCC110091.317Heterocephalus_glaber_male
ENSG00000138303ASCC110056.410ENSHCOG00000016151ascc19955.956Hippocampus_comes
ENSG00000138303ASCC19859.836ENSIPUG00000009943ascc19958.101Ictalurus_punctatus
ENSG00000138303ASCC110094.678ENSSTOG00000000689ASCC110094.678Ictidomys_tridecemlineatus
ENSG00000138303ASCC110090.476ENSJJAG00000009829Ascc110090.476Jaculus_jaculus
ENSG00000138303ASCC110056.354ENSKMAG00000014780ascc110056.354Kryptolebias_marmoratus
ENSG00000138303ASCC110056.077ENSLBEG00000016879ascc110056.354Labrus_bergylta
ENSG00000138303ASCC110065.686ENSLACG00000017431ASCC110059.104Latimeria_chalumnae
ENSG00000138303ASCC19767.647ENSLOCG00000005266ascc110061.003Lepisosteus_oculatus
ENSG00000138303ASCC110090.196ENSLAFG00000015184ASCC110087.395Loxodonta_africana
ENSG00000138303ASCC1100100.000ENSMFAG00000042558ASCC110098.319Macaca_fascicularis
ENSG00000138303ASCC1100100.000ENSMMUG00000009479ASCC1100100.000Macaca_mulatta
ENSG00000138303ASCC1100100.000ENSMNEG00000036564ASCC110097.759Macaca_nemestrina
ENSG00000138303ASCC1100100.000ENSMLEG00000027895ASCC110098.319Mandrillus_leucophaeus
ENSG00000138303ASCC19760.000ENSMAMG00000019041ascc110054.571Mastacembelus_armatus
ENSG00000138303ASCC19657.983ENSMZEG00005001082ascc110055.125Maylandia_zebra
ENSG00000138303ASCC19867.769ENSMGAG00000005410ASCC19464.507Meleagris_gallopavo
ENSG00000138303ASCC110088.489ENSMAUG00000009049-9894.483Mesocricetus_auratus
ENSG00000138303ASCC110096.078ENSMICG00000004222ASCC110094.118Microcebus_murinus
ENSG00000138303ASCC110092.157ENSMOCG00000007733Ascc110088.515Microtus_ochrogaster
ENSG00000138303ASCC110055.414ENSMMOG00000013797ascc110055.249Mola_mola
ENSG00000138303ASCC110052.316ENSMALG00000001855ascc110053.056Monopterus_albus
ENSG00000138303ASCC110085.994MGP_CAROLIEiJ_G0015351Ascc110085.994Mus_caroli
ENSG00000138303ASCC19988.235ENSMUSG00000044475Ascc110086.555Mus_musculus
ENSG00000138303ASCC19987.255MGP_PahariEiJ_G0030767Ascc110085.714Mus_pahari
ENSG00000138303ASCC110093.137ENSMPUG00000004088ASCC19292.157Mustela_putorius_furo
ENSG00000138303ASCC110090.196ENSMLUG00000005491ASCC110084.958Myotis_lucifugus
ENSG00000138303ASCC110091.176ENSNGAG00000022999Ascc110090.476Nannospalax_galili
ENSG00000138303ASCC110056.022ENSNBRG00000013947ascc110056.583Neolamprologus_brichardi
ENSG00000138303ASCC1100100.000ENSNLEG00000016392ASCC110098.880Nomascus_leucogenys
ENSG00000138303ASCC18540.726ENSMEUG00000003812-10040.726Notamacropus_eugenii
ENSG00000138303ASCC110073.214ENSOPRG00000004965ASCC110069.143Ochotona_princeps
ENSG00000138303ASCC110081.553ENSODEG00000013709ASCC110076.471Octodon_degus
ENSG00000138303ASCC19657.983ENSONIG00000016090ascc110054.247Oreochromis_niloticus
ENSG00000138303ASCC19969.444ENSOANG00000011748ASCC110067.507Ornithorhynchus_anatinus
ENSG00000138303ASCC110093.557ENSOCUG00000016753ASCC110093.557Oryctolagus_cuniculus
ENSG00000138303ASCC110054.875ENSORLG00000009163ascc19954.875Oryzias_latipes
ENSG00000138303ASCC110054.596ENSORLG00020006942ascc19954.596Oryzias_latipes_hni
ENSG00000138303ASCC110054.596ENSORLG00015006164ascc19954.596Oryzias_latipes_hsok
ENSG00000138303ASCC110055.769ENSOMEG00000011960ascc19955.769Oryzias_melastigma
ENSG00000138303ASCC110095.968ENSOGAG00000008212ASCC19494.398Otolemur_garnettii
ENSG00000138303ASCC110093.137ENSOARG00000007094ASCC19991.597Ovis_aries
ENSG00000138303ASCC1100100.000ENSPPAG00000039805ASCC110099.440Pan_paniscus
ENSG00000138303ASCC110092.157ENSPPRG00000010572ASCC110092.157Panthera_pardus
ENSG00000138303ASCC110092.157ENSPTIG00000015725ASCC110091.877Panthera_tigris_altaica
ENSG00000138303ASCC1100100.000ENSPTRG00000002609ASCC110099.250Pan_troglodytes
ENSG00000138303ASCC1100100.000ENSPANG00000022316ASCC110098.319Papio_anubis
ENSG00000138303ASCC110057.843ENSPKIG00000007571ascc110056.825Paramormyrops_kingsleyae
ENSG00000138303ASCC19969.444ENSPSIG00000017791ASCC19765.863Pelodiscus_sinensis
ENSG00000138303ASCC19658.824ENSPMGG00000003988ascc19358.654Periophthalmus_magnuspinnatus
ENSG00000138303ASCC110087.395ENSPEMG00000002244Ascc110087.395Peromyscus_maniculatus_bairdii
ENSG00000138303ASCC110065.132ENSPCIG00000027424-9966.258Phascolarctos_cinereus
ENSG00000138303ASCC110055.125ENSPFOG00000023421ascc110055.525Poecilia_formosa
ENSG00000138303ASCC110055.402ENSPLAG00000001021ascc110055.801Poecilia_latipinna
ENSG00000138303ASCC110054.972ENSPMEG00000001736ascc110054.972Poecilia_mexicana
ENSG00000138303ASCC110056.145ENSPREG00000001944ascc110056.145Poecilia_reticulata
ENSG00000138303ASCC1100100.000ENSPPYG00000002356-10098.599Pongo_abelii
ENSG00000138303ASCC110087.255ENSPCAG00000012317ASCC18188.306Procavia_capensis
ENSG00000138303ASCC110098.039ENSPCOG00000017110ASCC110095.798Propithecus_coquereli
ENSG00000138303ASCC19994.059ENSPVAG00000001554ASCC19786.723Pteropus_vampyrus
ENSG00000138303ASCC19657.983ENSPNYG00000021413ascc110055.125Pundamilia_nyererei
ENSG00000138303ASCC19863.115ENSPNAG00000008666ascc19062.116Pygocentrus_nattereri
ENSG00000138303ASCC110086.835ENSRNOG00000056647Ascc110086.835Rattus_norvegicus
ENSG00000138303ASCC1100100.000ENSRBIG00000033507ASCC110098.039Rhinopithecus_bieti
ENSG00000138303ASCC1100100.000ENSRROG00000005189ASCC110098.039Rhinopithecus_roxellana
ENSG00000138303ASCC110096.429ENSSBOG00000022342ASCC110089.916Saimiri_boliviensis_boliviensis
ENSG00000138303ASCC19973.529ENSSHAG00000006413ASCC110070.028Sarcophilus_harrisii
ENSG00000138303ASCC19665.625ENSSFOG00015013939ascc110056.546Scleropages_formosus
ENSG00000138303ASCC19857.851ENSSMAG00000002213ascc110054.848Scophthalmus_maximus
ENSG00000138303ASCC19657.143ENSSDUG00000019444ascc110054.420Seriola_dumerili
ENSG00000138303ASCC19657.143ENSSLDG00000024224ascc110054.144Seriola_lalandi_dorsalis
ENSG00000138303ASCC19986.275ENSSARG00000001560ASCC110076.791Sorex_araneus
ENSG00000138303ASCC19974.286ENSSPUG00000010417ASCC110067.688Sphenodon_punctatus
ENSG00000138303ASCC19856.557ENSSPAG00000015588ascc110053.911Stegastes_partitus
ENSG00000138303ASCC19993.137ENSSSCG00000023130ASCC110091.597Sus_scrofa
ENSG00000138303ASCC110066.667ENSTGUG00000004483ASCC19966.667Taeniopygia_guttata
ENSG00000138303ASCC110058.824ENSTRUG00000012576ascc110057.263Takifugu_rubripes
ENSG00000138303ASCC19662.185ENSTNIG00000019392ascc110055.978Tetraodon_nigroviridis
ENSG00000138303ASCC18592.742ENSTBEG00000005601ASCC110083.013Tupaia_belangeri
ENSG00000138303ASCC110092.157ENSTTRG00000009744ASCC19787.288Tursiops_truncatus
ENSG00000138303ASCC110093.137ENSUAMG00000009172ASCC110091.877Ursus_americanus
ENSG00000138303ASCC110093.137ENSUMAG00000008959ASCC18991.850Ursus_maritimus
ENSG00000138303ASCC18591.903ENSVPAG00000002811ASCC110079.938Vicugna_pacos
ENSG00000138303ASCC110093.137ENSVVUG00000022616ASCC110092.717Vulpes_vulpes
ENSG00000138303ASCC110071.569ENSXETG00000006149ascc110062.465Xenopus_tropicalis
ENSG00000138303ASCC110055.125ENSXCOG00000006169ascc110055.525Xiphophorus_couchianus
ENSG00000138303ASCC110054.972ENSXMAG00000014996ascc110054.972Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005634nucleus12077347.26924529.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005667transcription factor complex12077347.IDAComponent
GO:0006307DNA dealkylation involved in DNA repair-TASProcess
GO:0006355regulation of transcription, DNA-templated12077347.IDAProcess
GO:0016607nuclear speck-IEAComponent
GO:0031594neuromuscular junction26924529.IMPComponent

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